Wall clock time and date at job start Mon Mar 30 2020 00:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47056 * 2 1 4 4 C 1.52995 * 109.47492 * 175.23061 * 3 2 1 5 5 H 1.09002 * 109.39049 * 179.22878 * 4 3 2 6 6 C 1.50258 * 109.38411 * 298.91622 * 4 3 2 7 7 O 1.21286 * 118.62263 * 317.35611 * 6 4 3 8 8 N 1.33716 * 122.75262 * 137.35690 * 6 4 3 9 9 C 1.46005 * 122.92623 * 358.31120 * 8 6 4 10 10 C 1.52987 * 110.04069 * 18.16379 * 9 8 6 11 11 N 1.46900 * 109.38861 * 59.43294 * 4 3 2 12 12 C 1.46897 * 111.00066 * 66.17939 * 11 4 3 13 13 C 1.53005 * 109.46742 * 86.04041 * 12 11 4 14 14 H 1.08997 * 109.46981 * 53.32037 * 13 12 11 15 15 C 1.52998 * 109.47290 * 293.31414 * 13 12 11 16 16 C 1.53001 * 109.46981 * 173.31653 * 13 12 11 17 17 C 1.50696 * 109.47162 * 184.99874 * 16 13 12 18 18 H 1.07999 * 119.99885 * 0.02562 * 17 16 13 19 19 C 1.37878 * 120.00115 * 179.97438 * 17 16 13 20 20 N 1.31519 * 119.99736 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00134 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46960 * 60.00395 * 21 19 17 23 23 H 1.48506 * 109.46889 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47228 * 300.00355 * 21 19 17 25 25 H 1.09003 * 109.46853 * 299.99532 * 1 2 3 26 26 H 1.08993 * 109.47437 * 60.00008 * 1 2 3 27 27 H 1.09004 * 109.46738 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47316 * 240.00214 * 2 1 3 29 29 H 1.08993 * 109.47437 * 119.99992 * 2 1 3 30 30 H 1.09003 * 109.47060 * 295.23019 * 3 2 1 31 31 H 1.09000 * 109.46776 * 55.22331 * 3 2 1 32 32 H 0.97005 * 118.54015 * 178.31689 * 8 6 4 33 33 H 1.08998 * 109.38018 * 257.98807 * 9 8 6 34 34 H 1.09003 * 109.37518 * 138.33748 * 9 8 6 35 35 H 1.09000 * 109.59191 * 189.93296 * 10 9 8 36 36 H 1.08998 * 109.59475 * 69.48418 * 10 9 8 37 37 H 1.08992 * 109.47164 * 206.03872 * 12 11 4 38 38 H 1.09003 * 109.47218 * 326.04519 * 12 11 4 39 39 H 1.09001 * 109.47106 * 73.08724 * 15 13 12 40 40 H 1.08995 * 109.47606 * 193.08888 * 15 13 12 41 41 H 1.09005 * 109.47017 * 313.09300 * 15 13 12 42 42 H 1.08999 * 109.47428 * 305.00405 * 16 13 12 43 43 H 1.09006 * 109.47117 * 64.99676 * 16 13 12 44 44 H 0.96999 * 120.00049 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5652 1.4443 0.1199 5 1 3.9281 2.4720 0.1060 6 6 3.9644 0.7942 1.4144 7 8 3.3377 1.0633 2.4173 8 7 4.9817 -0.0687 1.5070 9 6 5.7755 -0.4864 0.3550 10 6 5.5858 0.5009 -0.7981 11 7 4.1442 0.7074 -1.0113 12 6 3.8943 1.4070 -2.2786 13 6 4.9914 2.4477 -2.5115 14 1 5.9678 1.9689 -2.4379 15 6 4.8823 3.5490 -1.4552 16 6 4.8270 3.0590 -3.9044 17 6 5.9765 3.9930 -4.1820 18 1 6.7475 4.1360 -3.4394 19 6 6.0446 4.6643 -5.3844 20 7 5.1059 4.4898 -6.2889 21 14 7.4699 5.8215 -5.7288 22 1 8.7468 5.0660 -5.6670 23 1 7.3102 6.4149 -7.0807 24 1 7.4854 6.9039 -4.7123 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7481 1.9311 -0.9297 31 1 1.6084 1.9804 0.8441 32 1 5.2022 -0.4334 2.3785 33 1 5.4569 -1.4791 0.0371 34 1 6.8287 -0.5186 0.6340 35 1 6.0349 0.0949 -1.7045 36 1 6.0581 1.4508 -0.5475 37 1 3.8962 0.6875 -3.0973 38 1 2.9253 1.9043 -2.2341 39 1 5.2255 3.1660 -0.4941 40 1 5.4999 4.3975 -1.7496 41 1 3.8436 3.8682 -1.3690 42 1 4.8157 2.2648 -4.6508 43 1 3.8894 3.6132 -3.9496 44 1 5.1535 4.9623 -7.1347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602479320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:01 Heat of formation + Delta-G solvation = -65.587015 kcal Electronic energy + Delta-G solvation = -21988.128027 eV Core-core repulsion = 18938.987464 eV Total energy + Delta-G solvation = -3049.140563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.86782 -39.23793 -36.74377 -36.27524 -34.77289 -33.30600 -31.12359 -29.43539 -28.82363 -27.29272 -25.43267 -24.22538 -23.49977 -22.25519 -20.72003 -19.46837 -18.61371 -18.24389 -17.87140 -16.80755 -16.51633 -16.06206 -15.91552 -15.68550 -15.33415 -15.05919 -14.60757 -14.32878 -13.98829 -13.83938 -13.58473 -13.42361 -13.11931 -12.94182 -12.79352 -12.72217 -12.46058 -12.29396 -12.23394 -12.17166 -11.96504 -11.65776 -11.50190 -11.31328 -11.25618 -11.06460 -10.79274 -10.50778 -10.03953 -9.18069 -8.15221 -6.24257 1.41102 1.42331 1.49999 1.57138 2.32111 2.42620 2.83123 3.18188 3.52462 3.85420 3.92680 4.01769 4.10799 4.20343 4.24193 4.33476 4.41781 4.48415 4.56349 4.69641 4.72801 4.80703 4.84216 4.86140 4.98284 4.98809 5.03931 5.11761 5.22024 5.29681 5.31528 5.39514 5.46274 5.52599 5.56243 5.73619 5.80619 5.90128 5.96915 6.07205 6.27204 6.31130 6.91989 7.20501 7.43981 8.95612 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024891 B = 0.004744 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.636974 B = 5901.051683 C = 6453.945290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C -0.099 4.099 4 C 0.048 3.952 5 H 0.087 0.913 6 C 0.530 3.470 7 O -0.592 6.592 8 N -0.710 5.710 9 C 0.118 3.882 10 C 0.021 3.979 11 N -0.511 5.511 12 C 0.063 3.937 13 C -0.107 4.107 14 H 0.071 0.929 15 C -0.136 4.136 16 C 0.036 3.964 17 C -0.528 4.528 18 H 0.059 0.941 19 C 0.001 3.999 20 N -0.933 5.933 21 Si 0.954 3.046 22 H -0.267 1.267 23 H -0.287 1.287 24 H -0.271 1.271 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.406 0.594 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.045 0.955 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.046 0.954 42 H -0.007 1.007 43 H -0.012 1.012 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -11.158 12.952 17.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.137 4.137 4 C -0.063 4.063 5 H 0.104 0.896 6 C 0.317 3.683 7 O -0.473 6.473 8 N -0.362 5.362 9 C -0.006 4.006 10 C -0.107 4.107 11 N -0.236 5.236 12 C -0.065 4.065 13 C -0.127 4.127 14 H 0.089 0.911 15 C -0.193 4.193 16 C -0.001 4.001 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.196 4.196 20 N -0.574 5.574 21 Si 0.780 3.220 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.196 1.196 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.242 0.758 33 H 0.104 0.896 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.011 0.989 43 H 0.006 0.994 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.402 -11.376 13.064 17.380 hybrid contribution 1.074 1.562 -0.328 1.924 sum -0.327 -9.814 12.736 16.082 Atomic orbital electron populations 1.21756 0.95283 1.01942 1.01655 1.21299 0.95928 0.95520 1.01515 1.21529 0.91115 0.98783 1.02312 1.22148 0.98042 0.97911 0.88241 0.89586 1.20203 0.79307 0.78583 0.90220 1.90704 1.54228 1.64175 1.38237 1.45557 1.32621 1.45067 1.12914 1.21721 0.96420 0.98364 0.84087 1.22729 0.88799 0.99096 1.00110 1.62886 1.13209 1.46393 1.01064 1.22337 0.98340 0.95016 0.90796 1.21722 0.99246 0.95867 0.95872 0.91120 1.21964 1.00927 0.99181 0.97181 1.18937 0.95057 0.94224 0.91919 1.21603 1.08892 1.25402 1.00721 0.92280 1.25869 0.98624 0.98756 0.96374 1.70081 1.35462 1.44183 1.07653 0.85664 0.79963 0.79260 0.77143 1.19179 1.21261 1.19623 0.93225 0.92393 0.92065 0.91019 0.94021 0.90621 0.91565 0.75785 0.89597 0.87291 0.87533 0.93639 0.90393 0.91012 0.92635 0.93481 0.93539 0.98854 0.99353 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.91 71.98 0.71 -2.42 16 2 C -0.10 -2.54 5.55 30.59 0.17 -2.37 16 3 C -0.10 -2.60 4.56 30.59 0.14 -2.46 16 4 C 0.05 1.28 1.91 44.03 0.08 1.36 16 5 H 0.09 2.49 4.11 -2.39 -0.01 2.48 16 6 C 0.53 14.48 6.12 87.68 0.54 15.01 16 7 O -0.59 -20.16 16.95 -3.05 -0.05 -20.21 16 8 N -0.71 -14.22 5.52 -466.08 -2.57 -16.79 16 9 C 0.12 1.80 7.39 86.47 0.64 2.44 16 10 C 0.02 0.44 4.07 86.24 0.35 0.79 16 11 N -0.51 -12.76 3.98 -875.48 -3.49 -16.24 16 12 C 0.06 1.88 5.05 86.31 0.44 2.32 16 13 C -0.11 -3.87 1.81 -10.79 -0.02 -3.89 16 14 H 0.07 2.47 5.94 -2.39 -0.01 2.46 16 15 C -0.14 -4.69 7.43 71.98 0.53 -4.15 16 16 C 0.04 1.78 4.45 29.85 0.13 1.91 16 17 C -0.53 -28.37 8.22 25.60 0.21 -28.16 16 18 H 0.06 3.05 7.16 -2.91 -0.02 3.03 16 19 C 0.00 0.07 5.46 84.65 0.46 0.54 16 20 N -0.93 -55.49 13.29 21.45 0.28 -55.20 16 21 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.75 7.74 -2.38 -0.02 1.74 16 29 H 0.04 1.11 7.01 -2.39 -0.02 1.09 16 30 H 0.08 1.96 6.25 -2.39 -0.01 1.95 16 31 H 0.07 1.83 7.79 -2.39 -0.02 1.82 16 32 H 0.41 6.80 8.84 -92.70 -0.82 5.98 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 2.15 7.58 -2.39 -0.02 2.13 16 36 H 0.05 1.07 5.54 -2.39 -0.01 1.06 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.07 2.21 5.74 -2.39 -0.01 2.19 16 39 H 0.06 1.66 4.78 -2.39 -0.01 1.65 16 40 H 0.05 1.84 6.68 -2.39 -0.02 1.82 16 41 H 0.05 1.57 7.74 -2.38 -0.02 1.56 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 44 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -65.55 328.87 0.76 -64.79 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.17 Total: 17.48 kcal Atomic # 6 Polarization: -23.48 SS G_CDS: 4.39 Total: -19.09 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -5.77 Total: -88.23 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.05 Total: -20.21 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -65.55 0.76 -64.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.795 kcal (2) G-P(sol) polarization free energy of solvation -65.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds