Wall clock time and date at job start Mon Mar 30 2020 00:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46918 * 2 1 4 4 C 1.53000 * 109.47456 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47137 * 54.99610 * 4 3 2 6 6 C 1.53004 * 109.46595 * 295.00058 * 4 3 2 7 7 C 1.50705 * 109.47234 * 175.00096 * 4 3 2 8 8 O 1.21280 * 119.99914 * 21.82484 * 7 4 3 9 9 N 1.34773 * 119.99746 * 201.82287 * 7 4 3 10 10 C 1.47084 * 120.88209 * 4.67732 * 9 7 4 11 11 C 1.53694 * 108.27690 * 128.75435 * 10 9 7 12 12 N 1.46892 * 109.25804 * 54.07997 * 11 10 9 13 13 C 1.46907 * 111.00222 * 172.60828 * 12 11 10 14 14 C 1.50697 * 109.46722 * 294.30521 * 13 12 11 15 15 H 1.07991 * 120.00686 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99500 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00132 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99778 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47121 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47108 * 120.00184 * 18 16 14 21 21 H 1.48502 * 109.47062 * 240.00206 * 18 16 14 22 22 C 1.46897 * 111.27163 * 296.75665 * 12 11 10 23 23 C 1.47075 * 120.87936 * 184.95074 * 9 7 4 24 24 H 1.09004 * 109.46696 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47630 * 299.99534 * 1 2 3 26 26 H 1.08999 * 109.47865 * 60.00284 * 1 2 3 27 27 H 1.09001 * 109.47630 * 240.00466 * 2 1 3 28 28 H 1.08999 * 109.47865 * 119.99716 * 2 1 3 29 29 H 1.09001 * 109.47288 * 60.00100 * 3 2 1 30 30 H 1.09001 * 109.47271 * 300.00120 * 3 2 1 31 31 H 1.09006 * 109.46888 * 185.79995 * 6 4 3 32 32 H 1.08996 * 109.47156 * 305.79705 * 6 4 3 33 33 H 1.08996 * 109.47139 * 65.80547 * 6 4 3 34 34 H 1.09003 * 109.62606 * 248.52201 * 10 9 7 35 35 H 1.08994 * 109.62703 * 9.10287 * 10 9 7 36 36 H 1.09001 * 109.64363 * 294.07762 * 11 10 9 37 37 H 1.09000 * 109.42420 * 173.95167 * 11 10 9 38 38 H 1.09006 * 109.46515 * 54.30164 * 13 12 11 39 39 H 1.09000 * 109.47090 * 174.30331 * 13 12 11 40 40 H 0.97000 * 119.99738 * 179.97438 * 17 16 14 41 41 H 1.08996 * 109.49553 * 303.14590 * 22 12 11 42 42 H 1.09002 * 109.51847 * 183.07792 * 22 12 11 43 43 H 1.08998 * 109.63475 * 350.90121 * 23 9 7 44 44 H 1.09001 * 109.62645 * 111.48320 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 -0.0006 5 1 3.9329 0.8533 -0.8426 6 6 4.0804 0.8328 1.3065 7 6 4.0721 2.8582 -0.1245 8 8 3.3550 3.7854 0.1868 9 7 5.3181 3.0936 -0.5811 10 6 6.1673 1.9922 -1.0599 11 6 6.7024 2.3660 -2.4513 12 7 7.3654 3.6749 -2.3799 13 6 8.0431 3.9915 -3.6442 14 6 9.1739 3.0201 -3.8648 15 1 9.3698 2.2454 -3.1385 16 6 9.9584 3.1205 -4.9943 17 7 9.7202 4.0643 -5.8786 18 14 11.3606 1.9168 -5.2675 19 1 11.4186 0.9590 -4.1343 20 1 11.1348 1.1729 -6.5327 21 1 12.6425 2.6615 -5.3531 22 6 6.4160 4.7338 -2.0120 23 6 5.8668 4.4578 -0.6082 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3635 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6765 1.9564 -0.8900 31 1 5.1655 0.9263 1.3516 32 1 3.6351 1.3587 2.1510 33 1 3.8045 -0.2208 1.3479 34 1 6.9995 1.8457 -0.3713 35 1 5.5779 1.0778 -1.1263 36 1 5.8762 2.4150 -3.1606 37 1 7.4190 1.6127 -2.7785 38 1 7.3321 3.9144 -4.4668 39 1 8.4391 5.0061 -3.6000 40 1 10.2723 4.1351 -6.6730 41 1 5.5939 4.7498 -2.7275 42 1 6.9245 5.6979 -2.0206 43 1 5.0789 5.1743 -0.3759 44 1 6.6708 4.5437 0.1228 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602207573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:36 Heat of formation + Delta-G solvation = -68.396102 kcal Electronic energy + Delta-G solvation = -21219.816789 eV Core-core repulsion = 18170.554415 eV Total energy + Delta-G solvation = -3049.262374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.41705 -39.14426 -36.91934 -35.99102 -34.43626 -33.05429 -31.89411 -29.97605 -27.54449 -27.40344 -25.17104 -24.56494 -23.54819 -22.22269 -21.21861 -19.65069 -18.49807 -18.29116 -17.01405 -16.73295 -16.52190 -16.02434 -15.96906 -15.56182 -15.31844 -15.01739 -14.79446 -14.51567 -14.15817 -13.79371 -13.56591 -13.36995 -13.13034 -13.04862 -12.80719 -12.74162 -12.59781 -12.47213 -12.34741 -12.11261 -12.08122 -11.84813 -11.77121 -11.64879 -11.38416 -11.26958 -10.63111 -10.62630 -9.76989 -9.08231 -8.20439 -6.31038 1.43654 1.44667 1.57902 1.59244 1.96586 2.41348 3.11993 3.20535 3.44486 3.79090 3.93957 3.96667 4.02244 4.19821 4.22564 4.29843 4.34720 4.40151 4.43087 4.55247 4.67911 4.71332 4.81730 4.83365 4.91408 4.92416 4.95524 5.01205 5.03031 5.12606 5.18434 5.21692 5.24473 5.31425 5.44729 5.45690 5.52151 5.64023 6.01475 6.22042 6.43825 6.54287 6.85295 7.12831 7.39257 8.91295 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027009 B = 0.003892 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.457237 B = 7192.638663 C = 7652.194063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.098 4.098 4 C -0.108 4.108 5 H 0.111 0.889 6 C -0.136 4.136 7 C 0.513 3.487 8 O -0.589 6.589 9 N -0.612 5.612 10 C 0.119 3.881 11 C 0.048 3.952 12 N -0.538 5.538 13 C 0.208 3.792 14 C -0.520 4.520 15 H 0.072 0.928 16 C -0.001 4.001 17 N -0.938 5.938 18 Si 0.972 3.028 19 H -0.256 1.256 20 H -0.281 1.281 21 H -0.282 1.282 22 C 0.044 3.956 23 C 0.125 3.875 24 H 0.066 0.934 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.013 0.987 37 H 0.089 0.911 38 H -0.042 1.042 39 H 0.003 0.997 40 H 0.264 0.736 41 H 0.011 0.989 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 -10.510 13.318 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.136 4.136 4 C -0.129 4.129 5 H 0.128 0.872 6 C -0.194 4.194 7 C 0.303 3.697 8 O -0.469 6.469 9 N -0.344 5.344 10 C -0.003 4.003 11 C -0.081 4.081 12 N -0.262 5.262 13 C 0.081 3.919 14 C -0.558 4.558 15 H 0.090 0.910 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.180 1.180 20 H -0.206 1.206 21 H -0.208 1.208 22 C -0.085 4.085 23 C 0.002 3.998 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.136 0.864 36 H 0.031 0.969 37 H 0.107 0.893 38 H -0.025 1.025 39 H 0.022 0.978 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.435 -9.979 13.694 21.017 hybrid contribution 0.206 0.457 -1.559 1.638 sum -12.229 -9.522 12.134 19.683 Atomic orbital electron populations 1.21779 0.95692 1.02143 1.01545 1.21567 0.96073 0.94871 1.03200 1.21421 0.92225 0.98143 1.01781 1.21450 0.97683 0.91216 1.02505 0.87159 1.21773 1.01486 1.02228 0.93894 1.21419 0.80198 0.92731 0.75354 1.90630 1.56529 1.47523 1.52255 1.48365 1.14625 1.08897 1.62526 1.22184 0.94713 0.89368 0.94025 1.22490 0.96673 0.92699 0.96241 1.62020 1.28112 1.02089 1.34011 1.19389 0.92404 0.95939 0.84124 1.21484 1.13901 1.14772 1.05622 0.91013 1.25970 1.00628 0.97683 0.95602 1.70109 1.41220 1.34748 1.11752 0.85286 0.78114 0.78601 0.78327 1.17998 1.20650 1.20816 1.22417 0.93856 0.96269 0.95974 1.21584 0.98251 0.83941 0.95984 0.91527 0.92915 0.93458 0.91200 0.90182 0.92315 0.93621 0.91707 0.92803 0.88642 0.89322 0.86354 0.96918 0.89294 1.02470 0.97850 0.92756 0.97053 0.90190 0.89622 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.38 16 2 C -0.12 -1.65 5.69 30.59 0.17 -1.48 16 3 C -0.10 -1.93 4.09 30.59 0.13 -1.80 16 4 C -0.11 -2.11 1.92 -11.54 -0.02 -2.14 16 5 H 0.11 1.81 6.21 -2.39 -0.01 1.80 16 6 C -0.14 -2.04 8.76 71.98 0.63 -1.41 16 7 C 0.51 14.67 6.84 87.66 0.60 15.27 16 8 O -0.59 -21.21 15.61 -3.03 -0.05 -21.26 16 9 N -0.61 -17.62 3.00 -817.05 -2.45 -20.07 16 10 C 0.12 3.04 6.14 86.50 0.53 3.58 16 11 C 0.05 1.70 5.47 86.54 0.47 2.17 16 12 N -0.54 -22.54 4.62 -898.88 -4.15 -26.70 16 13 C 0.21 10.93 4.72 85.55 0.40 11.33 16 14 C -0.52 -28.35 8.41 25.60 0.22 -28.14 16 15 H 0.07 3.74 7.13 -2.92 -0.02 3.72 16 16 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 17 N -0.94 -55.96 13.29 21.45 0.28 -55.68 16 18 Si 0.97 42.84 29.54 68.60 2.03 44.86 16 19 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.04 1.63 5.62 86.38 0.49 2.12 16 23 C 0.13 3.91 6.61 86.35 0.57 4.49 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 0.88 6.70 -2.39 -0.02 0.87 16 29 H 0.06 1.31 8.05 -2.39 -0.02 1.29 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.95 7.79 -2.38 -0.02 0.93 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 0.95 6.86 -2.39 -0.02 0.93 16 34 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.12 2.18 5.50 -2.39 -0.01 2.17 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.09 3.30 6.67 -2.39 -0.02 3.29 16 38 H -0.04 -2.47 8.12 -2.38 -0.02 -2.49 16 39 H 0.00 0.19 7.97 -2.39 -0.02 0.18 16 40 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.08 2.92 7.99 -2.39 -0.02 2.90 16 43 H 0.09 2.73 7.04 -2.39 -0.02 2.71 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -68.08 342.78 1.97 -66.11 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.95 Total: 9.72 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 5.36 Total: 3.01 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -6.32 Total: -102.45 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -68.08 1.97 -66.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.282 kcal (2) G-P(sol) polarization free energy of solvation -68.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds