Wall clock time and date at job start Mon Mar 30 2020 01:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46908 * 110.99409 * 2 1 4 4 C 1.46898 * 110.99963 * 123.95171 * 2 1 3 5 5 C 1.52997 * 109.47008 * 75.64343 * 4 2 1 6 6 C 1.50704 * 115.54909 * 55.81846 * 5 4 2 7 7 O 1.21283 * 120.00280 * 240.79164 * 6 5 4 8 8 N 1.34775 * 119.99838 * 60.51321 * 6 5 4 9 9 C 1.46503 * 120.00001 * 174.97815 * 8 6 5 10 10 C 1.53000 * 109.47393 * 183.88688 * 9 8 6 11 11 C 1.52999 * 109.46789 * 300.25444 * 10 9 8 12 12 C 1.52995 * 109.46938 * 60.25407 * 10 9 8 13 13 C 1.50696 * 109.47230 * 180.25520 * 10 9 8 14 14 H 1.08005 * 119.99913 * 357.61718 * 13 10 9 15 15 C 1.37877 * 120.00042 * 177.61241 * 13 10 9 16 16 N 1.31518 * 119.99826 * 197.41627 * 15 13 10 17 17 Si 1.86796 * 119.99858 * 17.41453 * 15 13 10 18 18 H 1.48495 * 109.47055 * 84.62385 * 17 15 13 19 19 H 1.48504 * 109.46901 * 204.62284 * 17 15 13 20 20 H 1.48497 * 109.47294 * 324.62391 * 17 15 13 21 21 C 1.52992 * 117.50139 * 201.48668 * 5 4 2 22 22 C 1.53001 * 117.50196 * 270.14929 * 5 4 2 23 23 H 1.08997 * 109.47028 * 295.15925 * 1 2 3 24 24 H 1.09000 * 109.47101 * 55.15552 * 1 2 3 25 25 H 1.08999 * 109.46745 * 175.15065 * 1 2 3 26 26 H 1.09004 * 109.46213 * 183.95202 * 3 2 1 27 27 H 1.08996 * 109.47200 * 303.94983 * 3 2 1 28 28 H 1.08995 * 109.46795 * 63.95505 * 3 2 1 29 29 H 1.08998 * 109.47046 * 315.64609 * 4 2 1 30 30 H 1.09005 * 109.46654 * 195.64491 * 4 2 1 31 31 H 0.96997 * 120.00417 * 354.98199 * 8 6 5 32 32 H 1.09007 * 109.46978 * 303.89067 * 9 8 6 33 33 H 1.09004 * 109.46897 * 63.88559 * 9 8 6 34 34 H 1.09005 * 109.47387 * 72.44498 * 11 10 9 35 35 H 1.08999 * 109.46929 * 192.44744 * 11 10 9 36 36 H 1.09006 * 109.47300 * 312.44648 * 11 10 9 37 37 H 1.09000 * 109.47232 * 60.00129 * 12 10 9 38 38 H 1.09002 * 109.46932 * 180.02562 * 12 10 9 39 39 H 1.08997 * 109.47278 * 299.99782 * 12 10 9 40 40 H 0.96999 * 119.99927 * 179.97438 * 16 15 13 41 41 H 1.09001 * 117.50639 * 215.00307 * 21 5 4 42 42 H 1.09008 * 117.50018 * 0.02802 * 21 5 4 43 43 H 1.08995 * 117.49571 * 359.97416 * 22 5 4 44 44 H 1.08999 * 117.50060 * 144.97143 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.8443 -2.2626 0.8584 6 6 2.4804 -2.7534 -0.4166 7 8 1.7962 -3.2636 -1.2784 8 7 3.8087 -2.6202 -0.6017 9 6 4.4439 -3.1947 -1.7903 10 6 5.9578 -2.9883 -1.7097 11 6 6.2650 -1.4914 -1.6341 12 6 6.5016 -3.6844 -0.4605 13 6 6.6106 -3.5737 -2.9354 14 1 6.0105 -4.0797 -3.6772 15 6 7.9738 -3.4632 -3.1097 16 7 8.5021 -3.6533 -4.2990 17 14 9.0702 -3.0436 -1.6568 18 1 9.4014 -4.2847 -0.9119 19 1 10.3214 -2.4117 -2.1471 20 1 8.3594 -2.1007 -0.7563 21 6 1.8490 -3.2094 2.0601 22 6 0.5457 -2.9370 1.3051 23 1 -0.3633 0.4369 0.9301 24 1 -0.3633 0.5872 -0.8434 25 1 -0.3633 -1.0240 -0.0869 26 1 3.0828 1.3433 -0.0708 27 1 1.5898 1.9164 -0.8524 28 1 1.7043 1.8724 0.9233 29 1 1.4397 -0.5065 2.0386 30 1 3.0496 -0.5274 1.2795 31 1 4.3442 -2.1441 0.0520 32 1 4.2247 -4.2614 -1.8397 33 1 4.0571 -2.7026 -2.6827 34 1 5.9880 -1.1129 -0.6501 35 1 7.3304 -1.3304 -1.7987 36 1 5.6953 -0.9643 -2.3995 37 1 6.2827 -4.7508 -0.5145 38 1 7.5801 -3.5369 -0.4029 39 1 6.0295 -3.2609 0.4259 40 1 9.4612 -3.5753 -4.4218 41 1 2.3121 -4.1874 1.9286 42 1 1.9594 -2.7661 3.0498 43 1 -0.2008 -2.3145 1.7982 44 1 0.1511 -3.7353 0.6766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602158642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:18 Heat of formation + Delta-G solvation = 4.769811 kcal Electronic energy + Delta-G solvation = -21834.291210 eV Core-core repulsion = 18788.201548 eV Total energy + Delta-G solvation = -3046.089662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.98645 -37.78770 -36.60847 -35.57730 -33.15601 -31.41731 -28.20283 -27.66448 -26.34486 -26.12063 -24.92677 -22.90085 -22.51237 -21.95005 -19.30703 -18.86694 -16.91380 -16.07637 -15.65608 -15.52838 -15.29987 -14.88676 -14.83697 -14.38062 -14.12415 -13.58083 -13.00796 -12.80774 -12.67581 -12.63821 -12.30268 -12.19374 -12.02869 -11.97958 -11.95338 -11.79373 -11.56951 -11.21113 -10.49176 -10.40858 -10.33092 -10.15737 -10.08721 -10.01191 -9.37076 -9.09626 -8.67798 -8.44596 -8.41682 -8.31863 -6.13145 -4.07684 3.01821 3.26165 3.33947 3.39884 3.49752 3.76076 3.94098 4.38533 4.60901 4.69134 4.87415 5.05663 5.08070 5.16851 5.17745 5.30822 5.35423 5.48748 5.52719 5.56158 5.73332 5.78603 5.81384 5.87899 5.90264 6.04684 6.11398 6.13301 6.41992 6.55087 6.59414 6.70714 6.76296 6.87685 6.88848 6.91454 7.07079 7.29350 7.48351 7.77412 8.11253 8.48829 8.79043 8.94499 9.52424 10.99981 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.005089 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.101782 B = 5500.366212 C = 5757.483600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.026 3.974 4 C 0.098 3.902 5 C -0.151 4.151 6 C 0.560 3.440 7 O -0.546 6.546 8 N -0.716 5.716 9 C 0.145 3.855 10 C 0.029 3.971 11 C -0.138 4.138 12 C -0.146 4.146 13 C -0.514 4.514 14 H 0.076 0.924 15 C 0.077 3.923 16 N -0.889 5.889 17 Si 0.880 3.120 18 H -0.286 1.286 19 H -0.304 1.304 20 H -0.248 1.248 21 C -0.157 4.157 22 C -0.147 4.147 23 H 0.021 0.979 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.022 0.978 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.394 0.606 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.021 0.979 35 H 0.054 0.946 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.041 0.959 39 H 0.028 0.972 40 H 0.264 0.736 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.096 0.904 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 7.559 15.042 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.264 5.264 3 C -0.122 4.122 4 C -0.030 4.030 5 C -0.155 4.155 6 C 0.345 3.655 7 O -0.424 6.424 8 N -0.366 5.366 9 C 0.022 3.978 10 C 0.028 3.972 11 C -0.195 4.195 12 C -0.203 4.203 13 C -0.551 4.551 14 H 0.094 0.906 15 C -0.126 4.126 16 N -0.525 5.525 17 Si 0.712 3.288 18 H -0.213 1.213 19 H -0.233 1.233 20 H -0.174 1.174 21 C -0.195 4.195 22 C -0.185 4.185 23 H 0.039 0.961 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.228 0.772 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -12.824 6.947 13.829 20.099 hybrid contribution 0.819 0.821 1.732 2.084 sum -12.005 7.768 15.561 21.134 Atomic orbital electron populations 1.22451 0.87080 1.02939 0.99815 1.61781 1.08270 1.13618 1.42760 1.22401 1.01098 0.88498 1.00239 1.21557 1.00505 0.89660 0.91318 1.21487 1.03898 0.94434 0.95649 1.19050 0.82143 0.78036 0.86310 1.90652 1.62407 1.45341 1.43956 1.46114 1.07461 1.56926 1.26065 1.21466 0.93118 0.97451 0.85739 1.18700 0.90718 0.92750 0.95022 1.22260 1.01533 0.97805 0.97951 1.22346 0.99628 1.00860 0.97446 1.20708 0.92780 1.37537 1.04109 0.90633 1.24950 0.98102 0.94320 0.95195 1.69994 1.12227 1.49082 1.21208 0.87400 0.79028 0.78866 0.83556 1.21326 1.23293 1.17401 1.23063 1.01439 1.00111 0.94927 1.22989 0.90303 1.02942 1.02217 0.96075 0.91549 0.90630 0.91085 0.91230 0.95945 0.93801 0.90170 0.77193 0.92260 0.92060 0.96034 0.92750 0.93410 0.92993 0.94074 0.95281 0.92624 0.88062 0.88139 0.88530 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.32 60.07 0.56 0.83 16 2 N -0.54 -6.51 4.66 -251.25 -1.17 -7.68 16 3 C 0.03 0.26 9.51 60.07 0.57 0.83 16 4 C 0.10 1.06 4.89 -3.83 -0.02 1.04 16 5 C -0.15 -1.89 1.83 -155.66 -0.28 -2.18 16 6 C 0.56 9.60 6.82 -10.98 -0.07 9.53 16 7 O -0.55 -11.55 16.59 5.55 0.09 -11.46 16 8 N -0.72 -12.29 4.98 -60.29 -0.30 -12.59 16 9 C 0.14 3.00 4.47 -4.04 -0.02 2.98 16 10 C 0.03 0.65 0.50 -155.67 -0.08 0.57 16 11 C -0.14 -2.86 7.42 37.16 0.28 -2.58 16 12 C -0.15 -2.98 7.57 37.16 0.28 -2.70 16 13 C -0.51 -13.95 8.61 -34.44 -0.30 -14.25 16 14 H 0.08 2.26 7.99 -52.48 -0.42 1.84 16 15 C 0.08 2.16 5.25 -17.82 -0.09 2.06 16 16 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 17 Si 0.88 21.09 22.84 -169.99 -3.88 17.20 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.30 -7.46 7.11 56.52 0.40 -7.06 16 20 H -0.25 -5.41 4.67 56.52 0.26 -5.15 16 21 C -0.16 -1.60 9.96 -26.70 -0.27 -1.86 16 22 C -0.15 -1.61 8.33 -26.69 -0.22 -1.83 16 23 H 0.02 0.19 8.07 -51.93 -0.42 -0.23 16 24 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 25 H 0.07 0.87 6.39 -51.93 -0.33 0.54 16 26 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 27 H 0.07 0.67 8.11 -51.93 -0.42 0.25 16 28 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.04 0.40 7.91 -51.93 -0.41 -0.01 16 30 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 31 H 0.39 5.99 6.35 -40.82 -0.26 5.73 16 32 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 33 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.02 0.37 7.11 -51.93 -0.37 0.00 16 35 H 0.05 1.20 4.23 -51.93 -0.22 0.98 16 36 H 0.05 0.99 8.09 -51.93 -0.42 0.57 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.88 2.49 -51.93 -0.13 0.75 16 39 H 0.03 0.49 6.96 -51.93 -0.36 0.13 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.10 0.85 8.02 -51.93 -0.42 0.44 16 44 H 0.10 1.31 7.91 -51.93 -0.41 0.90 16 LS Contribution 337.27 15.07 5.08 5.08 Total: -1.00 -31.59 337.27 -6.72 -38.31 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.65 Total: 4.62 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 0.34 Total: -7.55 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.70 Total: -46.21 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -3.88 Total: 17.20 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.59 -6.72 -38.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602158642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.081 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds