Wall clock time and date at job start Mon Mar 30 2020 00:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47126 * 2 1 4 4 C 1.53000 * 109.47496 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.30008 * 302.32280 * 4 3 2 6 6 C 1.50258 * 109.38813 * 182.58034 * 4 3 2 7 7 O 1.21275 * 118.61941 * 42.64243 * 6 4 3 8 8 N 1.33711 * 122.74855 * 222.64298 * 6 4 3 9 9 C 1.46005 * 122.93238 * 1.68742 * 8 6 4 10 10 C 1.52988 * 110.04017 * 341.84107 * 9 8 6 11 11 N 1.46901 * 109.38295 * 62.06318 * 4 3 2 12 12 C 1.46901 * 111.00317 * 47.08944 * 11 4 3 13 13 C 1.52998 * 109.47517 * 187.02861 * 12 11 4 14 14 H 1.09001 * 109.47002 * 305.00113 * 13 12 11 15 15 C 1.53005 * 109.46934 * 64.99624 * 13 12 11 16 16 C 1.52995 * 109.47458 * 184.99865 * 13 12 11 17 17 C 1.50698 * 109.47297 * 174.99739 * 16 13 12 18 18 H 1.08001 * 119.99728 * 0.02562 * 17 16 13 19 19 C 1.37877 * 120.00004 * 179.97438 * 17 16 13 20 20 N 1.31513 * 119.99826 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46638 * 90.00590 * 21 19 17 23 23 H 1.48496 * 109.47206 * 210.00623 * 21 19 17 24 24 H 1.48500 * 109.47312 * 330.00723 * 21 19 17 25 25 H 1.08998 * 109.47259 * 299.99883 * 1 2 3 26 26 H 1.09003 * 109.47277 * 59.99955 * 1 2 3 27 27 H 1.08999 * 109.46617 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47259 * 240.00117 * 2 1 3 29 29 H 1.08998 * 109.47282 * 119.99555 * 2 1 3 30 30 H 1.08998 * 109.46956 * 59.99931 * 3 2 1 31 31 H 1.09003 * 109.47080 * 300.00166 * 3 2 1 32 32 H 0.97001 * 118.53275 * 181.71145 * 8 6 4 33 33 H 1.08996 * 109.38144 * 221.66270 * 9 8 6 34 34 H 1.09001 * 109.37412 * 102.01369 * 9 8 6 35 35 H 1.08994 * 109.59014 * 290.51570 * 10 9 8 36 36 H 1.09003 * 109.71603 * 170.14030 * 10 9 8 37 37 H 1.09000 * 109.46689 * 307.03002 * 12 11 4 38 38 H 1.09004 * 109.46998 * 67.02435 * 12 11 4 39 39 H 1.08998 * 109.47036 * 300.00451 * 15 13 12 40 40 H 1.09001 * 109.46876 * 60.00412 * 15 13 12 41 41 H 1.09000 * 109.47176 * 179.97438 * 15 13 12 42 42 H 1.08996 * 109.47142 * 295.00498 * 16 13 12 43 43 H 1.09001 * 109.46830 * 54.99737 * 16 13 12 44 44 H 0.97001 * 119.99738 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9300 0.8927 0.8702 6 6 4.0687 2.8586 0.0645 7 8 3.5225 3.6333 0.8209 8 7 5.0894 3.3001 -0.6779 9 6 5.7904 2.4592 -1.6440 10 6 5.5119 0.9832 -1.3536 11 7 4.0581 0.7933 -1.2233 12 6 3.3525 1.3026 -2.4068 13 6 3.7591 0.4847 -3.6343 14 1 4.8442 0.4975 -3.7363 15 6 3.2796 -0.9586 -3.4671 16 6 3.1220 1.0920 -4.8857 17 6 3.6195 0.3627 -6.1071 18 1 4.3197 -0.4527 -6.0012 19 6 3.1799 0.7358 -7.3595 20 7 2.3268 1.7284 -7.4883 21 14 3.7960 -0.1687 -8.8734 22 1 2.8935 -1.3104 -9.1692 23 1 3.8149 0.7604 -10.0316 24 1 5.1692 -0.6753 -8.6227 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 5.3773 4.2201 -0.5695 33 1 6.8621 2.6454 -1.5750 34 1 5.4471 2.7009 -2.6499 35 1 6.0030 0.6946 -0.4243 36 1 5.8888 0.3699 -2.1720 37 1 2.2768 1.2170 -2.2532 38 1 3.6150 2.3488 -2.5641 39 1 3.7335 -1.3912 -2.5755 40 1 2.1945 -0.9715 -3.3651 41 1 3.5689 -1.5412 -4.3417 42 1 2.0378 0.9988 -4.8232 43 1 3.3925 2.1455 -4.9563 44 1 2.0179 1.9911 -8.3694 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602479321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:03 Heat of formation + Delta-G solvation = -70.236104 kcal Electronic energy + Delta-G solvation = -22058.709055 eV Core-core repulsion = 19009.366893 eV Total energy + Delta-G solvation = -3049.342162 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03877 -38.99325 -36.72655 -36.49124 -34.53816 -33.61369 -31.11029 -29.33160 -28.25732 -27.48673 -25.53811 -24.34957 -23.57786 -21.87565 -20.98057 -19.50729 -18.47676 -18.25272 -17.78497 -16.83517 -16.64781 -16.50195 -15.89738 -15.49929 -15.25673 -14.88850 -14.50937 -14.34414 -14.06955 -13.89648 -13.64880 -13.27507 -13.11107 -12.85163 -12.72700 -12.67859 -12.55966 -12.20411 -12.16646 -12.01272 -11.94423 -11.82522 -11.51029 -11.28290 -11.17838 -10.97435 -10.86199 -10.50387 -10.17110 -9.23422 -8.14627 -6.23357 1.42783 1.43247 1.47510 1.53820 2.14979 2.44102 2.89055 3.19636 3.45824 3.73121 3.94178 4.02531 4.10311 4.21698 4.28937 4.37137 4.48061 4.52797 4.57218 4.66037 4.75561 4.82798 4.91087 4.95839 5.01403 5.02594 5.08450 5.12638 5.28227 5.34436 5.44151 5.53445 5.55630 5.59725 5.62990 5.63960 5.84812 5.92779 5.96060 6.03591 6.21204 6.33406 6.93859 7.08187 7.45352 8.97437 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.005285 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.926612 B = 5296.945583 C = 5948.118869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.105 4.105 4 C 0.077 3.923 5 H 0.136 0.864 6 C 0.486 3.514 7 O -0.595 6.595 8 N -0.714 5.714 9 C 0.069 3.931 10 C 0.032 3.968 11 N -0.505 5.505 12 C 0.058 3.942 13 C -0.066 4.066 14 H 0.066 0.934 15 C -0.114 4.114 16 C 0.033 3.967 17 C -0.521 4.521 18 H 0.066 0.934 19 C -0.004 4.004 20 N -0.938 5.938 21 Si 0.958 3.042 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.259 1.259 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.401 0.599 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.019 0.981 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.038 0.962 42 H -0.016 1.016 43 H -0.019 1.019 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 -3.825 15.294 16.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.143 4.143 4 C -0.035 4.035 5 H 0.153 0.847 6 C 0.272 3.728 7 O -0.476 6.476 8 N -0.365 5.365 9 C -0.056 4.056 10 C -0.096 4.096 11 N -0.228 5.228 12 C -0.070 4.070 13 C -0.084 4.084 14 H 0.084 0.916 15 C -0.171 4.171 16 C -0.004 4.004 17 C -0.559 4.559 18 H 0.084 0.916 19 C -0.201 4.201 20 N -0.579 5.579 21 Si 0.783 3.217 22 H -0.201 1.201 23 H -0.214 1.214 24 H -0.183 1.183 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.237 0.763 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.090 0.910 38 H 0.037 0.963 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.002 0.998 43 H -0.001 1.001 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.721 -4.092 15.559 17.075 hybrid contribution 0.168 1.570 -1.378 2.096 sum 5.889 -2.522 14.181 15.561 Atomic orbital electron populations 1.21780 0.95935 1.02039 1.01280 1.21404 0.95439 0.94594 1.03321 1.21614 0.91489 0.99126 1.02041 1.22022 0.97386 0.87773 0.96269 0.84691 1.21722 0.79277 0.92660 0.79131 1.90690 1.57749 1.57885 1.41273 1.45658 1.33911 1.16317 1.40650 1.22252 0.98953 0.92716 0.91708 1.22758 0.88139 0.93380 1.05345 1.62668 1.04439 1.54919 1.00787 1.22308 0.99057 0.95756 0.89870 1.20981 0.99679 0.95716 0.92050 0.91610 1.21508 0.99603 0.95315 1.00702 1.19001 0.94304 0.94091 0.93036 1.21635 1.25746 1.16635 0.91927 0.91635 1.25944 0.95466 0.96006 1.02637 1.70115 1.33914 1.29861 1.24035 0.85546 0.79290 0.78222 0.78602 1.20132 1.21399 1.18341 0.92385 0.94182 0.91738 0.91224 0.90483 0.90959 0.93345 0.76349 0.86894 0.92457 0.87567 0.87240 0.91018 0.96284 0.90808 0.94900 0.94334 0.99762 1.00061 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.11 -2.42 5.57 30.60 0.17 -2.25 16 3 C -0.10 -2.65 3.93 30.60 0.12 -2.53 16 4 C 0.08 1.83 2.44 44.03 0.11 1.94 16 5 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 6 C 0.49 13.61 6.82 87.68 0.60 14.21 16 7 O -0.60 -21.00 17.02 -3.02 -0.05 -21.05 16 8 N -0.71 -16.68 5.34 -466.10 -2.49 -19.17 16 9 C 0.07 1.36 6.43 86.47 0.56 1.91 16 10 C 0.03 0.60 5.61 86.24 0.48 1.09 16 11 N -0.50 -12.06 3.76 -875.44 -3.30 -15.36 16 12 C 0.06 1.83 2.93 86.30 0.25 2.08 16 13 C -0.07 -2.41 2.22 -10.79 -0.02 -2.44 16 14 H 0.07 2.30 6.39 -2.39 -0.02 2.29 16 15 C -0.11 -3.90 8.89 71.98 0.64 -3.26 16 16 C 0.03 1.68 4.45 29.85 0.13 1.81 16 17 C -0.52 -28.22 8.41 25.60 0.22 -28.00 16 18 H 0.07 3.36 7.06 -2.91 -0.02 3.34 16 19 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 20 N -0.94 -56.86 13.29 21.45 0.28 -56.57 16 21 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 1.72 7.09 -2.39 -0.02 1.70 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 1.89 7.74 -2.39 -0.02 1.87 16 31 H 0.05 1.45 6.03 -2.39 -0.01 1.43 16 32 H 0.40 8.62 8.84 -92.71 -0.82 7.80 16 33 H 0.11 1.51 8.14 -2.39 -0.02 1.50 16 34 H 0.06 1.43 6.79 -2.39 -0.02 1.42 16 35 H 0.11 1.53 8.08 -2.39 -0.02 1.51 16 36 H 0.11 2.07 6.60 -2.39 -0.02 2.06 16 37 H 0.07 2.45 5.20 -2.39 -0.01 2.44 16 38 H 0.02 0.66 5.73 -2.38 -0.01 0.65 16 39 H 0.07 2.08 7.75 -2.39 -0.02 2.06 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.04 1.43 6.95 -2.39 -0.02 1.41 16 42 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 43 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 44 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -67.55 335.16 1.06 -66.49 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.16 Total: 17.93 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 4.43 Total: -17.72 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -5.50 Total: -91.10 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.05 Total: -21.05 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -67.55 1.06 -66.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.748 kcal (2) G-P(sol) polarization free energy of solvation -67.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds