Wall clock time and date at job start Mon Mar 30 2020 00:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53004 * 109.46884 * 2 1 4 4 C 1.52994 * 109.46894 * 184.92893 * 3 2 1 5 5 H 1.09003 * 109.29978 * 178.25161 * 4 3 2 6 6 C 1.50256 * 109.38814 * 297.98985 * 4 3 2 7 7 O 1.21279 * 118.62538 * 317.35853 * 6 4 3 8 8 N 1.33715 * 122.74992 * 137.07498 * 6 4 3 9 9 C 1.46006 * 122.93023 * 358.59871 * 8 6 4 10 10 C 1.52982 * 110.04019 * 18.15630 * 9 8 6 11 11 N 1.46729 * 109.50257 * 58.69437 * 4 3 2 12 12 C 1.46901 * 111.04654 * 66.28294 * 11 4 3 13 13 C 1.53006 * 109.46890 * 189.12666 * 12 11 4 14 14 H 1.09000 * 109.47233 * 302.25019 * 13 12 11 15 15 C 1.53002 * 109.47241 * 62.25204 * 13 12 11 16 16 C 1.53005 * 109.47001 * 182.25301 * 13 12 11 17 17 C 1.50698 * 109.46740 * 174.99717 * 16 13 12 18 18 H 1.07998 * 120.00558 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99736 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00231 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99939 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47594 * 89.99525 * 21 19 17 23 23 H 1.48505 * 109.47272 * 209.99468 * 21 19 17 24 24 H 1.48501 * 109.47332 * 329.99434 * 21 19 17 25 25 H 1.08997 * 109.47199 * 300.00222 * 1 2 3 26 26 H 1.09004 * 109.46720 * 60.00240 * 1 2 3 27 27 H 1.09001 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47199 * 239.99778 * 2 1 3 29 29 H 1.09004 * 109.46720 * 119.99760 * 2 1 3 30 30 H 1.09005 * 109.46821 * 64.93329 * 3 2 1 31 31 H 1.08996 * 109.46806 * 304.93146 * 3 2 1 32 32 H 0.97001 * 118.53966 * 178.57266 * 8 6 4 33 33 H 1.09003 * 109.37985 * 138.33247 * 9 8 6 34 34 H 1.08998 * 109.38087 * 257.98487 * 9 8 6 35 35 H 1.09001 * 109.59585 * 69.48365 * 10 9 8 36 36 H 1.09000 * 109.59633 * 189.78566 * 10 9 8 37 37 H 1.09000 * 109.47546 * 309.12469 * 12 11 4 38 38 H 1.09002 * 109.47388 * 69.13136 * 12 11 4 39 39 H 1.09000 * 109.46749 * 305.01771 * 15 13 12 40 40 H 1.08996 * 109.47042 * 65.01418 * 15 13 12 41 41 H 1.09000 * 109.46832 * 185.01756 * 15 13 12 42 42 H 1.08997 * 109.46564 * 294.99850 * 16 13 12 43 43 H 1.09004 * 109.47170 * 54.99922 * 16 13 12 44 44 H 0.97001 * 120.00114 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5650 1.4443 -0.1239 5 1 3.9227 2.4735 -0.1549 6 6 4.1627 0.7442 1.0635 7 8 3.7042 0.9709 2.1632 8 7 5.1754 -0.1226 0.9580 9 6 5.7743 -0.4915 -0.3215 10 6 5.4123 0.5440 -1.3878 11 7 3.9566 0.7604 -1.3616 12 6 3.5149 1.5134 -2.5430 13 6 3.7358 0.6677 -3.7988 14 1 4.7888 0.3961 -3.8733 15 6 2.8863 -0.6020 -3.7145 16 6 3.3282 1.4731 -5.0342 17 6 3.6599 0.6883 -6.2772 18 1 4.1155 -0.2875 -6.1944 19 6 3.3809 1.2155 -7.5203 20 7 3.6699 0.5304 -8.6052 21 14 2.5923 2.9028 -7.6636 22 1 3.6524 3.9402 -7.7361 23 1 1.7610 2.9580 -8.8929 24 1 1.7365 3.1518 -6.4758 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.7506 1.9302 0.9309 31 1 1.6063 1.9812 -0.8425 32 1 5.5283 -0.5239 1.7675 33 1 6.8581 -0.5363 -0.2141 34 1 5.4022 -1.4696 -0.6263 35 1 5.9251 1.4821 -1.1754 36 1 5.7120 0.1778 -2.3697 37 1 2.4556 1.7515 -2.4470 38 1 4.0892 2.4366 -2.6211 39 1 3.1138 -1.1305 -2.7888 40 1 1.8299 -0.3340 -3.7298 41 1 3.1102 -1.2460 -4.5650 42 1 2.2564 1.6685 -5.0030 43 1 3.8699 2.4189 -5.0464 44 1 3.4739 0.9015 -9.4797 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602479322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:06 Heat of formation + Delta-G solvation = -71.341060 kcal Electronic energy + Delta-G solvation = -21890.017990 eV Core-core repulsion = 18840.627913 eV Total energy + Delta-G solvation = -3049.390077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.68521 -38.96953 -36.80905 -36.39328 -34.68753 -33.71835 -31.07839 -29.81940 -28.62767 -27.06240 -25.31085 -24.17508 -23.28085 -22.24575 -20.53519 -19.65216 -18.88615 -18.37589 -17.81109 -16.62716 -16.46656 -16.02456 -15.78580 -15.57687 -15.50384 -15.03267 -14.72651 -14.48171 -14.11368 -13.96113 -13.68452 -13.45825 -13.17786 -12.88561 -12.82013 -12.71314 -12.32426 -12.29261 -12.21310 -11.93951 -11.80424 -11.69010 -11.44384 -11.34778 -11.20157 -10.92841 -10.74958 -10.68995 -10.06122 -9.34053 -8.21992 -6.23350 1.38008 1.40585 1.51217 1.55172 2.29946 2.40686 2.74064 3.14113 3.49313 3.83598 3.88930 3.98830 4.13543 4.23973 4.28522 4.36025 4.48509 4.52780 4.59464 4.67742 4.77404 4.83725 4.85744 4.92036 5.01505 5.03518 5.05818 5.08023 5.18448 5.27350 5.41659 5.45397 5.49158 5.57304 5.61567 5.70354 5.78527 5.81658 5.96765 6.06892 6.26452 6.39680 6.85059 7.18985 7.40316 8.94614 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023730 B = 0.004929 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.668956 B = 5679.254327 C = 6171.887712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.112 4.112 3 C -0.097 4.097 4 C 0.070 3.930 5 H 0.075 0.925 6 C 0.531 3.469 7 O -0.591 6.591 8 N -0.709 5.709 9 C 0.118 3.882 10 C 0.023 3.977 11 N -0.520 5.520 12 C 0.065 3.935 13 C -0.063 4.063 14 H 0.060 0.940 15 C -0.113 4.113 16 C -0.008 4.008 17 C -0.512 4.512 18 H 0.038 0.962 19 C 0.002 3.998 20 N -0.955 5.955 21 Si 0.943 3.057 22 H -0.269 1.269 23 H -0.290 1.290 24 H -0.246 1.246 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.406 0.594 33 H 0.110 0.890 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.025 0.975 42 H 0.017 0.983 43 H 0.014 0.986 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 0.723 18.885 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.135 4.135 4 C -0.042 4.042 5 H 0.093 0.907 6 C 0.317 3.683 7 O -0.472 6.472 8 N -0.360 5.360 9 C -0.006 4.006 10 C -0.105 4.105 11 N -0.246 5.246 12 C -0.062 4.062 13 C -0.082 4.082 14 H 0.078 0.922 15 C -0.171 4.171 16 C -0.046 4.046 17 C -0.550 4.550 18 H 0.056 0.944 19 C -0.194 4.194 20 N -0.596 5.596 21 Si 0.767 3.233 22 H -0.195 1.195 23 H -0.216 1.216 24 H -0.170 1.170 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.242 0.758 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.055 0.945 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.035 0.965 43 H 0.032 0.968 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.855 0.468 19.069 19.094 hybrid contribution 0.380 1.101 -0.538 1.283 sum 1.235 1.569 18.530 18.638 Atomic orbital electron populations 1.21740 0.95388 1.01771 1.01664 1.21369 0.95970 0.96027 1.01629 1.21512 0.90964 0.98545 1.02523 1.21695 0.98011 0.96613 0.87862 0.90727 1.20163 0.79151 0.78991 0.89955 1.90714 1.62036 1.65699 1.28750 1.45559 1.34737 1.44319 1.11434 1.21660 0.99340 0.98435 0.81136 1.22679 0.87644 0.98956 1.01206 1.62353 1.13769 1.47865 1.00603 1.22208 1.01113 0.94298 0.88626 1.20879 0.99530 0.95628 0.92180 0.92218 1.21482 0.98597 0.96889 1.00109 1.19591 0.96232 0.95428 0.93376 1.21445 1.39002 1.03645 0.90924 0.94419 1.25945 0.96263 1.01568 0.95596 1.70070 1.50751 1.40359 0.98458 0.85771 0.79315 0.80079 0.78143 1.19477 1.21635 1.16954 0.92859 0.92544 0.92572 0.90830 0.94134 0.91243 0.90194 0.75777 0.87198 0.90229 0.93453 0.87857 0.90081 0.94451 0.91257 0.94207 0.95617 0.96516 0.96761 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.91 71.99 0.71 -2.39 16 2 C -0.11 -2.64 5.52 30.60 0.17 -2.47 16 3 C -0.10 -2.23 4.52 30.59 0.14 -2.09 16 4 C 0.07 1.59 2.18 44.06 0.10 1.69 16 5 H 0.08 1.66 8.11 -2.39 -0.02 1.64 16 6 C 0.53 13.02 6.32 87.68 0.55 13.57 16 7 O -0.59 -18.53 16.94 -3.03 -0.05 -18.58 16 8 N -0.71 -12.95 5.52 -466.10 -2.57 -15.53 16 9 C 0.12 1.71 7.39 86.47 0.64 2.35 16 10 C 0.02 0.44 5.46 86.24 0.47 0.91 16 11 N -0.52 -11.78 2.80 -875.89 -2.45 -14.24 16 12 C 0.06 1.73 4.22 86.30 0.36 2.09 16 13 C -0.06 -2.16 2.24 -10.79 -0.02 -2.19 16 14 H 0.06 2.07 6.24 -2.39 -0.01 2.05 16 15 C -0.11 -3.87 8.85 71.98 0.64 -3.23 16 16 C -0.01 -0.36 3.52 29.85 0.10 -0.26 16 17 C -0.51 -28.07 9.02 25.60 0.23 -27.84 16 18 H 0.04 2.28 7.30 -2.91 -0.02 2.25 16 19 C 0.00 0.13 5.47 84.65 0.46 0.59 16 20 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 21 Si 0.94 43.40 27.47 68.60 1.88 45.29 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 25 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.86 7.19 -2.39 -0.02 1.84 16 29 H 0.04 1.05 7.38 -2.39 -0.02 1.03 16 30 H 0.07 1.67 7.76 -2.38 -0.02 1.65 16 31 H 0.08 1.73 6.45 -2.39 -0.02 1.72 16 32 H 0.41 6.24 8.84 -92.71 -0.82 5.42 16 33 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 0.86 8.08 -2.39 -0.02 0.85 16 36 H 0.10 2.11 6.01 -2.39 -0.01 2.09 16 37 H 0.08 2.15 6.15 -2.39 -0.01 2.13 16 38 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 39 H 0.07 2.03 7.30 -2.39 -0.02 2.01 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 41 H 0.02 1.01 7.10 -2.39 -0.02 0.99 16 42 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 43 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 44 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -67.41 336.05 1.76 -65.65 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.10 Total: 15.45 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 4.56 Total: -19.26 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -4.73 Total: -88.55 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.05 Total: -18.58 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.29 kcal Total: -67.41 1.76 -65.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.691 kcal (2) G-P(sol) polarization free energy of solvation -67.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds