Wall clock time and date at job start Mon Mar 30 2020 01:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46908 * 110.99409 * 2 1 4 4 C 1.46898 * 110.99963 * 123.95171 * 2 1 3 5 5 C 1.52997 * 109.47008 * 75.64343 * 4 2 1 6 6 C 1.50704 * 115.54909 * 55.81846 * 5 4 2 7 7 O 1.21283 * 120.00280 * 240.79164 * 6 5 4 8 8 N 1.34775 * 119.99838 * 60.51321 * 6 5 4 9 9 C 1.46503 * 120.00001 * 174.97815 * 8 6 5 10 10 C 1.53000 * 109.47393 * 183.88688 * 9 8 6 11 11 C 1.52999 * 109.46789 * 300.25444 * 10 9 8 12 12 C 1.52995 * 109.46938 * 60.25407 * 10 9 8 13 13 C 1.50696 * 109.47230 * 180.25520 * 10 9 8 14 14 H 1.08005 * 119.99913 * 357.61718 * 13 10 9 15 15 C 1.37877 * 120.00042 * 177.61241 * 13 10 9 16 16 N 1.31518 * 119.99826 * 197.41627 * 15 13 10 17 17 Si 1.86796 * 119.99858 * 17.41453 * 15 13 10 18 18 H 1.48495 * 109.47055 * 84.62385 * 17 15 13 19 19 H 1.48504 * 109.46901 * 204.62284 * 17 15 13 20 20 H 1.48497 * 109.47294 * 324.62391 * 17 15 13 21 21 C 1.52992 * 117.50139 * 201.48668 * 5 4 2 22 22 C 1.53001 * 117.50196 * 270.14929 * 5 4 2 23 23 H 1.08997 * 109.47028 * 295.15925 * 1 2 3 24 24 H 1.09000 * 109.47101 * 55.15552 * 1 2 3 25 25 H 1.08999 * 109.46745 * 175.15065 * 1 2 3 26 26 H 1.09004 * 109.46213 * 183.95202 * 3 2 1 27 27 H 1.08996 * 109.47200 * 303.94983 * 3 2 1 28 28 H 1.08995 * 109.46795 * 63.95505 * 3 2 1 29 29 H 1.08998 * 109.47046 * 315.64609 * 4 2 1 30 30 H 1.09005 * 109.46654 * 195.64491 * 4 2 1 31 31 H 0.96997 * 120.00417 * 354.98199 * 8 6 5 32 32 H 1.09007 * 109.46978 * 303.89067 * 9 8 6 33 33 H 1.09004 * 109.46897 * 63.88559 * 9 8 6 34 34 H 1.09005 * 109.47387 * 72.44498 * 11 10 9 35 35 H 1.08999 * 109.46929 * 192.44744 * 11 10 9 36 36 H 1.09006 * 109.47300 * 312.44648 * 11 10 9 37 37 H 1.09000 * 109.47232 * 60.00129 * 12 10 9 38 38 H 1.09002 * 109.46932 * 180.02562 * 12 10 9 39 39 H 1.08997 * 109.47278 * 299.99782 * 12 10 9 40 40 H 0.96999 * 119.99927 * 179.97438 * 16 15 13 41 41 H 1.09001 * 117.50639 * 215.00307 * 21 5 4 42 42 H 1.09008 * 117.50018 * 0.02802 * 21 5 4 43 43 H 1.08995 * 117.49571 * 359.97416 * 22 5 4 44 44 H 1.08999 * 117.50060 * 144.97143 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3716 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.8443 -2.2626 0.8584 6 6 2.4804 -2.7534 -0.4166 7 8 1.7962 -3.2636 -1.2784 8 7 3.8087 -2.6202 -0.6017 9 6 4.4439 -3.1947 -1.7903 10 6 5.9578 -2.9883 -1.7097 11 6 6.2650 -1.4914 -1.6341 12 6 6.5016 -3.6844 -0.4605 13 6 6.6106 -3.5737 -2.9354 14 1 6.0105 -4.0797 -3.6772 15 6 7.9738 -3.4632 -3.1097 16 7 8.5021 -3.6533 -4.2990 17 14 9.0702 -3.0436 -1.6568 18 1 9.4014 -4.2847 -0.9119 19 1 10.3214 -2.4117 -2.1471 20 1 8.3594 -2.1007 -0.7563 21 6 1.8490 -3.2094 2.0601 22 6 0.5457 -2.9370 1.3051 23 1 -0.3633 0.4369 0.9301 24 1 -0.3633 0.5872 -0.8434 25 1 -0.3633 -1.0240 -0.0869 26 1 3.0828 1.3433 -0.0708 27 1 1.5898 1.9164 -0.8524 28 1 1.7043 1.8724 0.9233 29 1 1.4397 -0.5065 2.0386 30 1 3.0496 -0.5274 1.2795 31 1 4.3442 -2.1441 0.0520 32 1 4.2247 -4.2614 -1.8397 33 1 4.0571 -2.7026 -2.6827 34 1 5.9880 -1.1129 -0.6501 35 1 7.3304 -1.3304 -1.7987 36 1 5.6953 -0.9643 -2.3995 37 1 6.2827 -4.7508 -0.5145 38 1 7.5801 -3.5369 -0.4029 39 1 6.0295 -3.2609 0.4259 40 1 9.4612 -3.5753 -4.4218 41 1 2.3121 -4.1874 1.9286 42 1 1.9594 -2.7661 3.0498 43 1 -0.2008 -2.3145 1.7982 44 1 0.1511 -3.7353 0.6766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602158642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:17 Heat of formation + Delta-G solvation = -18.918174 kcal Electronic energy + Delta-G solvation = -21835.318398 eV Core-core repulsion = 18788.201548 eV Total energy + Delta-G solvation = -3047.116850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.20698 -39.03647 -38.08172 -36.54660 -34.91851 -33.36335 -29.08907 -28.41634 -27.98963 -27.66752 -26.96273 -24.09119 -23.31466 -22.89856 -20.92055 -20.38459 -18.18874 -17.90960 -17.06474 -16.71032 -16.57411 -16.09137 -15.93094 -15.64906 -15.27923 -14.85708 -14.75683 -14.43334 -14.30143 -14.00819 -13.71619 -13.36602 -13.27789 -12.92014 -12.87079 -12.78211 -12.57162 -12.40197 -12.35252 -12.13466 -11.96571 -11.74908 -11.36956 -11.12342 -10.99741 -10.68964 -10.57760 -10.37623 -9.90690 -9.21430 -8.30287 -6.29768 1.37792 1.39274 1.51647 1.75937 2.33492 2.36206 2.69521 3.05436 3.14777 3.75345 3.85419 3.87782 4.08905 4.16229 4.31673 4.35270 4.42321 4.44758 4.58060 4.58722 4.74538 4.77749 4.79526 4.80531 4.83985 4.87317 4.94079 4.99732 5.00922 5.06235 5.08325 5.08630 5.20601 5.23941 5.46870 5.59757 5.74626 5.82151 6.12353 6.15921 6.32034 6.71719 6.77910 7.33836 7.43990 8.87138 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.005089 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.101782 B = 5500.366212 C = 5757.483600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.573 5.573 3 C 0.028 3.972 4 C 0.101 3.899 5 C -0.163 4.163 6 C 0.556 3.444 7 O -0.595 6.595 8 N -0.705 5.705 9 C 0.161 3.839 10 C 0.029 3.971 11 C -0.136 4.136 12 C -0.144 4.144 13 C -0.522 4.522 14 H 0.023 0.977 15 C 0.019 3.981 16 N -0.944 5.944 17 Si 0.941 3.059 18 H -0.281 1.281 19 H -0.313 1.313 20 H -0.202 1.202 21 C -0.134 4.134 22 C -0.147 4.147 23 H 0.043 0.957 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.408 0.592 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.037 0.963 37 H 0.044 0.956 38 H 0.037 0.963 39 H 0.072 0.928 40 H 0.265 0.735 41 H 0.092 0.908 42 H 0.137 0.863 43 H 0.123 0.877 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.911 9.489 19.704 25.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.297 5.297 3 C -0.120 4.120 4 C -0.027 4.027 5 C -0.166 4.166 6 C 0.343 3.657 7 O -0.476 6.476 8 N -0.355 5.355 9 C 0.037 3.963 10 C 0.028 3.972 11 C -0.193 4.193 12 C -0.201 4.201 13 C -0.560 4.560 14 H 0.042 0.958 15 C -0.179 4.179 16 N -0.583 5.583 17 Si 0.770 3.230 18 H -0.208 1.208 19 H -0.242 1.242 20 H -0.125 1.125 21 C -0.172 4.172 22 C -0.184 4.184 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.245 0.755 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.055 0.945 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.110 0.890 42 H 0.155 0.845 43 H 0.141 0.859 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.080 8.899 18.540 24.373 hybrid contribution 0.764 0.151 0.135 0.791 sum -12.316 9.050 18.676 24.132 Atomic orbital electron populations 1.22396 0.86673 1.02122 1.00814 1.61751 1.09023 1.14874 1.44091 1.22378 1.00794 0.87744 1.01065 1.21606 1.01476 0.87746 0.91823 1.21415 1.04943 0.96180 0.94102 1.19936 0.81570 0.76672 0.87473 1.90632 1.63379 1.47408 1.46211 1.45881 1.07864 1.56843 1.24943 1.20960 0.92786 0.96080 0.86458 1.18627 0.90780 0.93937 0.93828 1.22175 1.00698 0.96137 1.00289 1.22262 0.99450 1.00622 0.97723 1.21006 0.92843 1.36975 1.05150 0.95835 1.25860 0.99654 0.94371 0.98016 1.70153 1.12572 1.51549 1.24023 0.86396 0.76513 0.79757 0.80380 1.20812 1.24180 1.12515 1.23207 0.99624 0.99010 0.95341 1.23041 0.90886 1.02434 1.02076 0.93888 0.91939 0.92109 0.91359 0.91642 0.94051 0.91052 0.89279 0.75461 0.94378 0.95092 0.91570 0.93754 0.94375 0.93664 0.94480 0.90879 0.92664 0.88952 0.84512 0.85902 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 9.32 127.69 1.19 1.72 16 2 N -0.57 -12.30 4.66 -948.82 -4.42 -16.72 16 3 C 0.03 0.48 9.51 127.69 1.21 1.70 16 4 C 0.10 1.77 4.89 86.30 0.42 2.20 16 5 C -0.16 -3.61 1.83 -52.93 -0.10 -3.70 16 6 C 0.56 18.56 6.82 87.66 0.60 19.16 16 7 O -0.60 -25.87 16.59 -3.04 -0.05 -25.92 16 8 N -0.70 -23.05 4.98 -463.03 -2.30 -25.35 16 9 C 0.16 6.81 4.47 86.38 0.39 7.20 16 10 C 0.03 1.28 0.50 -52.93 -0.03 1.25 16 11 C -0.14 -5.26 7.42 71.98 0.53 -4.73 16 12 C -0.14 -5.40 7.57 71.98 0.55 -4.86 16 13 C -0.52 -29.42 8.61 25.60 0.22 -29.20 16 14 H 0.02 1.51 7.99 -2.91 -0.02 1.49 16 15 C 0.02 1.07 5.25 84.65 0.44 1.51 16 16 N -0.94 -59.16 13.96 21.45 0.30 -58.86 16 17 Si 0.94 42.64 22.84 68.60 1.57 44.20 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.31 -14.54 7.11 99.48 0.71 -13.84 16 20 H -0.20 -7.66 4.67 99.48 0.46 -7.19 16 21 C -0.13 -2.17 9.96 30.62 0.30 -1.87 16 22 C -0.15 -2.84 8.33 30.62 0.26 -2.58 16 23 H 0.04 0.61 8.07 -2.39 -0.02 0.59 16 24 H 0.06 1.19 8.11 -2.39 -0.02 1.17 16 25 H 0.06 1.32 6.39 -2.39 -0.02 1.30 16 26 H 0.07 1.19 8.07 -2.38 -0.02 1.17 16 27 H 0.06 1.15 8.11 -2.39 -0.02 1.13 16 28 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.90 7.91 -2.39 -0.02 0.88 16 30 H 0.09 1.39 7.89 -2.38 -0.02 1.37 16 31 H 0.41 10.82 6.35 -92.71 -0.59 10.23 16 32 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.07 1.97 7.11 -2.38 -0.02 1.96 16 35 H 0.04 1.81 4.23 -2.39 -0.01 1.80 16 36 H 0.04 1.53 8.09 -2.38 -0.02 1.51 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.04 1.43 2.49 -2.39 -0.01 1.43 16 39 H 0.07 2.11 6.96 -2.39 -0.02 2.09 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.14 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.12 1.71 8.02 -2.39 -0.02 1.69 16 44 H 0.08 1.96 7.91 -2.39 -0.02 1.94 16 Total: -1.00 -73.96 337.27 1.22 -72.73 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.14 Total: 22.12 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 5.99 Total: -12.20 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -6.43 Total: -100.94 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.05 Total: -25.92 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 1.57 Total: 44.20 kcal Total: -73.96 1.22 -72.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602158642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.817 kcal (2) G-P(sol) polarization free energy of solvation -73.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds