Wall clock time and date at job start Mon Mar 30 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47309 * 2 1 4 4 C 1.52999 * 109.47309 * 180.02562 * 3 2 1 5 5 H 1.09006 * 109.47391 * 54.99515 * 4 3 2 6 6 C 1.52999 * 109.47488 * 175.00083 * 4 3 2 7 7 N 1.46506 * 109.47214 * 294.99859 * 4 3 2 8 8 C 1.34770 * 120.00206 * 154.99482 * 7 4 3 9 9 O 1.21581 * 120.00221 * 5.07564 * 8 7 4 10 10 N 1.34778 * 120.00085 * 185.06735 * 8 7 4 11 11 C 1.46928 * 120.62994 * 354.94984 * 10 8 7 12 12 C 1.53195 * 108.77950 * 126.41013 * 11 10 8 13 13 C 1.53047 * 109.30849 * 54.63307 * 12 11 10 14 14 C 1.53042 * 109.53787 * 298.63562 * 13 12 11 15 15 H 1.09003 * 109.49915 * 301.41658 * 14 13 12 16 16 C 1.50702 * 109.52201 * 181.33625 * 14 13 12 17 17 H 1.07998 * 119.99880 * 0.07978 * 16 14 13 18 18 C 1.37876 * 119.99985 * 180.08249 * 16 14 13 19 19 N 1.31512 * 119.99836 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 119.99738 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47271 * 90.00367 * 20 18 16 22 22 H 1.48508 * 109.46751 * 209.99972 * 20 18 16 23 23 H 1.48497 * 109.47316 * 329.99868 * 20 18 16 24 24 C 1.46929 * 120.63184 * 174.96835 * 10 8 7 25 25 H 1.09002 * 109.46692 * 60.00398 * 1 2 3 26 26 H 1.09000 * 109.47165 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47200 * 300.00300 * 1 2 3 28 28 H 1.09001 * 109.47200 * 239.99700 * 2 1 3 29 29 H 1.09002 * 109.47147 * 119.99879 * 2 1 3 30 30 H 1.09001 * 109.47235 * 59.99721 * 3 2 1 31 31 H 1.08997 * 109.47376 * 299.99477 * 3 2 1 32 32 H 1.08998 * 109.46985 * 59.99935 * 6 4 3 33 33 H 1.09004 * 109.47244 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.46693 * 299.99624 * 6 4 3 35 35 H 0.97005 * 119.99639 * 335.00466 * 7 4 3 36 36 H 1.09005 * 109.58649 * 246.19748 * 11 10 8 37 37 H 1.09000 * 109.58835 * 6.62272 * 11 10 8 38 38 H 1.08996 * 109.49549 * 174.58648 * 12 11 10 39 39 H 1.08996 * 109.49409 * 294.68653 * 12 11 10 40 40 H 1.08995 * 109.45425 * 178.61594 * 13 12 11 41 41 H 1.08993 * 109.45687 * 58.65963 * 13 12 11 42 42 H 0.97004 * 119.99741 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.58284 * 113.80383 * 24 10 8 44 44 H 1.08998 * 109.70229 * 353.44503 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8530 -0.8427 6 6 4.0800 2.8794 -0.1263 7 7 4.0589 0.8585 1.2509 8 6 5.2808 0.2919 1.2981 9 8 6.0140 0.3464 0.3298 10 7 5.6901 -0.3351 2.4188 11 6 4.8626 -0.3146 3.6327 12 6 4.6387 -1.7559 4.1012 13 6 5.9928 -2.4477 4.2751 14 6 6.7248 -2.4846 2.9316 15 1 6.1152 -3.0144 2.1996 16 6 8.0438 -3.1949 3.0962 17 1 8.3313 -3.5828 4.0623 18 6 8.8834 -3.3494 2.0136 19 7 8.5330 -2.8774 0.8371 20 14 10.5185 -4.2291 2.2178 21 1 10.3342 -5.6811 1.9668 22 1 11.5004 -3.6799 1.2484 23 1 11.0208 -4.0256 3.6003 24 6 6.9724 -1.0517 2.4499 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.7171 3.4687 0.7157 33 1 5.1701 2.8794 -0.1263 34 1 3.7164 3.3138 -1.0575 35 1 3.5030 0.8796 2.0456 36 1 5.3736 0.2483 4.4139 37 1 3.9021 0.1513 3.4125 38 1 4.1079 -1.7506 5.0532 39 1 4.0488 -2.2924 3.3582 40 1 5.8372 -3.4657 4.6320 41 1 6.5916 -1.8964 5.0000 42 1 9.1235 -2.9864 0.0753 43 1 7.6554 -0.5488 3.1346 44 1 7.4063 -1.0720 1.4502 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595427117.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:10 Heat of formation + Delta-G solvation = -72.119014 kcal Electronic energy + Delta-G solvation = -21733.314622 eV Core-core repulsion = 18683.890811 eV Total energy + Delta-G solvation = -3049.423811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.33613 -38.82075 -37.43867 -35.36904 -34.31171 -33.42149 -31.76104 -31.06067 -27.55611 -27.01791 -26.02706 -23.47573 -22.88290 -22.00370 -21.47526 -20.38358 -19.03969 -18.18674 -17.44167 -16.63587 -16.23036 -15.91650 -15.54979 -15.21388 -15.11127 -14.83271 -14.65307 -14.32326 -14.20343 -13.73963 -13.56484 -13.55214 -13.11036 -12.88545 -12.86080 -12.68091 -12.36829 -12.25644 -12.21526 -11.85638 -11.81804 -11.63373 -11.59676 -11.48356 -11.18496 -10.94413 -10.80282 -10.50901 -10.07999 -9.22522 -8.09777 -6.27335 1.40387 1.41736 1.52584 1.84651 2.31945 2.42434 3.08337 3.21029 3.76085 4.03396 4.08238 4.13279 4.17363 4.29153 4.41094 4.52318 4.60874 4.65645 4.72550 4.79743 4.81576 4.84401 4.87343 4.92246 5.03179 5.09219 5.11333 5.27495 5.28318 5.29934 5.31543 5.35542 5.38927 5.50843 5.56998 5.67376 5.73751 5.90536 5.99512 6.21553 6.37532 6.86186 7.20453 7.42904 7.75598 8.93540 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.004916 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.292557 B = 5693.897384 C = 6094.373140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C -0.111 4.111 4 C 0.154 3.846 5 H 0.048 0.952 6 C -0.156 4.156 7 N -0.727 5.727 8 C 0.693 3.307 9 O -0.642 6.642 10 N -0.629 5.629 11 C 0.110 3.890 12 C -0.125 4.125 13 C -0.105 4.105 14 C 0.039 3.961 15 H -0.016 1.016 16 C -0.537 4.537 17 H 0.063 0.937 18 C 0.009 3.991 19 N -0.916 5.916 20 Si 0.958 3.042 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.144 3.856 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.405 0.595 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.259 0.741 43 H 0.030 0.970 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.056 9.835 4.194 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.148 4.148 4 C 0.049 3.951 5 H 0.066 0.934 6 C -0.214 4.214 7 N -0.386 5.386 8 C 0.395 3.605 9 O -0.524 6.524 10 N -0.365 5.365 11 C -0.012 4.012 12 C -0.163 4.163 13 C -0.142 4.142 14 C 0.020 3.980 15 H 0.002 0.998 16 C -0.575 4.575 17 H 0.081 0.919 18 C -0.190 4.190 19 N -0.555 5.555 20 Si 0.783 3.217 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.185 1.185 24 C 0.021 3.979 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.085 0.915 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.245 0.755 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.491 9.886 3.323 19.512 hybrid contribution 1.270 -0.804 -0.156 1.511 sum -15.221 9.082 3.167 18.005 Atomic orbital electron populations 1.21727 0.94108 1.01810 1.02629 1.21533 0.97034 0.96806 1.01242 1.21855 0.90865 0.97340 1.04765 1.20932 0.95124 0.93806 0.85278 0.93371 1.22127 1.00072 0.95870 1.03339 1.45230 1.15712 1.63009 1.14685 1.16241 0.82666 0.78679 0.82962 1.90864 1.56554 1.67127 1.37842 1.47679 1.22864 1.54554 1.11437 1.21851 0.95042 0.97909 0.86372 1.21901 0.97110 0.95114 1.02142 1.21501 0.95839 0.99713 0.97181 1.18910 0.94563 0.91484 0.93082 0.99790 1.21538 1.03828 1.36588 0.95552 0.91900 1.25916 1.01981 0.96220 0.94926 1.70111 1.38210 1.46391 1.00760 0.85551 0.79245 0.78601 0.78258 1.20029 1.21442 1.18483 1.21534 0.81971 0.92086 1.02308 0.91983 0.93135 0.91469 0.93922 0.92984 0.89144 0.88674 0.90731 0.95598 0.89942 0.75547 0.90421 0.88174 0.87717 0.93222 0.92998 0.92464 0.93224 0.95118 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.13 -2.48 5.82 30.59 0.18 -2.30 16 3 C -0.11 -1.85 4.75 30.59 0.15 -1.71 16 4 C 0.15 4.01 2.54 44.99 0.11 4.12 16 5 H 0.05 1.63 7.65 -2.38 -0.02 1.61 16 6 C -0.16 -3.69 9.48 71.98 0.68 -3.00 16 7 N -0.73 -21.46 4.44 -457.81 -2.03 -23.50 16 8 C 0.69 29.62 8.26 179.06 1.48 31.10 16 9 O -0.64 -34.90 15.45 -3.97 -0.06 -34.96 16 10 N -0.63 -26.12 2.97 -836.89 -2.49 -28.61 16 11 C 0.11 3.15 6.43 86.36 0.56 3.71 16 12 C -0.12 -3.66 6.08 30.68 0.19 -3.47 16 13 C -0.10 -4.08 5.11 30.62 0.16 -3.93 16 14 C 0.04 2.02 2.25 -11.46 -0.03 1.99 16 15 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 16 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 18 C 0.01 0.51 5.30 84.65 0.45 0.96 16 19 N -0.92 -57.33 11.39 21.45 0.24 -57.08 16 20 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 C 0.14 7.48 5.39 86.36 0.47 7.95 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.02 0.80 8.09 -2.38 -0.02 0.78 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.41 8.95 6.06 -92.70 -0.56 8.39 16 36 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 37 H 0.10 2.04 5.57 -2.39 -0.01 2.03 16 38 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 43 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.07 4.58 5.16 -2.39 -0.01 4.57 16 Total: -1.00 -76.35 343.47 3.40 -72.96 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.39 Total: 19.96 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.32 Total: 4.08 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -4.28 Total: -109.19 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.06 Total: -34.96 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -76.35 3.40 -72.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595427117.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.837 kcal (2) G-P(sol) polarization free energy of solvation -76.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds