Wall clock time and date at job start Mon Mar 30 2020 00:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 C 1.53000 * 109.47496 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.30008 * 302.32280 * 4 3 2 6 6 C 1.50258 * 109.38813 * 182.58034 * 4 3 2 7 7 O 1.21275 * 118.61941 * 42.64243 * 6 4 3 8 8 N 1.33711 * 122.74855 * 222.64298 * 6 4 3 9 9 C 1.46005 * 122.93238 * 1.68742 * 8 6 4 10 10 C 1.52988 * 110.04017 * 341.84107 * 9 8 6 11 11 N 1.46901 * 109.38295 * 62.06318 * 4 3 2 12 12 C 1.46901 * 111.00317 * 47.08944 * 11 4 3 13 13 C 1.52998 * 109.47517 * 187.02861 * 12 11 4 14 14 H 1.09001 * 109.47002 * 305.00113 * 13 12 11 15 15 C 1.53005 * 109.46934 * 64.99624 * 13 12 11 16 16 C 1.52995 * 109.47458 * 184.99865 * 13 12 11 17 17 C 1.50698 * 109.47297 * 174.99739 * 16 13 12 18 18 H 1.08001 * 119.99728 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00004 * 179.97438 * 17 16 13 20 20 N 1.31513 * 119.99826 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46638 * 90.00590 * 21 19 17 23 23 H 1.48496 * 109.47206 * 210.00623 * 21 19 17 24 24 H 1.48500 * 109.47312 * 330.00723 * 21 19 17 25 25 H 1.08998 * 109.47259 * 299.99883 * 1 2 3 26 26 H 1.09003 * 109.47277 * 59.99955 * 1 2 3 27 27 H 1.08999 * 109.46617 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47259 * 240.00117 * 2 1 3 29 29 H 1.08998 * 109.47282 * 119.99555 * 2 1 3 30 30 H 1.08998 * 109.46956 * 59.99931 * 3 2 1 31 31 H 1.09003 * 109.47080 * 300.00166 * 3 2 1 32 32 H 0.97001 * 118.53275 * 181.71145 * 8 6 4 33 33 H 1.08996 * 109.38144 * 221.66270 * 9 8 6 34 34 H 1.09001 * 109.37412 * 102.01369 * 9 8 6 35 35 H 1.08994 * 109.59014 * 290.51570 * 10 9 8 36 36 H 1.09003 * 109.71603 * 170.14030 * 10 9 8 37 37 H 1.09000 * 109.46689 * 307.03002 * 12 11 4 38 38 H 1.09004 * 109.46998 * 67.02435 * 12 11 4 39 39 H 1.08998 * 109.47036 * 300.00451 * 15 13 12 40 40 H 1.09001 * 109.46876 * 60.00412 * 15 13 12 41 41 H 1.09000 * 109.47176 * 179.97438 * 15 13 12 42 42 H 1.08996 * 109.47142 * 295.00498 * 16 13 12 43 43 H 1.09001 * 109.46830 * 54.99737 * 16 13 12 44 44 H 0.97001 * 119.99738 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9300 0.8927 0.8702 6 6 4.0687 2.8586 0.0645 7 8 3.5225 3.6333 0.8209 8 7 5.0894 3.3001 -0.6779 9 6 5.7904 2.4592 -1.6440 10 6 5.5119 0.9832 -1.3536 11 7 4.0581 0.7933 -1.2233 12 6 3.3525 1.3026 -2.4068 13 6 3.7591 0.4847 -3.6343 14 1 4.8442 0.4975 -3.7363 15 6 3.2796 -0.9586 -3.4671 16 6 3.1220 1.0920 -4.8857 17 6 3.6195 0.3627 -6.1071 18 1 4.3197 -0.4527 -6.0012 19 6 3.1799 0.7358 -7.3595 20 7 2.3268 1.7284 -7.4883 21 14 3.7960 -0.1687 -8.8734 22 1 2.8935 -1.3104 -9.1692 23 1 3.8149 0.7604 -10.0316 24 1 5.1692 -0.6753 -8.6227 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 5.3773 4.2201 -0.5695 33 1 6.8621 2.6454 -1.5750 34 1 5.4471 2.7009 -2.6499 35 1 6.0030 0.6946 -0.4243 36 1 5.8888 0.3699 -2.1720 37 1 2.2768 1.2170 -2.2532 38 1 3.6150 2.3488 -2.5641 39 1 3.7335 -1.3912 -2.5755 40 1 2.1945 -0.9715 -3.3651 41 1 3.5689 -1.5412 -4.3417 42 1 2.0378 0.9988 -4.8232 43 1 3.3925 2.1455 -4.9563 44 1 2.0179 1.9911 -8.3694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602479321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:04 Heat of formation + Delta-G solvation = -49.785498 kcal Electronic energy + Delta-G solvation = -22057.822250 eV Core-core repulsion = 19009.366893 eV Total energy + Delta-G solvation = -3048.455357 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.93739 -37.74872 -35.67401 -34.95361 -33.09664 -31.97335 -30.08948 -27.82932 -26.75860 -26.26310 -24.02817 -23.16021 -22.21918 -20.88329 -19.52331 -18.30124 -17.30880 -16.69464 -16.28477 -15.70814 -15.49144 -14.92305 -14.44318 -14.27117 -14.12568 -13.61456 -13.28405 -13.09001 -12.81325 -12.41059 -12.32460 -12.00803 -11.72076 -11.51443 -11.44175 -11.22910 -10.97221 -10.91786 -10.81283 -10.74005 -10.51676 -10.34274 -10.24061 -10.06503 -9.62623 -9.19731 -9.11332 -8.99601 -8.35907 -8.10603 -6.00518 -4.02036 2.60304 3.16291 3.30676 3.37487 3.39690 3.97405 4.45347 4.47369 4.75197 4.89596 4.99666 5.11352 5.21960 5.30010 5.35532 5.39887 5.55837 5.65089 5.67907 5.77833 5.84647 5.93698 5.98903 6.00287 6.09714 6.19869 6.33564 6.39434 6.44197 6.56681 6.60429 6.67597 6.93309 6.98230 7.10414 7.19145 7.25078 7.29392 7.65330 7.80467 7.99207 8.16855 8.42445 9.04477 9.61733 11.10884 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.005285 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.926612 B = 5296.945583 C = 5948.118869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.108 4.108 4 C 0.072 3.928 5 H 0.111 0.889 6 C 0.491 3.509 7 O -0.557 6.557 8 N -0.721 5.721 9 C 0.068 3.932 10 C 0.036 3.964 11 N -0.513 5.513 12 C 0.041 3.959 13 C -0.078 4.078 14 H 0.056 0.944 15 C -0.124 4.124 16 C 0.028 3.972 17 C -0.512 4.512 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.274 1.274 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.396 0.604 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.040 0.960 41 H 0.054 0.946 42 H 0.016 0.984 43 H 0.011 0.989 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 -2.020 14.388 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.146 4.146 4 C -0.040 4.040 5 H 0.128 0.872 6 C 0.277 3.723 7 O -0.434 6.434 8 N -0.373 5.373 9 C -0.058 4.058 10 C -0.093 4.093 11 N -0.237 5.237 12 C -0.085 4.085 13 C -0.097 4.097 14 H 0.074 0.926 15 C -0.181 4.181 16 C -0.010 4.010 17 C -0.551 4.551 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.717 3.283 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.231 0.769 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.034 0.966 43 H 0.029 0.971 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.836 -2.270 14.659 15.322 hybrid contribution 0.735 0.962 -1.107 1.641 sum 4.571 -1.308 13.552 14.362 Atomic orbital electron populations 1.21778 0.96190 1.01444 1.01611 1.21465 0.95202 0.95717 1.03120 1.21666 0.91093 0.98444 1.03381 1.21962 0.97670 0.88488 0.95840 0.87152 1.21380 0.79297 0.92191 0.79444 1.90707 1.56452 1.56859 1.39397 1.45626 1.34577 1.15771 1.41302 1.22172 0.97289 0.92930 0.93394 1.22578 0.89647 0.93389 1.03666 1.62711 1.03282 1.55596 1.02079 1.22671 0.99288 0.97107 0.89456 1.21211 0.99751 0.95115 0.93634 0.92600 1.21605 0.99942 0.96443 1.00122 1.19111 0.95961 0.95509 0.90387 1.21203 1.26123 1.16680 0.91065 0.92563 1.25018 0.95232 0.95168 0.99083 1.69965 1.32278 1.27993 1.23333 0.86646 0.79229 0.79602 0.82831 1.20707 1.21360 1.19921 0.93221 0.92637 0.92816 0.90014 0.92349 0.90615 0.90995 0.76877 0.90305 0.90186 0.90378 0.87641 0.89955 0.94719 0.93821 0.94083 0.92723 0.96601 0.97106 0.93081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.38 5.57 -26.73 -0.15 -1.53 16 3 C -0.11 -1.40 3.93 -26.73 -0.10 -1.50 16 4 C 0.07 0.92 2.44 -69.08 -0.17 0.76 16 5 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 6 C 0.49 7.13 6.82 -11.67 -0.08 7.05 16 7 O -0.56 -9.87 17.02 5.56 0.09 -9.78 16 8 N -0.72 -8.89 5.34 -61.07 -0.33 -9.21 16 9 C 0.07 0.74 6.43 -4.32 -0.03 0.71 16 10 C 0.04 0.40 5.61 -3.67 -0.02 0.38 16 11 N -0.51 -6.65 3.76 -228.06 -0.86 -7.51 16 12 C 0.04 0.66 2.93 -3.82 -0.01 0.65 16 13 C -0.08 -1.45 2.22 -90.62 -0.20 -1.65 16 14 H 0.06 1.02 6.39 -51.93 -0.33 0.69 16 15 C -0.12 -2.19 8.89 37.16 0.33 -1.86 16 16 C 0.03 0.68 4.45 -27.89 -0.12 0.55 16 17 C -0.51 -13.76 8.41 -34.44 -0.29 -14.05 16 18 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.16 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 1.07 7.09 -51.93 -0.37 0.70 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.00 7.74 -51.93 -0.40 0.60 16 31 H 0.07 1.04 6.03 -51.93 -0.31 0.73 16 32 H 0.40 4.46 8.84 -40.82 -0.36 4.10 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 1.03 6.79 -51.93 -0.35 0.68 16 35 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 36 H 0.11 1.19 6.60 -51.93 -0.34 0.84 16 37 H 0.08 1.37 5.20 -51.93 -0.27 1.10 16 38 H 0.03 0.59 5.73 -51.93 -0.30 0.29 16 39 H 0.04 0.67 7.75 -51.93 -0.40 0.27 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 1.05 6.95 -51.93 -0.36 0.69 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -30.63 335.16 -8.43 -39.06 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.53 Total: 2.30 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -0.57 Total: -10.36 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: -0.45 Total: -42.44 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.63 -8.43 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.721 kcal (2) G-P(sol) polarization free energy of solvation -30.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds