Wall clock time and date at job start Mon Mar 30 2020 00:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47509 * 2 1 4 4 C 1.52994 * 109.47474 * 175.08205 * 3 2 1 5 5 H 1.09001 * 109.38528 * 180.23078 * 4 3 2 6 6 C 1.50253 * 109.38589 * 60.54444 * 4 3 2 7 7 O 1.21285 * 118.62782 * 42.64500 * 6 4 3 8 8 N 1.33718 * 122.75270 * 222.64202 * 6 4 3 9 9 C 1.46014 * 122.92357 * 1.68749 * 8 6 4 10 10 C 1.52977 * 110.04448 * 341.84018 * 9 8 6 11 11 N 1.46897 * 109.38856 * 300.02628 * 4 3 2 12 12 C 1.46902 * 111.00101 * 293.82322 * 11 4 3 13 13 C 1.53001 * 109.47384 * 183.42422 * 12 11 4 14 14 H 1.08998 * 109.46559 * 59.23905 * 13 12 11 15 15 C 1.53003 * 109.47209 * 299.23973 * 13 12 11 16 16 C 1.52995 * 109.47153 * 179.23583 * 13 12 11 17 17 C 1.50697 * 109.46995 * 185.00116 * 16 13 12 18 18 H 1.08003 * 120.00369 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99838 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00133 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00074 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47109 * 59.99842 * 21 19 17 23 23 H 1.48494 * 109.47452 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47120 * 300.00341 * 21 19 17 25 25 H 1.09003 * 109.46530 * 299.99499 * 1 2 3 26 26 H 1.08997 * 109.47196 * 60.00158 * 1 2 3 27 27 H 1.09005 * 109.47135 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46883 * 240.00430 * 2 1 3 29 29 H 1.08998 * 109.47407 * 120.00594 * 2 1 3 30 30 H 1.09003 * 109.46994 * 295.08468 * 3 2 1 31 31 H 1.09002 * 109.46564 * 55.07649 * 3 2 1 32 32 H 0.96992 * 118.53912 * 181.68620 * 8 6 4 33 33 H 1.08998 * 109.37513 * 221.66147 * 9 8 6 34 34 H 1.09001 * 109.37333 * 102.01254 * 9 8 6 35 35 H 1.08997 * 109.59380 * 290.51776 * 10 9 8 36 36 H 1.08993 * 109.72045 * 170.14006 * 10 9 8 37 37 H 1.08995 * 109.47220 * 303.42833 * 12 11 4 38 38 H 1.09002 * 109.47343 * 63.42507 * 12 11 4 39 39 H 1.09004 * 109.46466 * 299.99536 * 15 13 12 40 40 H 1.08992 * 109.47301 * 59.99474 * 15 13 12 41 41 H 1.08996 * 109.46907 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47317 * 305.00355 * 16 13 12 43 43 H 1.08997 * 109.47189 * 64.99891 * 16 13 12 44 44 H 0.96998 * 119.99859 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5650 1.4442 0.1237 5 1 3.9265 2.4725 0.1276 6 6 4.1611 0.7128 -1.0457 7 8 3.7029 0.9124 -2.1508 8 7 5.1756 -0.1490 -0.9191 9 6 5.7743 -0.4863 0.3692 10 6 5.4094 0.5733 1.4105 11 7 3.9533 0.7859 1.3782 12 6 3.5092 1.5657 2.5413 13 6 4.0044 0.8951 3.8242 14 1 5.0926 0.8359 3.8064 15 6 3.4185 -0.5150 3.9215 16 6 3.5580 1.7175 5.0346 17 6 4.1481 1.1263 6.2889 18 1 4.7788 0.2516 6.2287 19 6 3.8837 1.7026 7.5132 20 7 3.1161 2.7680 7.5865 21 14 4.6158 0.9701 9.0680 22 1 6.0976 0.9903 8.9745 23 1 4.1835 1.7690 10.2427 24 1 4.1487 -0.4310 9.2225 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.7505 1.9302 -0.9308 31 1 1.6065 1.9810 0.8426 32 1 5.5296 -0.5688 -1.7186 33 1 6.8583 -0.5312 0.2636 34 1 5.4041 -1.4577 0.6968 35 1 5.9204 1.5072 1.1763 36 1 5.7071 0.2325 2.4020 37 1 3.9157 2.5751 2.4787 38 1 2.4203 1.6127 2.5529 39 1 2.3302 -0.4557 3.9393 40 1 3.7364 -1.1009 3.0592 41 1 3.7716 -0.9929 4.8353 42 1 3.9010 2.7460 4.9215 43 1 2.4703 1.7027 5.1028 44 1 2.9298 3.1732 8.4479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602479323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:09 Heat of formation + Delta-G solvation = -52.841339 kcal Electronic energy + Delta-G solvation = -21803.477902 eV Core-core repulsion = 18754.890034 eV Total energy + Delta-G solvation = -3048.587869 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.64791 -37.79436 -35.68001 -35.06535 -33.25136 -31.91966 -30.05062 -28.14804 -26.80140 -25.90263 -23.94356 -23.23767 -22.02847 -21.25342 -19.08469 -18.59656 -17.38992 -16.77487 -16.35013 -15.55825 -15.07865 -14.79573 -14.62809 -14.34974 -14.30352 -13.86123 -13.31178 -13.05435 -12.73525 -12.48313 -12.25736 -12.14020 -11.79809 -11.49755 -11.44406 -11.29424 -11.05736 -10.88769 -10.85977 -10.68501 -10.43274 -10.35381 -10.24744 -9.83050 -9.63968 -9.19865 -9.15521 -8.99722 -8.36030 -8.25837 -6.01017 -4.02613 2.60398 3.20908 3.31516 3.36734 3.38346 3.84841 4.44651 4.47933 4.75220 4.89050 5.02115 5.13402 5.17928 5.29824 5.34918 5.46060 5.52707 5.66417 5.73732 5.79578 5.81882 5.85530 5.96046 6.03951 6.07369 6.20157 6.33477 6.40302 6.41024 6.54238 6.59921 6.66452 6.90745 6.98722 7.08146 7.17545 7.21177 7.26588 7.64044 7.79310 7.98257 8.17371 8.41322 9.03365 9.61060 11.10366 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025442 B = 0.004561 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.286810 B = 6137.617550 C = 6695.938290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.099 4.099 4 C 0.067 3.933 5 H 0.071 0.929 6 C 0.533 3.467 7 O -0.556 6.556 8 N -0.720 5.720 9 C 0.116 3.884 10 C 0.024 3.976 11 N -0.519 5.519 12 C 0.057 3.943 13 C -0.084 4.084 14 H 0.058 0.942 15 C -0.123 4.123 16 C 0.028 3.972 17 C -0.514 4.514 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.396 0.604 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.111 0.889 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.054 0.946 42 H 0.012 0.988 43 H 0.017 0.983 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -5.535 -14.620 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.137 4.137 4 C -0.045 4.045 5 H 0.089 0.911 6 C 0.320 3.680 7 O -0.434 6.434 8 N -0.372 5.372 9 C -0.008 4.008 10 C -0.105 4.105 11 N -0.245 5.245 12 C -0.070 4.070 13 C -0.103 4.103 14 H 0.076 0.924 15 C -0.181 4.181 16 C -0.009 4.009 17 C -0.552 4.552 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.231 0.769 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.059 0.941 36 H 0.129 0.871 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.031 0.969 43 H 0.035 0.965 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.815 -5.657 -14.848 15.993 hybrid contribution 1.040 0.346 0.732 1.318 sum 2.855 -5.312 -14.116 15.350 Atomic orbital electron populations 1.21756 0.96278 1.01267 1.01442 1.21439 0.95192 0.96263 1.02655 1.21506 0.90985 0.98578 1.02598 1.21788 0.97934 0.96451 0.88329 0.91137 1.20115 0.78804 0.78788 0.90304 1.90724 1.60777 1.65011 1.26852 1.45582 1.35632 1.45503 1.10465 1.21533 0.97465 0.99297 0.82553 1.22649 0.89059 0.97813 1.00935 1.62606 1.12312 1.48267 1.01298 1.22437 1.01013 0.94251 0.89291 1.21327 0.99036 0.96361 0.93574 0.92420 1.21596 1.00092 0.96212 1.00158 1.19106 0.96749 0.94431 0.90659 1.21161 1.30043 1.12590 0.91447 0.92653 1.25009 0.95321 0.95012 0.99081 1.69950 1.37474 1.21074 1.25050 0.86704 0.79501 0.79192 0.82866 1.20347 1.21379 1.20260 0.92656 0.93282 0.93088 0.92826 0.90193 0.90872 0.90667 0.76868 0.90496 0.90757 0.94120 0.87060 0.95041 0.90289 0.93899 0.93996 0.92718 0.96931 0.96462 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.12 -1.51 5.51 -26.73 -0.15 -1.66 16 3 C -0.10 -1.27 4.50 -26.74 -0.12 -1.39 16 4 C 0.07 0.88 2.19 -69.09 -0.15 0.73 16 5 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 6 C 0.53 7.29 6.28 -11.67 -0.07 7.22 16 7 O -0.56 -9.25 16.89 5.55 0.09 -9.15 16 8 N -0.72 -7.76 5.52 -61.06 -0.34 -8.10 16 9 C 0.12 1.07 7.39 -4.32 -0.03 1.04 16 10 C 0.02 0.27 5.28 -3.68 -0.02 0.25 16 11 N -0.52 -6.84 2.98 -228.08 -0.68 -7.52 16 12 C 0.06 0.89 4.19 -3.82 -0.02 0.87 16 13 C -0.08 -1.55 1.88 -90.62 -0.17 -1.72 16 14 H 0.06 1.04 6.02 -51.93 -0.31 0.73 16 15 C -0.12 -2.16 8.85 37.16 0.33 -1.83 16 16 C 0.03 0.68 4.45 -27.89 -0.12 0.55 16 17 C -0.51 -13.75 8.41 -34.44 -0.29 -14.04 16 18 H 0.06 1.43 7.06 -52.48 -0.37 1.06 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 21 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.74 7.28 -51.92 -0.38 0.37 16 29 H 0.08 1.11 7.45 -51.93 -0.39 0.72 16 30 H 0.07 0.96 7.80 -51.93 -0.41 0.56 16 31 H 0.07 0.96 6.62 -51.93 -0.34 0.61 16 32 H 0.40 3.66 8.84 -40.82 -0.36 3.30 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.11 1.34 5.54 -51.93 -0.29 1.06 16 37 H 0.03 0.50 8.10 -51.93 -0.42 0.08 16 38 H 0.08 1.27 6.63 -51.93 -0.34 0.92 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.64 7.56 -51.93 -0.39 0.24 16 41 H 0.05 1.04 6.95 -51.93 -0.36 0.68 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -30.29 339.29 -8.36 -38.65 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.72 Total: 0.34 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -0.54 Total: -9.87 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: -0.28 Total: -41.17 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.29 -8.36 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.193 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds