Wall clock time and date at job start Mon Mar 30 2020 00:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53004 * 109.46884 * 2 1 4 4 C 1.52994 * 109.46894 * 184.92893 * 3 2 1 5 5 H 1.09003 * 109.29978 * 178.25161 * 4 3 2 6 6 C 1.50256 * 109.38814 * 297.98985 * 4 3 2 7 7 O 1.21279 * 118.62538 * 317.35853 * 6 4 3 8 8 N 1.33715 * 122.74992 * 137.07498 * 6 4 3 9 9 C 1.46006 * 122.93023 * 358.59871 * 8 6 4 10 10 C 1.52982 * 110.04019 * 18.15630 * 9 8 6 11 11 N 1.46729 * 109.50257 * 58.69437 * 4 3 2 12 12 C 1.46901 * 111.04654 * 66.28294 * 11 4 3 13 13 C 1.53006 * 109.46890 * 189.12666 * 12 11 4 14 14 H 1.09000 * 109.47233 * 302.25019 * 13 12 11 15 15 C 1.53002 * 109.47241 * 62.25204 * 13 12 11 16 16 C 1.53005 * 109.47001 * 182.25301 * 13 12 11 17 17 C 1.50698 * 109.46740 * 174.99717 * 16 13 12 18 18 H 1.07998 * 120.00558 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99736 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00231 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99939 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47594 * 89.99525 * 21 19 17 23 23 H 1.48505 * 109.47272 * 209.99468 * 21 19 17 24 24 H 1.48501 * 109.47332 * 329.99434 * 21 19 17 25 25 H 1.08997 * 109.47199 * 300.00222 * 1 2 3 26 26 H 1.09004 * 109.46720 * 60.00240 * 1 2 3 27 27 H 1.09001 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47199 * 239.99778 * 2 1 3 29 29 H 1.09004 * 109.46720 * 119.99760 * 2 1 3 30 30 H 1.09005 * 109.46821 * 64.93329 * 3 2 1 31 31 H 1.08996 * 109.46806 * 304.93146 * 3 2 1 32 32 H 0.97001 * 118.53966 * 178.57266 * 8 6 4 33 33 H 1.09003 * 109.37985 * 138.33247 * 9 8 6 34 34 H 1.08998 * 109.38087 * 257.98487 * 9 8 6 35 35 H 1.09001 * 109.59585 * 69.48365 * 10 9 8 36 36 H 1.09000 * 109.59633 * 189.78566 * 10 9 8 37 37 H 1.09000 * 109.47546 * 309.12469 * 12 11 4 38 38 H 1.09002 * 109.47388 * 69.13136 * 12 11 4 39 39 H 1.09000 * 109.46749 * 305.01771 * 15 13 12 40 40 H 1.08996 * 109.47042 * 65.01418 * 15 13 12 41 41 H 1.09000 * 109.46832 * 185.01756 * 15 13 12 42 42 H 1.08997 * 109.46564 * 294.99850 * 16 13 12 43 43 H 1.09004 * 109.47170 * 54.99922 * 16 13 12 44 44 H 0.97001 * 120.00114 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5650 1.4443 -0.1239 5 1 3.9227 2.4735 -0.1549 6 6 4.1627 0.7442 1.0635 7 8 3.7042 0.9709 2.1632 8 7 5.1754 -0.1226 0.9580 9 6 5.7743 -0.4915 -0.3215 10 6 5.4123 0.5440 -1.3878 11 7 3.9566 0.7604 -1.3616 12 6 3.5149 1.5134 -2.5430 13 6 3.7358 0.6677 -3.7988 14 1 4.7888 0.3961 -3.8733 15 6 2.8863 -0.6020 -3.7145 16 6 3.3282 1.4731 -5.0342 17 6 3.6599 0.6883 -6.2772 18 1 4.1155 -0.2875 -6.1944 19 6 3.3809 1.2155 -7.5203 20 7 3.6699 0.5304 -8.6052 21 14 2.5923 2.9028 -7.6636 22 1 3.6524 3.9402 -7.7361 23 1 1.7610 2.9580 -8.8929 24 1 1.7365 3.1518 -6.4758 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.7506 1.9302 0.9309 31 1 1.6063 1.9812 -0.8425 32 1 5.5283 -0.5239 1.7675 33 1 6.8581 -0.5363 -0.2141 34 1 5.4022 -1.4696 -0.6263 35 1 5.9251 1.4821 -1.1754 36 1 5.7120 0.1778 -2.3697 37 1 2.4556 1.7515 -2.4470 38 1 4.0892 2.4366 -2.6211 39 1 3.1138 -1.1305 -2.7888 40 1 1.8299 -0.3340 -3.7298 41 1 3.1102 -1.2460 -4.5650 42 1 2.2564 1.6685 -5.0030 43 1 3.8699 2.4189 -5.0464 44 1 3.4739 0.9015 -9.4797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602479322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:07 Heat of formation + Delta-G solvation = -50.911674 kcal Electronic energy + Delta-G solvation = -21889.132105 eV Core-core repulsion = 18840.627913 eV Total energy + Delta-G solvation = -3048.504192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.69981 -37.82571 -35.77070 -35.10198 -33.29824 -31.99524 -30.13006 -28.38195 -27.23019 -25.95074 -23.88034 -23.26373 -21.78088 -21.25819 -19.09631 -18.72211 -17.42931 -16.95901 -16.67226 -15.61912 -15.15175 -14.83074 -14.70423 -14.40150 -14.02863 -13.90237 -13.41722 -13.06846 -12.99665 -12.62144 -12.37976 -12.20190 -11.90037 -11.75754 -11.61896 -11.33542 -11.08115 -11.00993 -10.83193 -10.70318 -10.44294 -10.35512 -9.99684 -9.88364 -9.62449 -9.41539 -9.19812 -9.08557 -8.54012 -8.33161 -6.04524 -4.01680 2.55137 3.16025 3.28991 3.37387 3.40213 3.75752 4.41430 4.44435 4.69075 4.82535 4.95454 5.07621 5.13002 5.25225 5.29148 5.40881 5.43688 5.61480 5.65000 5.73493 5.74918 5.80441 5.87882 5.96633 6.02386 6.16363 6.22964 6.30132 6.37379 6.48885 6.58810 6.61191 6.78719 6.93252 6.98930 7.09941 7.12864 7.17654 7.26912 7.44630 7.79737 8.12529 8.54167 9.01041 9.58471 11.08842 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023730 B = 0.004929 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.668956 B = 5679.254327 C = 6171.887712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.099 4.099 4 C 0.067 3.933 5 H 0.070 0.930 6 C 0.533 3.467 7 O -0.555 6.555 8 N -0.720 5.720 9 C 0.116 3.884 10 C 0.028 3.972 11 N -0.520 5.520 12 C 0.053 3.947 13 C -0.070 4.070 14 H 0.062 0.938 15 C -0.124 4.124 16 C -0.010 4.010 17 C -0.512 4.512 18 H 0.074 0.926 19 C 0.066 3.934 20 N -0.905 5.905 21 Si 0.877 3.123 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.266 1.266 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.397 0.603 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.046 0.954 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.016 0.984 43 H 0.007 0.993 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 -0.382 17.420 17.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.137 4.137 4 C -0.044 4.044 5 H 0.088 0.912 6 C 0.320 3.680 7 O -0.433 6.433 8 N -0.371 5.371 9 C -0.009 4.009 10 C -0.100 4.100 11 N -0.246 5.246 12 C -0.074 4.074 13 C -0.089 4.089 14 H 0.080 0.920 15 C -0.181 4.181 16 C -0.047 4.047 17 C -0.550 4.550 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.544 5.544 21 Si 0.704 3.296 22 H -0.205 1.205 23 H -0.215 1.215 24 H -0.191 1.191 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.232 0.768 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.026 0.974 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.824 -0.617 17.587 17.617 hybrid contribution 0.302 1.560 -0.083 1.591 sum 1.126 0.943 17.504 17.566 Atomic orbital electron populations 1.21755 0.96278 1.01345 1.01361 1.21461 0.95195 0.96173 1.02841 1.21531 0.90925 0.98713 1.02551 1.21724 0.97940 0.96422 0.88321 0.91243 1.20080 0.78836 0.78686 0.90422 1.90727 1.60699 1.64265 1.27606 1.45577 1.35770 1.45471 1.10329 1.21531 0.97549 0.99194 0.82614 1.22578 0.88774 0.98008 1.00642 1.62422 1.12465 1.48352 1.01311 1.22479 1.00674 0.94823 0.89429 1.21039 0.99775 0.95754 0.92340 0.92005 1.21595 0.98792 0.97300 1.00428 1.19626 0.96258 0.95298 0.93558 1.21100 1.40413 1.04657 0.88844 0.90833 1.25020 0.95315 0.97257 0.95916 1.69911 1.48615 1.38079 0.97784 0.86829 0.79917 0.85157 0.77649 1.20473 1.21482 1.19061 0.93323 0.92715 0.93006 0.89917 0.92839 0.90792 0.90765 0.76790 0.90403 0.90601 0.94097 0.87413 0.90357 0.94976 0.93477 0.94055 0.92479 0.96568 0.97430 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.49 5.52 -26.72 -0.15 -1.64 16 3 C -0.10 -1.22 4.52 -26.73 -0.12 -1.34 16 4 C 0.07 0.84 2.18 -69.18 -0.15 0.69 16 5 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 6 C 0.53 7.02 6.32 -11.67 -0.07 6.94 16 7 O -0.56 -9.00 16.94 5.56 0.09 -8.90 16 8 N -0.72 -7.44 5.52 -61.07 -0.34 -7.78 16 9 C 0.12 1.01 7.39 -4.32 -0.03 0.98 16 10 C 0.03 0.31 5.46 -3.68 -0.02 0.29 16 11 N -0.52 -6.49 2.80 -228.20 -0.64 -7.13 16 12 C 0.05 0.77 4.22 -3.82 -0.02 0.75 16 13 C -0.07 -1.25 2.24 -90.61 -0.20 -1.45 16 14 H 0.06 1.10 6.24 -51.93 -0.32 0.78 16 15 C -0.12 -2.16 8.85 37.16 0.33 -1.83 16 16 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 17 C -0.51 -13.88 9.02 -34.44 -0.31 -14.19 16 18 H 0.07 2.14 7.30 -52.49 -0.38 1.76 16 19 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16 20 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 21 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.12 7.19 -51.93 -0.37 0.74 16 29 H 0.05 0.72 7.38 -51.93 -0.38 0.34 16 30 H 0.07 0.94 7.76 -51.93 -0.40 0.53 16 31 H 0.07 0.89 6.45 -51.93 -0.33 0.55 16 32 H 0.40 3.52 8.84 -40.82 -0.36 3.16 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.43 8.08 -51.93 -0.42 0.02 16 36 H 0.11 1.22 6.01 -51.93 -0.31 0.91 16 37 H 0.08 1.15 6.15 -51.93 -0.32 0.83 16 38 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 39 H 0.05 0.72 7.30 -51.93 -0.38 0.34 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.12 7.10 -51.93 -0.37 0.75 16 42 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 43 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -30.99 336.05 -7.96 -38.96 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.67 Total: 0.39 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.57 Total: -10.66 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: -0.20 Total: -41.48 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.99 -7.96 -38.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.956 kcal (2) G-P(sol) polarization free energy of solvation -30.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds