Wall clock time and date at job start Mon Mar 30 2020 00:42:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 C 1.53004 * 109.46884 * 2 1
4 4 C 1.52994 * 109.46894 * 184.92893 * 3 2 1
5 5 H 1.09003 * 109.29978 * 178.25161 * 4 3 2
6 6 C 1.50256 * 109.38814 * 297.98985 * 4 3 2
7 7 O 1.21279 * 118.62538 * 317.35853 * 6 4 3
8 8 N 1.33715 * 122.74992 * 137.07498 * 6 4 3
9 9 C 1.46006 * 122.93023 * 358.59871 * 8 6 4
10 10 C 1.52982 * 110.04019 * 18.15630 * 9 8 6
11 11 N 1.46729 * 109.50257 * 58.69437 * 4 3 2
12 12 C 1.46901 * 111.04654 * 66.28294 * 11 4 3
13 13 C 1.53006 * 109.46890 * 189.12666 * 12 11 4
14 14 H 1.09000 * 109.47233 * 302.25019 * 13 12 11
15 15 C 1.53002 * 109.47241 * 62.25204 * 13 12 11
16 16 C 1.53005 * 109.47001 * 182.25301 * 13 12 11
17 17 C 1.50698 * 109.46740 * 174.99717 * 16 13 12
18 18 H 1.07998 * 120.00558 * 0.02562 * 17 16 13
19 19 C 1.37878 * 119.99736 * 179.97438 * 17 16 13
20 20 N 1.31517 * 120.00231 * 180.02562 * 19 17 16
21 21 Si 1.86800 * 119.99939 * 0.02562 * 19 17 16
22 22 H 1.48495 * 109.47594 * 89.99525 * 21 19 17
23 23 H 1.48505 * 109.47272 * 209.99468 * 21 19 17
24 24 H 1.48501 * 109.47332 * 329.99434 * 21 19 17
25 25 H 1.08997 * 109.47199 * 300.00222 * 1 2 3
26 26 H 1.09004 * 109.46720 * 60.00240 * 1 2 3
27 27 H 1.09001 * 109.46987 * 179.97438 * 1 2 3
28 28 H 1.08997 * 109.47199 * 239.99778 * 2 1 3
29 29 H 1.09004 * 109.46720 * 119.99760 * 2 1 3
30 30 H 1.09005 * 109.46821 * 64.93329 * 3 2 1
31 31 H 1.08996 * 109.46806 * 304.93146 * 3 2 1
32 32 H 0.97001 * 118.53966 * 178.57266 * 8 6 4
33 33 H 1.09003 * 109.37985 * 138.33247 * 9 8 6
34 34 H 1.08998 * 109.38087 * 257.98487 * 9 8 6
35 35 H 1.09001 * 109.59585 * 69.48365 * 10 9 8
36 36 H 1.09000 * 109.59633 * 189.78566 * 10 9 8
37 37 H 1.09000 * 109.47546 * 309.12469 * 12 11 4
38 38 H 1.09002 * 109.47388 * 69.13136 * 12 11 4
39 39 H 1.09000 * 109.46749 * 305.01771 * 15 13 12
40 40 H 1.08996 * 109.47042 * 65.01418 * 15 13 12
41 41 H 1.09000 * 109.46832 * 185.01756 * 15 13 12
42 42 H 1.08997 * 109.46564 * 294.99850 * 16 13 12
43 43 H 1.09004 * 109.47170 * 54.99922 * 16 13 12
44 44 H 0.97001 * 120.00114 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4426 0.0000
4 6 3.5650 1.4443 -0.1239
5 1 3.9227 2.4735 -0.1549
6 6 4.1627 0.7442 1.0635
7 8 3.7042 0.9709 2.1632
8 7 5.1754 -0.1226 0.9580
9 6 5.7743 -0.4915 -0.3215
10 6 5.4123 0.5440 -1.3878
11 7 3.9566 0.7604 -1.3616
12 6 3.5149 1.5134 -2.5430
13 6 3.7358 0.6677 -3.7988
14 1 4.7888 0.3961 -3.8733
15 6 2.8863 -0.6020 -3.7145
16 6 3.3282 1.4731 -5.0342
17 6 3.6599 0.6883 -6.2772
18 1 4.1155 -0.2875 -6.1944
19 6 3.3809 1.2155 -7.5203
20 7 3.6699 0.5304 -8.6052
21 14 2.5923 2.9028 -7.6636
22 1 3.6524 3.9402 -7.7361
23 1 1.7610 2.9580 -8.8929
24 1 1.7365 3.1518 -6.4758
25 1 -0.3633 0.5138 0.8899
26 1 -0.3633 0.5138 -0.8901
27 1 -0.3633 -1.0277 -0.0005
28 1 1.8934 -0.5138 -0.8899
29 1 1.8934 -0.5138 0.8901
30 1 1.7506 1.9302 0.9309
31 1 1.6063 1.9812 -0.8425
32 1 5.5283 -0.5239 1.7675
33 1 6.8581 -0.5363 -0.2141
34 1 5.4022 -1.4696 -0.6263
35 1 5.9251 1.4821 -1.1754
36 1 5.7120 0.1778 -2.3697
37 1 2.4556 1.7515 -2.4470
38 1 4.0892 2.4366 -2.6211
39 1 3.1138 -1.1305 -2.7888
40 1 1.8299 -0.3340 -3.7298
41 1 3.1102 -1.2460 -4.5650
42 1 2.2564 1.6685 -5.0030
43 1 3.8699 2.4189 -5.0464
44 1 3.4739 0.9015 -9.4797
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000602479322.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:42:07
Heat of formation + Delta-G solvation = -50.911674 kcal
Electronic energy + Delta-G solvation = -21889.132105 eV
Core-core repulsion = 18840.627913 eV
Total energy + Delta-G solvation = -3048.504192 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-40.69981 -37.82571 -35.77070 -35.10198 -33.29824 -31.99524 -30.13006 -28.38195
-27.23019 -25.95074 -23.88034 -23.26373 -21.78088 -21.25819 -19.09631 -18.72211
-17.42931 -16.95901 -16.67226 -15.61912 -15.15175 -14.83074 -14.70423 -14.40150
-14.02863 -13.90237 -13.41722 -13.06846 -12.99665 -12.62144 -12.37976 -12.20190
-11.90037 -11.75754 -11.61896 -11.33542 -11.08115 -11.00993 -10.83193 -10.70318
-10.44294 -10.35512 -9.99684 -9.88364 -9.62449 -9.41539 -9.19812 -9.08557
-8.54012 -8.33161 -6.04524 -4.01680 2.55137 3.16025 3.28991 3.37387
3.40213 3.75752 4.41430 4.44435 4.69075 4.82535 4.95454 5.07621
5.13002 5.25225 5.29148 5.40881 5.43688 5.61480 5.65000 5.73493
5.74918 5.80441 5.87882 5.96633 6.02386 6.16363 6.22964 6.30132
6.37379 6.48885 6.58810 6.61191 6.78719 6.93252 6.98930 7.09941
7.12864 7.17654 7.26912 7.44630 7.79737 8.12529 8.54167 9.01041
9.58471 11.08842
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.023730 B = 0.004929 C = 0.004536
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1179.668956 B = 5679.254327 C = 6171.887712
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.119 4.119
3 C -0.099 4.099
4 C 0.067 3.933
5 H 0.070 0.930
6 C 0.533 3.467
7 O -0.555 6.555
8 N -0.720 5.720
9 C 0.116 3.884
10 C 0.028 3.972
11 N -0.520 5.520
12 C 0.053 3.947
13 C -0.070 4.070
14 H 0.062 0.938
15 C -0.124 4.124
16 C -0.010 4.010
17 C -0.512 4.512
18 H 0.074 0.926
19 C 0.066 3.934
20 N -0.905 5.905
21 Si 0.877 3.123
22 H -0.279 1.279
23 H -0.289 1.289
24 H -0.266 1.266
25 H 0.048 0.952
26 H 0.054 0.946
27 H 0.051 0.949
28 H 0.082 0.918
29 H 0.053 0.947
30 H 0.073 0.927
31 H 0.074 0.926
32 H 0.397 0.603
33 H 0.078 0.922
34 H 0.076 0.924
35 H 0.041 0.959
36 H 0.108 0.892
37 H 0.078 0.922
38 H 0.032 0.968
39 H 0.046 0.954
40 H 0.040 0.960
41 H 0.056 0.944
42 H 0.016 0.984
43 H 0.007 0.993
44 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.400 -0.382 17.420 17.480
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.157 4.157
3 C -0.137 4.137
4 C -0.044 4.044
5 H 0.088 0.912
6 C 0.320 3.680
7 O -0.433 6.433
8 N -0.371 5.371
9 C -0.009 4.009
10 C -0.100 4.100
11 N -0.246 5.246
12 C -0.074 4.074
13 C -0.089 4.089
14 H 0.080 0.920
15 C -0.181 4.181
16 C -0.047 4.047
17 C -0.550 4.550
18 H 0.092 0.908
19 C -0.135 4.135
20 N -0.544 5.544
21 Si 0.704 3.296
22 H -0.205 1.205
23 H -0.215 1.215
24 H -0.191 1.191
25 H 0.067 0.933
26 H 0.073 0.927
27 H 0.070 0.930
28 H 0.101 0.899
29 H 0.072 0.928
30 H 0.092 0.908
31 H 0.092 0.908
32 H 0.232 0.768
33 H 0.096 0.904
34 H 0.094 0.906
35 H 0.059 0.941
36 H 0.126 0.874
37 H 0.096 0.904
38 H 0.050 0.950
39 H 0.065 0.935
40 H 0.059 0.941
41 H 0.075 0.925
42 H 0.034 0.966
43 H 0.026 0.974
44 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 0.824 -0.617 17.587 17.617
hybrid contribution 0.302 1.560 -0.083 1.591
sum 1.126 0.943 17.504 17.566
Atomic orbital electron populations
1.21755 0.96278 1.01345 1.01361 1.21461 0.95195 0.96173 1.02841
1.21531 0.90925 0.98713 1.02551 1.21724 0.97940 0.96422 0.88321
0.91243 1.20080 0.78836 0.78686 0.90422 1.90727 1.60699 1.64265
1.27606 1.45577 1.35770 1.45471 1.10329 1.21531 0.97549 0.99194
0.82614 1.22578 0.88774 0.98008 1.00642 1.62422 1.12465 1.48352
1.01311 1.22479 1.00674 0.94823 0.89429 1.21039 0.99775 0.95754
0.92340 0.92005 1.21595 0.98792 0.97300 1.00428 1.19626 0.96258
0.95298 0.93558 1.21100 1.40413 1.04657 0.88844 0.90833 1.25020
0.95315 0.97257 0.95916 1.69911 1.48615 1.38079 0.97784 0.86829
0.79917 0.85157 0.77649 1.20473 1.21482 1.19061 0.93323 0.92715
0.93006 0.89917 0.92839 0.90792 0.90765 0.76790 0.90403 0.90601
0.94097 0.87413 0.90357 0.94976 0.93477 0.94055 0.92479 0.96568
0.97430 0.92820
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16
2 C -0.12 -1.49 5.52 -26.72 -0.15 -1.64 16
3 C -0.10 -1.22 4.52 -26.73 -0.12 -1.34 16
4 C 0.07 0.84 2.18 -69.18 -0.15 0.69 16
5 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16
6 C 0.53 7.02 6.32 -11.67 -0.07 6.94 16
7 O -0.56 -9.00 16.94 5.56 0.09 -8.90 16
8 N -0.72 -7.44 5.52 -61.07 -0.34 -7.78 16
9 C 0.12 1.01 7.39 -4.32 -0.03 0.98 16
10 C 0.03 0.31 5.46 -3.68 -0.02 0.29 16
11 N -0.52 -6.49 2.80 -228.20 -0.64 -7.13 16
12 C 0.05 0.77 4.22 -3.82 -0.02 0.75 16
13 C -0.07 -1.25 2.24 -90.61 -0.20 -1.45 16
14 H 0.06 1.10 6.24 -51.93 -0.32 0.78 16
15 C -0.12 -2.16 8.85 37.16 0.33 -1.83 16
16 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16
17 C -0.51 -13.88 9.02 -34.44 -0.31 -14.19 16
18 H 0.07 2.14 7.30 -52.49 -0.38 1.76 16
19 C 0.07 1.86 5.47 -17.82 -0.10 1.77 16
20 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16
21 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16
22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16
24 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16
25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
28 H 0.08 1.12 7.19 -51.93 -0.37 0.74 16
29 H 0.05 0.72 7.38 -51.93 -0.38 0.34 16
30 H 0.07 0.94 7.76 -51.93 -0.40 0.53 16
31 H 0.07 0.89 6.45 -51.93 -0.33 0.55 16
32 H 0.40 3.52 8.84 -40.82 -0.36 3.16 16
33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
35 H 0.04 0.43 8.08 -51.93 -0.42 0.02 16
36 H 0.11 1.22 6.01 -51.93 -0.31 0.91 16
37 H 0.08 1.15 6.15 -51.93 -0.32 0.83 16
38 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16
39 H 0.05 0.72 7.30 -51.93 -0.38 0.34 16
40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
41 H 0.06 1.12 7.10 -51.93 -0.37 0.75 16
42 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16
43 H 0.01 0.17 7.57 -51.93 -0.39 -0.23 16
44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
LS Contribution 336.05 15.07 5.06 5.06
Total: -1.00 -30.99 336.05 -7.96 -38.96
By element:
Atomic # 1 Polarization: 8.07 SS G_CDS: -7.67 Total: 0.39 kcal
Atomic # 6 Polarization: -10.09 SS G_CDS: -0.57 Total: -10.66 kcal
Atomic # 7 Polarization: -41.28 SS G_CDS: -0.20 Total: -41.48 kcal
Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.90 kcal
Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -30.99 -7.96 -38.96 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000602479322.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.956 kcal
(2) G-P(sol) polarization free energy of solvation -30.993 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.950 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.955 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.912 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds