Wall clock time and date at job start Mon Mar 30 2020 00:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46918 * 2 1 4 4 C 1.53000 * 109.47456 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47137 * 54.99610 * 4 3 2 6 6 C 1.53004 * 109.46595 * 295.00058 * 4 3 2 7 7 C 1.50705 * 109.47234 * 175.00096 * 4 3 2 8 8 O 1.21280 * 119.99914 * 21.82484 * 7 4 3 9 9 N 1.34773 * 119.99746 * 201.82287 * 7 4 3 10 10 C 1.47084 * 120.88209 * 4.67732 * 9 7 4 11 11 C 1.53694 * 108.27690 * 128.75435 * 10 9 7 12 12 N 1.46892 * 109.25804 * 54.07997 * 11 10 9 13 13 C 1.46907 * 111.00222 * 172.60828 * 12 11 10 14 14 C 1.50697 * 109.46722 * 294.30521 * 13 12 11 15 15 H 1.07991 * 120.00686 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99500 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00132 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99778 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47121 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47108 * 120.00184 * 18 16 14 21 21 H 1.48502 * 109.47062 * 240.00206 * 18 16 14 22 22 C 1.46897 * 111.27163 * 296.75665 * 12 11 10 23 23 C 1.47075 * 120.87936 * 184.95074 * 9 7 4 24 24 H 1.09004 * 109.46696 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47630 * 299.99534 * 1 2 3 26 26 H 1.08999 * 109.47865 * 60.00284 * 1 2 3 27 27 H 1.09001 * 109.47630 * 240.00466 * 2 1 3 28 28 H 1.08999 * 109.47865 * 119.99716 * 2 1 3 29 29 H 1.09001 * 109.47288 * 60.00100 * 3 2 1 30 30 H 1.09001 * 109.47271 * 300.00120 * 3 2 1 31 31 H 1.09006 * 109.46888 * 185.79995 * 6 4 3 32 32 H 1.08996 * 109.47156 * 305.79705 * 6 4 3 33 33 H 1.08996 * 109.47139 * 65.80547 * 6 4 3 34 34 H 1.09003 * 109.62606 * 248.52201 * 10 9 7 35 35 H 1.08994 * 109.62703 * 9.10287 * 10 9 7 36 36 H 1.09001 * 109.64363 * 294.07762 * 11 10 9 37 37 H 1.09000 * 109.42420 * 173.95167 * 11 10 9 38 38 H 1.09006 * 109.46515 * 54.30164 * 13 12 11 39 39 H 1.09000 * 109.47090 * 174.30331 * 13 12 11 40 40 H 0.97000 * 119.99738 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.49553 * 303.14590 * 22 12 11 42 42 H 1.09002 * 109.51847 * 183.07792 * 22 12 11 43 43 H 1.08998 * 109.63475 * 350.90121 * 23 9 7 44 44 H 1.09001 * 109.62645 * 111.48320 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9329 0.8533 -0.8426 6 6 4.0804 0.8328 1.3065 7 6 4.0721 2.8582 -0.1245 8 8 3.3550 3.7854 0.1868 9 7 5.3181 3.0936 -0.5811 10 6 6.1673 1.9922 -1.0599 11 6 6.7024 2.3660 -2.4513 12 7 7.3654 3.6749 -2.3799 13 6 8.0431 3.9915 -3.6442 14 6 9.1739 3.0201 -3.8648 15 1 9.3698 2.2454 -3.1385 16 6 9.9584 3.1205 -4.9943 17 7 9.7202 4.0643 -5.8786 18 14 11.3606 1.9168 -5.2675 19 1 11.4186 0.9590 -4.1343 20 1 11.1348 1.1729 -6.5327 21 1 12.6425 2.6615 -5.3531 22 6 6.4160 4.7338 -2.0120 23 6 5.8668 4.4578 -0.6082 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 5.1655 0.9263 1.3516 32 1 3.6351 1.3587 2.1510 33 1 3.8045 -0.2208 1.3479 34 1 6.9995 1.8457 -0.3713 35 1 5.5779 1.0778 -1.1263 36 1 5.8762 2.4150 -3.1606 37 1 7.4190 1.6127 -2.7785 38 1 7.3321 3.9144 -4.4668 39 1 8.4391 5.0061 -3.6000 40 1 10.2723 4.1351 -6.6730 41 1 5.5939 4.7498 -2.7275 42 1 6.9245 5.6979 -2.0206 43 1 5.0789 5.1743 -0.3759 44 1 6.6708 4.5437 0.1228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:36 Heat of formation + Delta-G solvation = -48.991391 kcal Electronic energy + Delta-G solvation = -21218.975337 eV Core-core repulsion = 18170.554415 eV Total energy + Delta-G solvation = -3048.420922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.20207 -37.71006 -36.01008 -34.41350 -32.60407 -32.04708 -30.61912 -28.23456 -26.81499 -25.73032 -24.00171 -23.17805 -21.96518 -21.11239 -20.03036 -18.44748 -17.11898 -16.41069 -15.79019 -15.64123 -14.99942 -14.77250 -14.44629 -14.25341 -13.84034 -13.77367 -13.68539 -13.43220 -12.82348 -12.48304 -12.35701 -12.28201 -12.10237 -11.91627 -11.40200 -11.31086 -11.13908 -11.12771 -10.99104 -10.85083 -10.73214 -10.70831 -10.57115 -10.51458 -9.91012 -9.45429 -9.28393 -8.51955 -8.41604 -7.34323 -6.08418 -4.10558 2.76177 3.14722 3.26984 3.34777 3.38549 4.36715 4.46021 4.59568 4.72090 4.80156 4.99751 5.04703 5.10045 5.25137 5.27577 5.38597 5.41801 5.47915 5.55002 5.61621 5.63034 5.67794 5.70828 5.76519 5.80961 5.87899 5.93760 5.98151 6.04427 6.16109 6.23361 6.28430 6.44189 6.45685 6.70806 7.20330 7.26211 7.59114 7.72753 7.99623 8.10207 8.31900 8.45421 8.96974 9.54129 11.02446 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027009 B = 0.003892 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.457237 B = 7192.638663 C = 7652.194063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.113 4.113 5 H 0.094 0.906 6 C -0.140 4.140 7 C 0.517 3.483 8 O -0.552 6.552 9 N -0.608 5.608 10 C 0.107 3.893 11 C 0.050 3.950 12 N -0.535 5.535 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.041 3.959 23 C 0.117 3.883 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.025 0.975 37 H 0.097 0.903 38 H -0.009 1.009 39 H 0.032 0.968 40 H 0.261 0.739 41 H 0.026 0.974 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.747 -7.734 11.866 19.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.112 0.888 6 C -0.198 4.198 7 C 0.306 3.694 8 O -0.431 6.431 9 N -0.341 5.341 10 C -0.015 4.015 11 C -0.080 4.080 12 N -0.261 5.261 13 C 0.068 3.932 14 C -0.548 4.548 15 H 0.083 0.917 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.088 4.088 23 C -0.005 4.005 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.043 0.957 37 H 0.115 0.885 38 H 0.009 0.991 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.099 0.901 43 H 0.105 0.895 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.693 -7.183 12.217 19.025 hybrid contribution 0.358 -0.478 -1.099 1.251 sum -12.335 -7.661 11.118 18.289 Atomic orbital electron populations 1.21760 0.95860 1.01404 1.01933 1.21590 0.95916 0.96687 1.02111 1.21449 0.92412 0.96644 1.03325 1.21370 0.97563 0.93832 1.00656 0.88817 1.21757 1.01447 1.00961 0.95637 1.20644 0.80941 0.91334 0.76531 1.90646 1.55738 1.45942 1.50748 1.48253 1.14194 1.09090 1.62517 1.22166 0.93952 0.88664 0.96757 1.22418 0.97452 0.94507 0.93574 1.62077 1.26773 1.00201 1.37016 1.19736 0.92909 0.97551 0.82981 1.21171 1.13642 1.14560 1.05397 0.91737 1.25005 0.97810 0.95869 0.95942 1.69969 1.39829 1.32774 1.11096 0.86439 0.82000 0.80955 0.78007 1.19616 1.21116 1.20993 1.22396 0.94872 0.96807 0.94733 1.21742 0.98063 0.82976 0.97769 0.92860 0.92749 0.92731 0.91973 0.91725 0.91018 0.91692 0.92028 0.92065 0.91320 0.90620 0.90005 0.95719 0.88480 0.99121 0.95024 0.92908 0.95588 0.90125 0.89493 0.91034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.15 0.37 -0.81 16 2 C -0.13 -1.04 5.69 -26.73 -0.15 -1.19 16 3 C -0.10 -1.07 4.09 -26.73 -0.11 -1.18 16 4 C -0.11 -1.25 1.92 -91.77 -0.18 -1.43 16 5 H 0.09 0.95 6.21 -51.93 -0.32 0.63 16 6 C -0.14 -1.29 8.76 37.16 0.33 -0.97 16 7 C 0.52 7.75 6.84 -10.98 -0.08 7.67 16 8 O -0.55 -10.01 15.61 5.56 0.09 -9.93 16 9 N -0.61 -9.22 3.00 -172.18 -0.52 -9.73 16 10 C 0.11 1.51 6.14 -3.36 -0.02 1.49 16 11 C 0.05 0.90 5.47 -3.47 -0.02 0.88 16 12 N -0.54 -11.11 4.62 -235.47 -1.09 -12.20 16 13 C 0.19 4.90 4.72 -4.97 -0.02 4.88 16 14 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 15 H 0.06 1.71 7.13 -52.49 -0.37 1.33 16 16 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 18 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.04 0.75 5.62 -3.70 -0.02 0.73 16 23 C 0.12 1.86 6.61 -3.60 -0.02 1.84 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.48 6.70 -51.93 -0.35 0.13 16 29 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.57 7.79 -51.93 -0.40 0.17 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.50 6.86 -51.93 -0.36 0.15 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.92 5.50 -51.93 -0.29 0.63 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 1.85 6.67 -51.93 -0.35 1.50 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 39 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 43 H 0.09 1.39 7.04 -51.93 -0.37 1.02 16 44 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 342.78 15.07 5.17 5.17 Total: -1.00 -30.82 342.78 -8.78 -39.61 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -7.83 Total: -2.70 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.31 Total: -0.73 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.87 Total: -47.43 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.82 -8.78 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.383 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds