Wall clock time and date at job start Mon Mar 30 2020 00:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.52995 * 109.47492 * 175.23061 * 3 2 1 5 5 H 1.09002 * 109.39049 * 179.22878 * 4 3 2 6 6 C 1.50258 * 109.38411 * 298.91622 * 4 3 2 7 7 O 1.21286 * 118.62263 * 317.35611 * 6 4 3 8 8 N 1.33716 * 122.75262 * 137.35690 * 6 4 3 9 9 C 1.46005 * 122.92623 * 358.31120 * 8 6 4 10 10 C 1.52987 * 110.04069 * 18.16379 * 9 8 6 11 11 N 1.46900 * 109.38861 * 59.43294 * 4 3 2 12 12 C 1.46897 * 111.00066 * 66.17939 * 11 4 3 13 13 C 1.53005 * 109.46742 * 86.04041 * 12 11 4 14 14 H 1.08997 * 109.46981 * 53.32037 * 13 12 11 15 15 C 1.52998 * 109.47290 * 293.31414 * 13 12 11 16 16 C 1.53001 * 109.46981 * 173.31653 * 13 12 11 17 17 C 1.50696 * 109.47162 * 184.99874 * 16 13 12 18 18 H 1.07999 * 119.99885 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00115 * 179.97438 * 17 16 13 20 20 N 1.31519 * 119.99736 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00134 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46960 * 60.00395 * 21 19 17 23 23 H 1.48506 * 109.46889 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47228 * 300.00355 * 21 19 17 25 25 H 1.09003 * 109.46853 * 299.99532 * 1 2 3 26 26 H 1.08993 * 109.47437 * 60.00008 * 1 2 3 27 27 H 1.09004 * 109.46738 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47316 * 240.00214 * 2 1 3 29 29 H 1.08993 * 109.47437 * 119.99992 * 2 1 3 30 30 H 1.09003 * 109.47060 * 295.23019 * 3 2 1 31 31 H 1.09000 * 109.46776 * 55.22331 * 3 2 1 32 32 H 0.97005 * 118.54015 * 178.31689 * 8 6 4 33 33 H 1.08998 * 109.38018 * 257.98807 * 9 8 6 34 34 H 1.09003 * 109.37518 * 138.33748 * 9 8 6 35 35 H 1.09000 * 109.59191 * 189.93296 * 10 9 8 36 36 H 1.08998 * 109.59475 * 69.48418 * 10 9 8 37 37 H 1.08992 * 109.47164 * 206.03872 * 12 11 4 38 38 H 1.09003 * 109.47218 * 326.04519 * 12 11 4 39 39 H 1.09001 * 109.47106 * 73.08724 * 15 13 12 40 40 H 1.08995 * 109.47606 * 193.08888 * 15 13 12 41 41 H 1.09005 * 109.47017 * 313.09300 * 15 13 12 42 42 H 1.08999 * 109.47428 * 305.00405 * 16 13 12 43 43 H 1.09006 * 109.47117 * 64.99676 * 16 13 12 44 44 H 0.96999 * 120.00049 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4443 0.1199 5 1 3.9281 2.4720 0.1060 6 6 3.9644 0.7942 1.4144 7 8 3.3377 1.0633 2.4173 8 7 4.9817 -0.0687 1.5070 9 6 5.7755 -0.4864 0.3550 10 6 5.5858 0.5009 -0.7981 11 7 4.1442 0.7074 -1.0113 12 6 3.8943 1.4070 -2.2786 13 6 4.9914 2.4477 -2.5115 14 1 5.9678 1.9689 -2.4379 15 6 4.8823 3.5490 -1.4552 16 6 4.8270 3.0590 -3.9044 17 6 5.9765 3.9930 -4.1820 18 1 6.7475 4.1360 -3.4394 19 6 6.0446 4.6643 -5.3844 20 7 5.1059 4.4898 -6.2889 21 14 7.4699 5.8215 -5.7288 22 1 8.7468 5.0660 -5.6670 23 1 7.3102 6.4149 -7.0807 24 1 7.4854 6.9039 -4.7123 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7481 1.9311 -0.9297 31 1 1.6084 1.9804 0.8441 32 1 5.2022 -0.4334 2.3785 33 1 5.4569 -1.4791 0.0371 34 1 6.8287 -0.5186 0.6340 35 1 6.0349 0.0949 -1.7045 36 1 6.0581 1.4508 -0.5475 37 1 3.8962 0.6875 -3.0973 38 1 2.9253 1.9043 -2.2341 39 1 5.2255 3.1660 -0.4941 40 1 5.4999 4.3975 -1.7496 41 1 3.8436 3.8682 -1.3690 42 1 4.8157 2.2648 -4.6508 43 1 3.8894 3.6132 -3.9496 44 1 5.1535 4.9623 -7.1347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602479320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:01 Heat of formation + Delta-G solvation = -45.240440 kcal Electronic energy + Delta-G solvation = -21987.245733 eV Core-core repulsion = 18938.987464 eV Total energy + Delta-G solvation = -3048.258269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.76167 -37.98725 -35.69361 -34.90414 -33.20095 -31.69222 -30.10890 -28.24170 -27.03220 -26.14293 -23.81984 -23.25511 -22.01916 -21.22083 -19.29868 -18.32812 -17.38281 -16.83644 -16.37063 -15.66074 -15.00531 -14.78803 -14.60210 -14.50733 -14.15065 -13.81630 -13.41518 -12.97361 -12.72464 -12.42229 -12.25316 -11.98697 -11.93726 -11.68640 -11.42777 -11.20235 -10.97943 -10.97261 -10.87431 -10.65663 -10.56359 -10.43553 -10.29375 -9.75764 -9.70983 -9.45135 -9.14778 -9.08979 -8.38970 -7.95774 -6.03599 -4.05762 2.68247 3.26937 3.29301 3.34703 3.36326 3.94644 4.42040 4.54884 4.79152 4.93906 5.11098 5.18133 5.21232 5.28011 5.31975 5.48059 5.54844 5.66161 5.72058 5.75196 5.81148 5.81896 5.95784 5.98429 6.05174 6.14993 6.17862 6.26637 6.40116 6.45302 6.52712 6.69495 6.74160 6.89034 6.98745 7.13470 7.23242 7.29209 7.60889 7.75022 7.94878 8.23924 8.37859 9.00046 9.58138 11.07390 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.004744 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.636974 B = 5901.051683 C = 6453.945290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.100 4.100 4 C 0.047 3.953 5 H 0.097 0.903 6 C 0.532 3.468 7 O -0.557 6.557 8 N -0.721 5.721 9 C 0.115 3.885 10 C 0.028 3.972 11 N -0.521 5.521 12 C 0.051 3.949 13 C -0.120 4.120 14 H 0.064 0.936 15 C -0.144 4.144 16 C 0.031 3.969 17 C -0.517 4.517 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.895 5.895 21 Si 0.889 3.111 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.278 1.278 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.395 0.605 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.045 0.955 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 -10.227 12.022 15.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.138 4.138 4 C -0.064 4.064 5 H 0.114 0.886 6 C 0.319 3.681 7 O -0.435 6.435 8 N -0.373 5.373 9 C -0.010 4.010 10 C -0.100 4.100 11 N -0.246 5.246 12 C -0.076 4.076 13 C -0.140 4.140 14 H 0.083 0.917 15 C -0.201 4.201 16 C -0.006 4.006 17 C -0.556 4.556 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.230 0.770 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.695 -10.415 12.121 16.206 hybrid contribution 1.449 1.308 -0.042 1.952 sum -1.246 -9.107 12.079 15.179 Atomic orbital electron populations 1.21775 0.96429 1.01135 1.01512 1.21390 0.94921 0.96422 1.02333 1.21544 0.91280 0.98242 1.02715 1.22196 0.97703 0.98423 0.88064 0.88564 1.20212 0.78891 0.78160 0.90806 1.90718 1.52758 1.62691 1.37315 1.45583 1.33706 1.46371 1.11667 1.21561 0.94873 0.98797 0.85767 1.22579 0.90162 0.98693 0.98553 1.62859 1.11915 1.47566 1.02257 1.22556 0.99645 0.95826 0.89583 1.21888 0.97742 0.95166 0.99175 0.91733 1.22062 1.01286 1.00339 0.96411 1.19052 0.97141 0.95416 0.89020 1.21168 1.08283 1.25388 1.00731 0.92811 1.25003 0.96023 0.96946 0.96360 1.69948 1.33426 1.42842 1.07159 0.86713 0.82960 0.81271 0.77385 1.20307 1.21298 1.20334 0.93113 0.92786 0.93183 0.90833 0.92831 0.90619 0.90786 0.76977 0.91090 0.90547 0.88278 0.92683 0.90322 0.90737 0.94968 0.91100 0.93573 0.96526 0.96591 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 37.16 0.37 -1.31 16 2 C -0.11 -1.43 5.55 -26.73 -0.15 -1.57 16 3 C -0.10 -1.33 4.56 -26.73 -0.12 -1.45 16 4 C 0.05 0.66 1.91 -69.08 -0.13 0.52 16 5 H 0.10 1.44 4.11 -51.93 -0.21 1.22 16 6 C 0.53 7.65 6.12 -11.67 -0.07 7.58 16 7 O -0.56 -9.67 16.95 5.55 0.09 -9.58 16 8 N -0.72 -8.15 5.52 -61.06 -0.34 -8.48 16 9 C 0.11 1.08 7.39 -4.32 -0.03 1.05 16 10 C 0.03 0.34 4.07 -3.68 -0.01 0.32 16 11 N -0.52 -6.92 3.98 -228.07 -0.91 -7.83 16 12 C 0.05 0.78 5.05 -3.82 -0.02 0.76 16 13 C -0.12 -2.19 1.81 -90.62 -0.16 -2.35 16 14 H 0.06 1.17 5.94 -51.93 -0.31 0.86 16 15 C -0.14 -2.52 7.43 37.16 0.28 -2.25 16 16 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 17 C -0.52 -13.81 8.22 -34.44 -0.28 -14.10 16 18 H 0.05 1.40 7.16 -52.49 -0.38 1.02 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.95 7.74 -51.93 -0.40 0.55 16 29 H 0.05 0.74 7.01 -51.93 -0.36 0.38 16 30 H 0.08 0.99 6.25 -51.93 -0.32 0.67 16 31 H 0.07 1.03 7.79 -51.93 -0.40 0.62 16 32 H 0.40 3.84 8.84 -40.82 -0.36 3.48 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 1.14 7.58 -51.93 -0.39 0.74 16 36 H 0.06 0.72 5.54 -51.93 -0.29 0.43 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.16 5.74 -51.93 -0.30 0.86 16 39 H 0.03 0.50 4.78 -51.93 -0.25 0.25 16 40 H 0.07 1.40 6.68 -51.93 -0.35 1.05 16 41 H 0.05 0.78 7.74 -51.93 -0.40 0.38 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -30.26 328.87 -8.29 -38.55 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.25 Total: 2.35 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.56 Total: -10.66 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: -0.51 Total: -41.71 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.26 -8.29 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.690 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds