Wall clock time and date at job start Mon Mar 30 2020 01:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46844 * 110.99887 * 2 1 4 4 C 1.53037 * 109.52152 * 174.16043 * 3 2 1 5 5 C 1.53124 * 109.28148 * 59.17731 * 4 3 2 6 6 C 1.53119 * 109.15796 * 302.35024 * 5 4 3 7 7 C 1.46850 * 110.99915 * 235.78917 * 2 1 3 8 8 H 1.08998 * 109.46244 * 65.82281 * 7 2 1 9 9 C 1.50706 * 109.46034 * 305.85563 * 7 2 1 10 10 O 1.21277 * 120.00074 * 339.99980 * 9 7 2 11 11 N 1.34776 * 119.99352 * 160.00372 * 9 7 2 12 12 C 1.46507 * 119.99798 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47269 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47143 * 300.00031 * 13 12 11 15 15 C 1.53002 * 109.46832 * 60.00311 * 13 12 11 16 16 C 1.50693 * 109.46869 * 179.97438 * 13 12 11 17 17 H 1.07997 * 120.00489 * 0.02562 * 16 13 12 18 18 C 1.37883 * 120.00025 * 179.97438 * 16 13 12 19 19 N 1.31515 * 119.99531 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 120.00366 * 180.02562 * 18 16 13 21 21 H 1.48499 * 109.47286 * 90.00353 * 20 18 16 22 22 H 1.48502 * 109.47527 * 210.00211 * 20 18 16 23 23 H 1.48504 * 109.47004 * 330.00384 * 20 18 16 24 24 H 1.08999 * 109.46692 * 56.05113 * 1 2 3 25 25 H 1.09002 * 109.46991 * 176.04490 * 1 2 3 26 26 H 1.09000 * 109.47202 * 296.04782 * 1 2 3 27 27 H 1.08995 * 109.46267 * 294.17336 * 3 2 1 28 28 H 1.09000 * 109.46172 * 54.15831 * 3 2 1 29 29 H 1.08997 * 109.50540 * 179.12218 * 4 3 2 30 30 H 1.09008 * 109.50385 * 299.20130 * 4 3 2 31 31 H 1.09001 * 109.52004 * 62.24831 * 5 4 3 32 32 H 1.08995 * 109.52453 * 182.37628 * 5 4 3 33 33 H 1.09004 * 109.50312 * 177.59656 * 6 5 4 34 34 H 1.08999 * 109.50366 * 297.70667 * 6 5 4 35 35 H 0.96999 * 120.00586 * 359.97438 * 11 9 7 36 36 H 1.09000 * 109.47084 * 300.00412 * 12 11 9 37 37 H 1.09002 * 109.47021 * 59.99611 * 12 11 9 38 38 H 1.09005 * 109.47026 * 60.00030 * 14 13 12 39 39 H 1.09000 * 109.47015 * 179.97438 * 14 13 12 40 40 H 1.09002 * 109.47136 * 299.99994 * 14 13 12 41 41 H 1.08993 * 109.47152 * 59.99899 * 15 13 12 42 42 H 1.08999 * 109.46673 * 180.02562 * 15 13 12 43 43 H 1.09001 * 109.46650 * 299.99692 * 15 13 12 44 44 H 0.97005 * 119.99711 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1189 0.5369 -1.0143 6 6 3.5181 -0.8715 -1.0208 7 6 1.9953 -0.7708 -1.1338 8 1 1.7325 -0.2709 -2.0660 9 6 1.3982 -2.1545 -1.1205 10 8 0.9165 -2.5973 -0.0994 11 7 1.3997 -2.8997 -2.2435 12 6 0.8197 -4.2450 -2.2306 13 6 0.9487 -4.8694 -3.6214 14 6 0.2052 -4.0033 -4.6402 15 6 2.4269 -4.9550 -4.0069 16 6 0.3527 -6.2534 -3.6079 17 1 -0.0756 -6.6481 -2.6985 18 6 0.3533 -7.0155 -4.7570 19 7 0.8745 -6.5347 -5.8646 20 14 -0.3861 -8.7308 -4.7405 21 1 -1.8270 -8.6521 -5.0906 22 1 0.3183 -9.5831 -5.7318 23 1 -0.2372 -9.3210 -3.3859 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4513 0.9233 27 1 1.7325 1.8608 -0.9376 28 1 1.5636 1.9256 0.8331 29 1 3.9099 2.3511 0.1311 30 1 3.7814 0.8573 1.0910 31 1 3.8888 1.0353 -1.9560 32 1 5.1999 0.4723 -0.8911 33 1 3.9099 -1.4304 -1.8707 34 1 3.7813 -1.3837 -0.0953 35 1 1.7847 -2.5454 -3.0603 36 1 1.3490 -4.8619 -1.5044 37 1 -0.2335 -4.1840 -1.9563 38 1 0.6368 -3.0023 -4.6499 39 1 0.2975 -4.4479 -5.6312 40 1 -0.8479 -3.9423 -4.3656 41 1 2.9565 -5.5720 -3.2811 42 1 2.5188 -5.3994 -4.9979 43 1 2.8583 -3.9540 -4.0165 44 1 0.8746 -7.0707 -6.6731 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590916150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:31 Heat of formation + Delta-G solvation = -63.334324 kcal Electronic energy + Delta-G solvation = -21693.016953 eV Core-core repulsion = 18643.974074 eV Total energy + Delta-G solvation = -3049.042878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39187 -39.22244 -37.93029 -35.10088 -34.34801 -32.96791 -31.85250 -28.01927 -27.57099 -27.43156 -26.78738 -24.60643 -23.76847 -21.57192 -20.73628 -20.49204 -18.50536 -17.70085 -17.10248 -16.63104 -16.45499 -16.04911 -15.70432 -15.38119 -15.16172 -14.84581 -14.74294 -14.20349 -14.02498 -13.91548 -13.73188 -13.26894 -13.09999 -13.02917 -12.74784 -12.60958 -12.59901 -12.33568 -12.24408 -12.13638 -11.82225 -11.60530 -11.48721 -11.32536 -11.24091 -10.74214 -10.51524 -10.40004 -9.92795 -9.28631 -8.02771 -6.18405 1.42039 1.45079 1.53241 1.65653 2.19502 2.47446 2.97458 3.20862 3.70176 3.84001 3.99678 4.08860 4.17941 4.29393 4.43388 4.46165 4.50279 4.54237 4.59933 4.70665 4.77711 4.84623 4.97054 4.99286 5.04879 5.05835 5.06956 5.10962 5.18551 5.19937 5.26089 5.36931 5.47378 5.59250 5.66526 5.66877 5.94203 6.14513 6.14822 6.20988 6.43081 6.69258 6.85495 7.33517 7.49290 8.96084 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037485 B = 0.004140 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.781460 B = 6761.510314 C = 7073.335725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.539 5.539 3 C 0.054 3.946 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.106 4.106 7 C 0.076 3.924 8 H 0.075 0.925 9 C 0.506 3.494 10 O -0.572 6.572 11 N -0.710 5.710 12 C 0.150 3.850 13 C 0.051 3.949 14 C -0.119 4.119 15 C -0.119 4.119 16 C -0.529 4.529 17 H 0.043 0.957 18 C 0.030 3.970 19 N -0.898 5.898 20 Si 0.944 3.056 21 H -0.279 1.279 22 H -0.282 1.282 23 H -0.277 1.277 24 H 0.032 0.968 25 H 0.055 0.945 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.407 0.593 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.062 0.938 43 H 0.038 0.962 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 17.190 5.606 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.073 4.073 4 C -0.154 4.154 5 C -0.152 4.152 6 C -0.145 4.145 7 C -0.035 4.035 8 H 0.093 0.907 9 C 0.293 3.707 10 O -0.452 6.452 11 N -0.362 5.362 12 C 0.027 3.973 13 C 0.050 3.950 14 C -0.177 4.177 15 C -0.177 4.177 16 C -0.568 4.568 17 H 0.061 0.939 18 C -0.170 4.170 19 N -0.537 5.537 20 Si 0.771 3.229 21 H -0.205 1.205 22 H -0.207 1.207 23 H -0.202 1.202 24 H 0.050 0.950 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.244 0.756 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.599 16.583 6.560 18.691 hybrid contribution -0.874 -0.971 -1.075 1.692 sum 4.725 15.612 5.485 17.209 Atomic orbital electron populations 1.22474 0.87037 1.02033 1.01329 1.61640 1.08173 1.14674 1.42034 1.22256 0.96488 0.87088 1.01429 1.21632 0.93518 1.01347 0.98915 1.21580 1.00780 0.93449 0.99350 1.21573 0.90403 0.99709 1.02788 1.21600 0.97290 0.90214 0.94431 0.90717 1.21071 0.78684 0.88085 0.82876 1.90630 1.47431 1.73841 1.33270 1.46161 1.60419 1.16753 1.12838 1.21238 0.95719 0.81431 0.98962 1.18361 0.93864 0.93470 0.89291 1.21660 0.97332 0.96652 1.02066 1.21656 0.96058 0.98122 1.01879 1.21265 1.39010 1.00478 0.96052 0.93896 1.25434 0.95504 1.00811 0.95289 1.69904 1.45348 1.37710 1.00723 0.85774 0.78527 0.80979 0.77615 1.20513 1.20734 1.20160 0.94998 0.92653 0.90244 0.93912 0.89577 0.88975 0.92041 0.90716 0.89874 0.90131 0.92324 0.75572 0.94552 0.94579 0.94492 0.91846 0.96431 0.96339 0.91882 0.94359 0.93010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.21 127.69 1.18 1.68 16 2 N -0.54 -13.79 4.51 -901.59 -4.07 -17.86 16 3 C 0.05 0.97 5.46 86.33 0.47 1.44 16 4 C -0.12 -1.75 6.09 30.65 0.19 -1.56 16 5 C -0.11 -1.74 6.00 30.68 0.18 -1.55 16 6 C -0.11 -2.31 5.36 30.64 0.16 -2.15 16 7 C 0.08 1.97 2.24 44.19 0.10 2.07 16 8 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 9 C 0.51 17.56 6.16 87.66 0.54 18.10 16 10 O -0.57 -24.63 14.60 -3.02 -0.04 -24.68 16 11 N -0.71 -24.72 4.96 -463.04 -2.30 -27.02 16 12 C 0.15 6.48 4.50 86.38 0.39 6.87 16 13 C 0.05 2.35 0.50 -52.93 -0.03 2.32 16 14 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 15 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 16 C -0.53 -28.14 8.01 25.60 0.21 -27.94 16 17 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 18 C 0.03 1.55 5.15 84.66 0.44 1.99 16 19 N -0.90 -47.71 9.35 21.45 0.20 -47.51 16 20 Si 0.94 42.68 29.54 68.60 2.03 44.71 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 1.84 5.44 -2.39 -0.01 1.83 16 26 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 28 H 0.09 1.37 8.12 -2.39 -0.02 1.35 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.41 12.29 6.16 -92.71 -0.57 11.72 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.04 1.36 6.86 -2.38 -0.02 1.34 16 39 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 40 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 43 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 44 H 0.26 13.31 8.31 -92.70 -0.77 12.54 16 Total: -1.00 -61.57 334.75 1.20 -60.37 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.39 Total: 20.09 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: 4.99 Total: -8.11 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -6.16 Total: -92.38 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.04 Total: -24.68 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -61.57 1.20 -60.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590916150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.966 kcal (2) G-P(sol) polarization free energy of solvation -61.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds