Wall clock time and date at job start Mon Mar 30 2020 00:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47139 * 2 1 4 4 C 1.52994 * 109.47438 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47541 * 305.00210 * 4 3 2 6 6 C 1.53000 * 109.47600 * 184.99786 * 4 3 2 7 7 N 1.46506 * 109.47040 * 64.99561 * 4 3 2 8 8 C 1.34770 * 120.00206 * 204.99841 * 7 4 3 9 9 O 1.21584 * 120.00098 * 5.08301 * 8 7 4 10 10 N 1.34777 * 119.99990 * 185.07826 * 8 7 4 11 11 C 1.46930 * 120.63129 * 354.94493 * 10 8 7 12 12 C 1.53197 * 108.77285 * 126.41060 * 11 10 8 13 13 C 1.53040 * 109.31487 * 54.63837 * 12 11 10 14 14 C 1.53040 * 109.53612 * 298.63140 * 13 12 11 15 15 H 1.08994 * 109.49684 * 301.41668 * 14 13 12 16 16 C 1.50702 * 109.52295 * 181.33077 * 14 13 12 17 17 H 1.07995 * 119.99865 * 0.08455 * 16 14 13 18 18 C 1.37877 * 119.99887 * 180.02562 * 16 14 13 19 19 N 1.31523 * 119.99895 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99958 * 180.02562 * 18 16 14 21 21 H 1.48491 * 109.47105 * 90.00186 * 20 18 16 22 22 H 1.48503 * 109.46895 * 210.00184 * 20 18 16 23 23 H 1.48500 * 109.46803 * 330.00026 * 20 18 16 24 24 C 1.46926 * 120.63009 * 174.96456 * 10 8 7 25 25 H 1.09000 * 109.47448 * 299.99870 * 1 2 3 26 26 H 1.08996 * 109.47167 * 60.00475 * 1 2 3 27 27 H 1.09007 * 109.47323 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47159 * 239.99410 * 2 1 3 29 29 H 1.09005 * 109.46687 * 119.99895 * 2 1 3 30 30 H 1.09007 * 109.47257 * 59.99722 * 3 2 1 31 31 H 1.08998 * 109.47189 * 299.99982 * 3 2 1 32 32 H 1.08994 * 109.46767 * 60.00331 * 6 4 3 33 33 H 1.08996 * 109.47229 * 180.02562 * 6 4 3 34 34 H 1.09002 * 109.47040 * 300.00299 * 6 4 3 35 35 H 0.97005 * 119.99639 * 25.00825 * 7 4 3 36 36 H 1.08995 * 109.58769 * 246.19695 * 11 10 8 37 37 H 1.08995 * 109.58376 * 6.48468 * 11 10 8 38 38 H 1.09003 * 109.49429 * 174.58583 * 12 11 10 39 39 H 1.08996 * 109.50060 * 294.67881 * 12 11 10 40 40 H 1.08989 * 109.46143 * 178.61005 * 13 12 11 41 41 H 1.09003 * 109.45643 * 58.64789 * 13 12 11 42 42 H 0.97002 * 119.99401 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58384 * 113.80479 * 24 10 8 44 44 H 1.08995 * 109.70527 * 353.44950 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0799 2.8795 0.1263 7 7 4.0588 0.8585 -1.2509 8 6 5.2808 0.2921 -1.2981 9 8 5.9397 0.1826 -0.2822 10 7 5.7723 -0.1532 -2.4714 11 6 4.9464 -0.1294 -3.6864 12 6 5.7104 0.6128 -4.7874 13 6 7.0846 -0.0343 -4.9743 14 6 7.8834 0.0762 -3.6735 15 1 7.9883 1.1258 -3.3991 16 6 9.2486 -0.5319 -3.8677 17 1 9.5206 -0.9541 -4.8238 18 6 10.1506 -0.5483 -2.8250 19 7 9.8194 -0.0336 -1.6609 20 14 11.8430 -1.3014 -3.0659 21 1 12.7868 -0.2571 -3.5387 22 1 12.3254 -1.8574 -1.7761 23 1 11.7619 -2.3886 -4.0742 24 6 7.1440 -0.6720 -2.5598 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8901 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7162 3.3139 1.0575 33 1 5.1699 2.8796 0.1263 34 1 3.7169 3.4689 -0.7158 35 1 3.5030 0.8797 -2.0456 36 1 4.7409 -1.1501 -4.0086 37 1 4.0077 0.3847 -3.4800 38 1 5.1509 0.5545 -5.7211 39 1 5.8358 1.6574 -4.5026 40 1 7.6207 0.4763 -5.7741 41 1 6.9587 -1.0852 -5.2349 42 1 10.4542 -0.0448 -0.9275 43 1 7.1177 -1.7371 -2.7902 44 1 7.6578 -0.5159 -1.6112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595427115.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:05 Heat of formation + Delta-G solvation = -72.167827 kcal Electronic energy + Delta-G solvation = -21667.334144 eV Core-core repulsion = 18617.908216 eV Total energy + Delta-G solvation = -3049.425928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33826 -38.82227 -37.43799 -35.36971 -34.30952 -33.41801 -31.76522 -31.06550 -27.56745 -27.01752 -26.02995 -23.47355 -22.88315 -22.00930 -21.45045 -20.38578 -19.04932 -18.17824 -17.45379 -16.59359 -16.27992 -15.91118 -15.57006 -15.18734 -15.12656 -14.93726 -14.45565 -14.37920 -14.17217 -13.79974 -13.57165 -13.53738 -13.16651 -12.88353 -12.86362 -12.66036 -12.37259 -12.26214 -12.21516 -11.85319 -11.80991 -11.63356 -11.59197 -11.47464 -11.17996 -10.94671 -10.80856 -10.50797 -10.08034 -9.23012 -8.09653 -6.27199 1.40415 1.41772 1.52625 1.84181 2.31974 2.42469 3.08129 3.21010 3.76082 4.03395 4.07957 4.13861 4.17955 4.29167 4.41177 4.51557 4.60877 4.65601 4.72663 4.78746 4.81537 4.84234 4.86605 4.92791 5.03523 5.09215 5.11506 5.27555 5.28636 5.29603 5.31951 5.34508 5.38596 5.51729 5.57104 5.67230 5.73671 5.90584 5.99572 6.21432 6.37539 6.86260 7.20118 7.42970 7.75293 8.93584 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026910 B = 0.004680 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.243319 B = 5981.155005 C = 6471.358850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.111 4.111 4 C 0.154 3.846 5 H 0.055 0.945 6 C -0.158 4.158 7 N -0.727 5.727 8 C 0.693 3.307 9 O -0.643 6.643 10 N -0.629 5.629 11 C 0.110 3.890 12 C -0.125 4.125 13 C -0.104 4.104 14 C 0.039 3.961 15 H -0.016 1.016 16 C -0.536 4.536 17 H 0.063 0.937 18 C 0.008 3.992 19 N -0.916 5.916 20 Si 0.958 3.042 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.144 3.856 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.018 0.982 34 H 0.071 0.929 35 H 0.406 0.594 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.259 0.741 43 H 0.030 0.970 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.169 2.887 -2.178 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.149 4.149 4 C 0.049 3.951 5 H 0.073 0.927 6 C -0.217 4.217 7 N -0.386 5.386 8 C 0.395 3.605 9 O -0.525 6.525 10 N -0.365 5.365 11 C -0.012 4.012 12 C -0.163 4.163 13 C -0.142 4.142 14 C 0.019 3.981 15 H 0.003 0.997 16 C -0.575 4.575 17 H 0.081 0.919 18 C -0.191 4.191 19 N -0.554 5.554 20 Si 0.784 3.216 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.185 1.185 24 C 0.021 3.979 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.037 0.963 34 H 0.090 0.910 35 H 0.245 0.755 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.647 2.844 -1.281 19.893 hybrid contribution 1.450 -0.373 0.033 1.497 sum -18.197 2.470 -1.248 18.407 Atomic orbital electron populations 1.21734 0.94237 1.01881 1.02518 1.21520 0.96883 0.96531 1.01473 1.21852 0.90705 0.97682 1.04642 1.20928 0.95235 0.93380 0.85589 0.92683 1.22158 0.99686 0.96472 1.03380 1.45228 1.15899 1.62790 1.14715 1.16238 0.82295 0.78455 0.83518 1.90863 1.61427 1.65020 1.35164 1.47682 1.15483 1.65718 1.07642 1.21848 0.93489 1.01639 0.84203 1.21901 0.96219 0.98862 0.99301 1.21498 0.95404 1.00085 0.97228 1.18915 0.93282 0.93830 0.92054 0.99745 1.21535 0.98967 1.39262 0.97733 0.91906 1.25923 1.02535 0.95688 0.94929 1.70116 1.36427 1.45964 1.02920 0.85548 0.79728 0.78913 0.77445 1.20048 1.21435 1.18493 1.21534 0.78731 0.94789 1.02828 0.92104 0.91700 0.92888 0.92726 0.93505 0.88754 0.89434 0.89704 0.96265 0.90970 0.75540 0.90446 0.88163 0.87698 0.93199 0.92984 0.92474 0.93236 0.95118 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.13 -2.19 5.82 30.59 0.18 -2.01 16 3 C -0.11 -1.80 4.75 30.59 0.15 -1.66 16 4 C 0.15 4.01 2.62 44.99 0.12 4.12 16 5 H 0.05 1.80 7.51 -2.39 -0.02 1.79 16 6 C -0.16 -4.05 9.48 71.98 0.68 -3.37 16 7 N -0.73 -21.47 4.44 -457.82 -2.03 -23.50 16 8 C 0.69 29.65 8.26 179.06 1.48 31.13 16 9 O -0.64 -34.99 15.41 -3.98 -0.06 -35.05 16 10 N -0.63 -26.13 2.97 -836.90 -2.49 -28.62 16 11 C 0.11 3.15 6.43 86.36 0.56 3.71 16 12 C -0.12 -3.66 6.08 30.67 0.19 -3.48 16 13 C -0.10 -4.07 5.11 30.62 0.16 -3.92 16 14 C 0.04 1.99 2.25 -11.46 -0.03 1.97 16 15 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 16 C -0.54 -30.17 8.56 25.60 0.22 -29.95 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 18 C 0.01 0.49 5.30 84.65 0.45 0.94 16 19 N -0.92 -57.27 11.40 21.45 0.24 -57.02 16 20 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 C 0.14 7.49 5.39 86.37 0.47 7.96 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.05 1.04 7.75 -2.39 -0.02 1.02 16 29 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.41 8.95 6.06 -92.70 -0.56 8.39 16 36 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.10 2.04 5.56 -2.39 -0.01 2.03 16 38 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 43 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 4.57 5.16 -2.39 -0.01 4.55 16 Total: -1.00 -76.33 343.42 3.40 -72.93 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.39 Total: 19.82 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 5.32 Total: 4.30 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -4.28 Total: -109.14 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.06 Total: -35.05 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -76.33 3.40 -72.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595427115.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.758 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds