Wall clock time and date at job start Mon Mar 30 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47309 * 2 1 4 4 C 1.52999 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47391 * 54.99515 * 4 3 2 6 6 C 1.52999 * 109.47488 * 175.00083 * 4 3 2 7 7 N 1.46506 * 109.47214 * 294.99859 * 4 3 2 8 8 C 1.34770 * 120.00206 * 154.99482 * 7 4 3 9 9 O 1.21581 * 120.00221 * 5.07564 * 8 7 4 10 10 N 1.34778 * 120.00085 * 185.06735 * 8 7 4 11 11 C 1.46928 * 120.62994 * 354.94984 * 10 8 7 12 12 C 1.53195 * 108.77950 * 126.41013 * 11 10 8 13 13 C 1.53047 * 109.30849 * 54.63307 * 12 11 10 14 14 C 1.53042 * 109.53787 * 298.63562 * 13 12 11 15 15 H 1.09003 * 109.49915 * 301.41658 * 14 13 12 16 16 C 1.50702 * 109.52201 * 181.33625 * 14 13 12 17 17 H 1.07998 * 119.99880 * 0.07978 * 16 14 13 18 18 C 1.37876 * 119.99985 * 180.08249 * 16 14 13 19 19 N 1.31512 * 119.99836 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99738 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47271 * 90.00367 * 20 18 16 22 22 H 1.48508 * 109.46751 * 209.99972 * 20 18 16 23 23 H 1.48497 * 109.47316 * 329.99868 * 20 18 16 24 24 C 1.46929 * 120.63184 * 174.96835 * 10 8 7 25 25 H 1.09002 * 109.46692 * 60.00398 * 1 2 3 26 26 H 1.09000 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47200 * 300.00300 * 1 2 3 28 28 H 1.09001 * 109.47200 * 239.99700 * 2 1 3 29 29 H 1.09002 * 109.47147 * 119.99879 * 2 1 3 30 30 H 1.09001 * 109.47235 * 59.99721 * 3 2 1 31 31 H 1.08997 * 109.47376 * 299.99477 * 3 2 1 32 32 H 1.08998 * 109.46985 * 59.99935 * 6 4 3 33 33 H 1.09004 * 109.47244 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.46693 * 299.99624 * 6 4 3 35 35 H 0.97005 * 119.99639 * 335.00466 * 7 4 3 36 36 H 1.09005 * 109.58649 * 246.19748 * 11 10 8 37 37 H 1.09000 * 109.58835 * 6.62272 * 11 10 8 38 38 H 1.08996 * 109.49549 * 174.58648 * 12 11 10 39 39 H 1.08996 * 109.49409 * 294.68653 * 12 11 10 40 40 H 1.08995 * 109.45425 * 178.61594 * 13 12 11 41 41 H 1.08993 * 109.45687 * 58.65963 * 13 12 11 42 42 H 0.97004 * 119.99741 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58284 * 113.80383 * 24 10 8 44 44 H 1.08998 * 109.70229 * 353.44503 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 6 4.0800 2.8794 -0.1263 7 7 4.0589 0.8585 1.2509 8 6 5.2808 0.2919 1.2981 9 8 6.0140 0.3464 0.3298 10 7 5.6901 -0.3351 2.4188 11 6 4.8626 -0.3146 3.6327 12 6 4.6387 -1.7559 4.1012 13 6 5.9928 -2.4477 4.2751 14 6 6.7248 -2.4846 2.9316 15 1 6.1152 -3.0144 2.1996 16 6 8.0438 -3.1949 3.0962 17 1 8.3313 -3.5828 4.0623 18 6 8.8834 -3.3494 2.0136 19 7 8.5330 -2.8774 0.8371 20 14 10.5185 -4.2291 2.2178 21 1 10.3342 -5.6811 1.9668 22 1 11.5004 -3.6799 1.2484 23 1 11.0208 -4.0256 3.6003 24 6 6.9724 -1.0517 2.4499 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.7171 3.4687 0.7157 33 1 5.1701 2.8794 -0.1263 34 1 3.7164 3.3138 -1.0575 35 1 3.5030 0.8796 2.0456 36 1 5.3736 0.2483 4.4139 37 1 3.9021 0.1513 3.4125 38 1 4.1079 -1.7506 5.0532 39 1 4.0488 -2.2924 3.3582 40 1 5.8372 -3.4657 4.6320 41 1 6.5916 -1.8964 5.0000 42 1 9.1235 -2.9864 0.0753 43 1 7.6554 -0.5488 3.1346 44 1 7.4063 -1.0720 1.4502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595427117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:10 Heat of formation + Delta-G solvation = -52.458053 kcal Electronic energy + Delta-G solvation = -21732.462059 eV Core-core repulsion = 18683.890811 eV Total energy + Delta-G solvation = -3048.571248 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.77550 -37.37554 -36.04230 -33.56355 -33.03851 -31.77285 -30.32116 -29.47023 -26.71461 -25.03361 -24.40626 -21.93250 -21.75165 -20.91476 -19.95584 -18.77231 -17.43944 -16.23081 -16.03783 -14.84754 -14.79892 -14.51122 -14.27910 -13.85535 -13.67141 -13.44874 -13.40164 -12.69998 -12.65109 -12.47447 -12.24573 -12.18167 -12.00604 -11.80608 -11.45218 -10.98175 -10.95085 -10.85576 -10.74413 -10.58074 -10.45984 -10.34340 -10.18685 -9.83680 -9.35685 -9.06408 -8.90847 -8.63760 -8.37757 -7.57392 -5.94876 -4.03846 3.29881 3.36229 3.41200 3.43415 3.94576 4.42235 4.50451 4.68019 4.93187 4.96022 5.29626 5.34802 5.36596 5.41766 5.48509 5.54165 5.58552 5.65250 5.71968 5.79302 5.84903 5.97874 6.01649 6.06252 6.17832 6.23161 6.27547 6.34814 6.40988 6.63114 6.71156 6.85800 6.98909 7.03656 7.12758 7.40583 7.57632 7.80037 7.98036 8.11544 8.45308 8.68535 8.99833 9.35698 9.61621 11.10232 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.004916 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.292557 B = 5693.897384 C = 6094.373140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.124 4.124 4 C 0.159 3.841 5 H 0.085 0.915 6 C -0.162 4.162 7 N -0.751 5.751 8 C 0.701 3.299 9 O -0.585 6.585 10 N -0.624 5.624 11 C 0.116 3.884 12 C -0.133 4.133 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.028 0.972 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.130 3.870 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.388 0.612 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.263 0.737 43 H 0.037 0.963 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.695 8.721 1.983 17.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.162 4.162 4 C 0.054 3.946 5 H 0.103 0.897 6 C -0.221 4.221 7 N -0.410 5.410 8 C 0.403 3.597 9 O -0.462 6.462 10 N -0.360 5.360 11 C -0.008 4.008 12 C -0.171 4.171 13 C -0.147 4.147 14 C 0.020 3.980 15 H 0.046 0.954 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.009 3.991 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.224 0.776 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.058 8.759 1.056 16.597 hybrid contribution 0.573 -0.461 0.549 0.917 sum -13.485 8.298 1.605 15.915 Atomic orbital electron populations 1.21773 0.96073 1.01539 1.01430 1.21532 0.95347 0.96641 1.02856 1.21913 0.94423 0.97379 1.02518 1.20728 0.92445 0.93990 0.87458 0.89697 1.22194 1.02612 0.96261 1.01034 1.45437 1.17814 1.64548 1.13213 1.15961 0.81540 0.78521 0.83720 1.90905 1.54509 1.65064 1.35723 1.47777 1.23510 1.55153 1.09607 1.21476 0.93837 0.97386 0.88116 1.21947 0.99449 0.95761 0.99987 1.21610 0.93928 0.98719 1.00467 1.18984 0.95458 0.92288 0.91230 0.95424 1.21077 1.02748 1.36733 0.95461 0.92423 1.25051 0.98237 0.95419 0.95294 1.69899 1.36960 1.44843 0.99950 0.86606 0.83778 0.79783 0.77902 1.20727 1.21195 1.19925 1.22146 0.79979 0.91510 1.05471 0.92950 0.92836 0.92954 0.91794 0.91673 0.91769 0.90716 0.93049 0.91728 0.92271 0.77606 0.92274 0.92206 0.92439 0.92224 0.93135 0.93235 0.92685 0.94446 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.91 37.16 0.37 -0.92 16 2 C -0.13 -1.32 5.82 -26.73 -0.16 -1.48 16 3 C -0.12 -1.22 4.75 -26.73 -0.13 -1.35 16 4 C 0.16 2.13 2.54 -67.93 -0.17 1.96 16 5 H 0.08 1.36 7.65 -51.93 -0.40 0.97 16 6 C -0.16 -2.02 9.48 37.16 0.35 -1.67 16 7 N -0.75 -11.42 4.44 -58.67 -0.26 -11.68 16 8 C 0.70 14.57 8.26 -86.92 -0.72 13.85 16 9 O -0.58 -14.87 15.45 5.29 0.08 -14.79 16 10 N -0.62 -12.82 2.97 -178.49 -0.53 -13.35 16 11 C 0.12 1.82 6.43 -3.71 -0.02 1.80 16 12 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 13 C -0.11 -2.20 5.11 -26.68 -0.14 -2.33 16 14 C 0.04 0.99 2.25 -91.65 -0.21 0.79 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 16 C -0.52 -14.30 8.56 -34.44 -0.29 -14.60 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 18 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -26.05 11.39 55.43 0.63 -25.42 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.13 3.22 5.39 -3.71 -0.02 3.20 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.76 7.75 -51.93 -0.40 0.35 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 1.00 8.09 -51.93 -0.42 0.58 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.39 4.87 6.06 -40.82 -0.25 4.63 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.74 5.57 -51.93 -0.29 0.45 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.12 3.56 5.16 -51.93 -0.27 3.30 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -31.73 343.47 -9.22 -40.94 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.91 Total: 4.04 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.39 Total: -1.39 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.16 Total: -50.45 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.79 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.73 -9.22 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595427117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.513 kcal (2) G-P(sol) polarization free energy of solvation -31.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds