Wall clock time and date at job start Mon Mar 30 2020 01:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46844 * 110.99887 * 2 1 4 4 C 1.53037 * 109.52152 * 174.16043 * 3 2 1 5 5 C 1.53124 * 109.28148 * 59.17731 * 4 3 2 6 6 C 1.53119 * 109.15796 * 302.35024 * 5 4 3 7 7 C 1.46850 * 110.99915 * 235.78917 * 2 1 3 8 8 H 1.08998 * 109.46244 * 65.82281 * 7 2 1 9 9 C 1.50706 * 109.46034 * 305.85563 * 7 2 1 10 10 O 1.21277 * 120.00074 * 339.99980 * 9 7 2 11 11 N 1.34776 * 119.99352 * 160.00372 * 9 7 2 12 12 C 1.46507 * 119.99798 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47269 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47143 * 300.00031 * 13 12 11 15 15 C 1.53002 * 109.46832 * 60.00311 * 13 12 11 16 16 C 1.50693 * 109.46869 * 179.97438 * 13 12 11 17 17 H 1.07997 * 120.00489 * 0.02562 * 16 13 12 18 18 C 1.37883 * 120.00025 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99531 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 120.00366 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47286 * 90.00353 * 20 18 16 22 22 H 1.48502 * 109.47527 * 210.00211 * 20 18 16 23 23 H 1.48504 * 109.47004 * 330.00384 * 20 18 16 24 24 H 1.08999 * 109.46692 * 56.05113 * 1 2 3 25 25 H 1.09002 * 109.46991 * 176.04490 * 1 2 3 26 26 H 1.09000 * 109.47202 * 296.04782 * 1 2 3 27 27 H 1.08995 * 109.46267 * 294.17336 * 3 2 1 28 28 H 1.09000 * 109.46172 * 54.15831 * 3 2 1 29 29 H 1.08997 * 109.50540 * 179.12218 * 4 3 2 30 30 H 1.09008 * 109.50385 * 299.20130 * 4 3 2 31 31 H 1.09001 * 109.52004 * 62.24831 * 5 4 3 32 32 H 1.08995 * 109.52453 * 182.37628 * 5 4 3 33 33 H 1.09004 * 109.50312 * 177.59656 * 6 5 4 34 34 H 1.08999 * 109.50366 * 297.70667 * 6 5 4 35 35 H 0.96999 * 120.00586 * 359.97438 * 11 9 7 36 36 H 1.09000 * 109.47084 * 300.00412 * 12 11 9 37 37 H 1.09002 * 109.47021 * 59.99611 * 12 11 9 38 38 H 1.09005 * 109.47026 * 60.00030 * 14 13 12 39 39 H 1.09000 * 109.47015 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.47136 * 299.99994 * 14 13 12 41 41 H 1.08993 * 109.47152 * 59.99899 * 15 13 12 42 42 H 1.08999 * 109.46673 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.46650 * 299.99692 * 15 13 12 44 44 H 0.97005 * 119.99711 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1189 0.5369 -1.0143 6 6 3.5181 -0.8715 -1.0208 7 6 1.9953 -0.7708 -1.1338 8 1 1.7325 -0.2709 -2.0660 9 6 1.3982 -2.1545 -1.1205 10 8 0.9165 -2.5973 -0.0994 11 7 1.3997 -2.8997 -2.2435 12 6 0.8197 -4.2450 -2.2306 13 6 0.9487 -4.8694 -3.6214 14 6 0.2052 -4.0033 -4.6402 15 6 2.4269 -4.9550 -4.0069 16 6 0.3527 -6.2534 -3.6079 17 1 -0.0756 -6.6481 -2.6985 18 6 0.3533 -7.0155 -4.7570 19 7 0.8745 -6.5347 -5.8646 20 14 -0.3861 -8.7308 -4.7405 21 1 -1.8270 -8.6521 -5.0906 22 1 0.3183 -9.5831 -5.7318 23 1 -0.2372 -9.3210 -3.3859 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4513 0.9233 27 1 1.7325 1.8608 -0.9376 28 1 1.5636 1.9256 0.8331 29 1 3.9099 2.3511 0.1311 30 1 3.7814 0.8573 1.0910 31 1 3.8888 1.0353 -1.9560 32 1 5.1999 0.4723 -0.8911 33 1 3.9099 -1.4304 -1.8707 34 1 3.7813 -1.3837 -0.0953 35 1 1.7847 -2.5454 -3.0603 36 1 1.3490 -4.8619 -1.5044 37 1 -0.2335 -4.1840 -1.9563 38 1 0.6368 -3.0023 -4.6499 39 1 0.2975 -4.4479 -5.6312 40 1 -0.8479 -3.9423 -4.3656 41 1 2.9565 -5.5720 -3.2811 42 1 2.5188 -5.3994 -4.9979 43 1 2.8583 -3.9540 -4.0165 44 1 0.8746 -7.0707 -6.6731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590916150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:31 Heat of formation + Delta-G solvation = -45.558483 kcal Electronic energy + Delta-G solvation = -21692.246135 eV Core-core repulsion = 18643.974074 eV Total energy + Delta-G solvation = -3048.272060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.13538 -37.96790 -36.24711 -33.69783 -33.12603 -31.47617 -30.50627 -26.95557 -25.73952 -25.70068 -25.06510 -23.48313 -22.80275 -20.34711 -19.61577 -18.76085 -17.10661 -15.96499 -15.70783 -15.33475 -14.94578 -14.68108 -14.41968 -14.40234 -13.95386 -13.46086 -13.14406 -12.92401 -12.82420 -12.59117 -12.18648 -12.09106 -11.68169 -11.44797 -11.33797 -11.19011 -10.96579 -10.86955 -10.78059 -10.69808 -10.51029 -10.37734 -10.20221 -9.63940 -9.45077 -9.11786 -8.78812 -8.45251 -8.34467 -8.25178 -6.02683 -4.12646 3.04035 3.28052 3.35088 3.38619 3.50660 4.04666 4.39994 4.66763 4.76105 4.80366 5.05884 5.14383 5.24174 5.24493 5.37766 5.46036 5.49339 5.56774 5.65662 5.78660 5.82886 5.96931 6.01463 6.15001 6.22526 6.25137 6.32853 6.50079 6.77918 6.81316 6.89626 6.98033 7.01012 7.04908 7.06782 7.35020 7.54728 7.68876 8.00005 8.06664 8.16462 8.38211 8.73974 8.88322 9.53208 10.98709 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037485 B = 0.004140 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.781460 B = 6761.510314 C = 7073.335725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.519 5.519 3 C 0.056 3.944 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.069 3.931 8 H 0.057 0.943 9 C 0.508 3.492 10 O -0.533 6.533 11 N -0.717 5.717 12 C 0.133 3.867 13 C 0.055 3.945 14 C -0.130 4.130 15 C -0.130 4.130 16 C -0.506 4.506 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.018 0.982 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.031 0.969 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.396 0.604 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.005 0.995 39 H 0.085 0.915 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.085 0.915 43 H 0.006 0.994 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 15.140 5.959 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.244 5.244 3 C -0.072 4.072 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.145 4.145 7 C -0.043 4.043 8 H 0.075 0.925 9 C 0.292 3.708 10 O -0.410 6.410 11 N -0.368 5.368 12 C 0.011 3.989 13 C 0.055 3.945 14 C -0.188 4.188 15 C -0.188 4.188 16 C -0.544 4.544 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.037 0.963 25 H 0.108 0.892 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.231 0.769 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.024 0.976 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.104 0.896 43 H 0.025 0.975 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.596 14.506 6.927 16.719 hybrid contribution -0.553 -0.350 -1.230 1.393 sum 4.043 14.156 5.698 15.786 Atomic orbital electron populations 1.22578 0.86599 1.03977 1.00082 1.61630 1.08289 1.12615 1.41903 1.22129 0.95658 0.88964 1.00424 1.21614 0.94454 0.99999 0.99564 1.21578 1.00110 0.95394 0.98600 1.21538 0.91774 0.97724 1.03511 1.21615 0.96434 0.92915 0.93345 0.92541 1.20306 0.79750 0.86797 0.83939 1.90646 1.45865 1.72674 1.31856 1.46346 1.60474 1.18012 1.11958 1.21704 0.96788 0.79873 1.00568 1.18358 0.93452 0.94456 0.88254 1.21826 0.97745 0.95350 1.03857 1.21820 0.96579 0.96643 1.03724 1.20986 1.38410 0.98622 0.96402 0.92450 1.24878 0.95087 0.98081 0.95452 1.69805 1.45125 1.36953 1.00590 0.86573 0.79171 0.84263 0.77881 1.20731 1.21266 1.19883 0.96315 0.89194 0.91434 0.95045 0.90547 0.91550 0.90896 0.92082 0.91333 0.90776 0.90354 0.76863 0.92714 0.92828 0.97589 0.89603 0.95494 0.95415 0.89628 0.97536 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.21 60.07 0.55 0.76 16 2 N -0.52 -7.07 4.51 -236.32 -1.07 -8.13 16 3 C 0.06 0.59 5.46 -3.84 -0.02 0.56 16 4 C -0.12 -1.08 6.09 -26.65 -0.16 -1.25 16 5 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16 6 C -0.11 -1.28 5.36 -26.65 -0.14 -1.42 16 7 C 0.07 0.95 2.24 -68.87 -0.15 0.80 16 8 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 9 C 0.51 8.91 6.16 -10.98 -0.07 8.84 16 10 O -0.53 -11.24 14.60 5.56 0.08 -11.16 16 11 N -0.72 -12.76 4.96 -60.29 -0.30 -13.06 16 12 C 0.13 2.83 4.50 -4.04 -0.02 2.81 16 13 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 14 C -0.13 -2.92 8.08 37.16 0.30 -2.61 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.51 -13.22 8.01 -34.44 -0.28 -13.49 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.51 9.35 55.43 0.52 -22.99 16 20 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.09 1.48 5.44 -51.93 -0.28 1.20 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 6.40 6.16 -40.82 -0.25 6.15 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 39 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 44 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 334.75 15.07 5.04 5.04 Total: -1.00 -28.24 334.75 -8.52 -36.76 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.76 Total: 3.89 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.02 Total: -6.04 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.85 Total: -44.18 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.24 -8.52 -36.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.797 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds