Wall clock time and date at job start Mon Mar 30 2020 00:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47509 * 2 1 4 4 C 1.52994 * 109.47474 * 175.08205 * 3 2 1 5 5 H 1.09001 * 109.38528 * 180.23078 * 4 3 2 6 6 C 1.50253 * 109.38589 * 60.54444 * 4 3 2 7 7 O 1.21285 * 118.62782 * 42.64500 * 6 4 3 8 8 N 1.33718 * 122.75270 * 222.64202 * 6 4 3 9 9 C 1.46014 * 122.92357 * 1.68749 * 8 6 4 10 10 C 1.52977 * 110.04448 * 341.84018 * 9 8 6 11 11 N 1.46897 * 109.38856 * 300.02628 * 4 3 2 12 12 C 1.46902 * 111.00101 * 293.82322 * 11 4 3 13 13 C 1.53001 * 109.47384 * 183.42422 * 12 11 4 14 14 H 1.08998 * 109.46559 * 59.23905 * 13 12 11 15 15 C 1.53003 * 109.47209 * 299.23973 * 13 12 11 16 16 C 1.52995 * 109.47153 * 179.23583 * 13 12 11 17 17 C 1.50697 * 109.46995 * 185.00116 * 16 13 12 18 18 H 1.08003 * 120.00369 * 0.02562 * 17 16 13 19 19 C 1.37878 * 119.99838 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00133 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00074 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47109 * 59.99842 * 21 19 17 23 23 H 1.48494 * 109.47452 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47120 * 300.00341 * 21 19 17 25 25 H 1.09003 * 109.46530 * 299.99499 * 1 2 3 26 26 H 1.08997 * 109.47196 * 60.00158 * 1 2 3 27 27 H 1.09005 * 109.47135 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46883 * 240.00430 * 2 1 3 29 29 H 1.08998 * 109.47407 * 120.00594 * 2 1 3 30 30 H 1.09003 * 109.46994 * 295.08468 * 3 2 1 31 31 H 1.09002 * 109.46564 * 55.07649 * 3 2 1 32 32 H 0.96992 * 118.53912 * 181.68620 * 8 6 4 33 33 H 1.08998 * 109.37513 * 221.66147 * 9 8 6 34 34 H 1.09001 * 109.37333 * 102.01254 * 9 8 6 35 35 H 1.08997 * 109.59380 * 290.51776 * 10 9 8 36 36 H 1.08993 * 109.72045 * 170.14006 * 10 9 8 37 37 H 1.08995 * 109.47220 * 303.42833 * 12 11 4 38 38 H 1.09002 * 109.47343 * 63.42507 * 12 11 4 39 39 H 1.09004 * 109.46466 * 299.99536 * 15 13 12 40 40 H 1.08992 * 109.47301 * 59.99474 * 15 13 12 41 41 H 1.08996 * 109.46907 * 179.97438 * 15 13 12 42 42 H 1.09001 * 109.47317 * 305.00355 * 16 13 12 43 43 H 1.08997 * 109.47189 * 64.99891 * 16 13 12 44 44 H 0.96998 * 119.99859 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5650 1.4442 0.1237 5 1 3.9265 2.4725 0.1276 6 6 4.1611 0.7128 -1.0457 7 8 3.7029 0.9124 -2.1508 8 7 5.1756 -0.1490 -0.9191 9 6 5.7743 -0.4863 0.3692 10 6 5.4094 0.5733 1.4105 11 7 3.9533 0.7859 1.3782 12 6 3.5092 1.5657 2.5413 13 6 4.0044 0.8951 3.8242 14 1 5.0926 0.8359 3.8064 15 6 3.4185 -0.5150 3.9215 16 6 3.5580 1.7175 5.0346 17 6 4.1481 1.1263 6.2889 18 1 4.7788 0.2516 6.2287 19 6 3.8837 1.7026 7.5132 20 7 3.1161 2.7680 7.5865 21 14 4.6158 0.9701 9.0680 22 1 6.0976 0.9903 8.9745 23 1 4.1835 1.7690 10.2427 24 1 4.1487 -0.4310 9.2225 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.7505 1.9302 -0.9308 31 1 1.6065 1.9810 0.8426 32 1 5.5296 -0.5688 -1.7186 33 1 6.8583 -0.5312 0.2636 34 1 5.4041 -1.4577 0.6968 35 1 5.9204 1.5072 1.1763 36 1 5.7071 0.2325 2.4020 37 1 3.9157 2.5751 2.4787 38 1 2.4203 1.6127 2.5529 39 1 2.3302 -0.4557 3.9393 40 1 3.7364 -1.1009 3.0592 41 1 3.7716 -0.9929 4.8353 42 1 3.9010 2.7460 4.9215 43 1 2.4703 1.7027 5.1028 44 1 2.9298 3.1732 8.4479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602479323.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:09 Heat of formation + Delta-G solvation = -72.123713 kcal Electronic energy + Delta-G solvation = -21804.314049 eV Core-core repulsion = 18754.890034 eV Total energy + Delta-G solvation = -3049.424015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.70002 -39.01336 -36.74289 -36.43682 -34.73396 -33.56599 -31.06105 -29.45790 -28.45870 -27.07552 -25.51383 -24.20558 -23.54478 -22.27956 -20.52144 -19.63511 -18.55661 -18.28424 -17.77965 -16.60801 -16.59055 -16.10575 -15.76082 -15.64339 -15.55160 -14.99063 -14.49210 -14.34711 -14.08362 -13.94070 -13.62877 -13.29512 -13.14478 -12.82174 -12.75639 -12.68877 -12.53257 -12.33086 -12.21405 -12.13256 -11.87301 -11.70205 -11.47053 -11.31478 -11.11152 -10.89742 -10.71329 -10.47847 -10.05794 -9.37262 -8.13251 -6.21703 1.43792 1.45566 1.52991 1.54530 2.29698 2.44937 2.75101 3.21036 3.49196 3.82757 3.90497 3.97557 4.12542 4.22772 4.29782 4.35200 4.47384 4.54542 4.61587 4.67781 4.77895 4.83343 4.87884 4.95267 5.00061 5.03726 5.07179 5.09312 5.25103 5.35368 5.40128 5.53156 5.54042 5.58393 5.60450 5.74339 5.87349 5.91906 5.93914 6.07063 6.25543 6.34413 6.94970 7.18859 7.46695 8.98509 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025442 B = 0.004561 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.286810 B = 6137.617550 C = 6695.938290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.097 4.097 4 C 0.067 3.933 5 H 0.070 0.930 6 C 0.532 3.468 7 O -0.590 6.590 8 N -0.709 5.709 9 C 0.119 3.881 10 C 0.017 3.983 11 N -0.514 5.514 12 C 0.069 3.931 13 C -0.072 4.072 14 H 0.066 0.934 15 C -0.113 4.113 16 C 0.032 3.968 17 C -0.524 4.524 18 H 0.064 0.936 19 C -0.002 4.002 20 N -0.936 5.936 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.289 1.289 24 H -0.268 1.268 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.407 0.593 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.110 0.890 37 H 0.025 0.975 38 H 0.072 0.928 39 H 0.033 0.967 40 H 0.070 0.930 41 H 0.038 0.962 42 H -0.015 1.015 43 H -0.011 1.011 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.871 -7.228 -14.991 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.136 4.136 4 C -0.045 4.045 5 H 0.088 0.912 6 C 0.319 3.681 7 O -0.471 6.471 8 N -0.360 5.360 9 C -0.004 4.004 10 C -0.111 4.111 11 N -0.239 5.239 12 C -0.058 4.058 13 C -0.091 4.091 14 H 0.085 0.915 15 C -0.170 4.170 16 C -0.005 4.005 17 C -0.562 4.562 18 H 0.082 0.918 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.782 3.218 22 H -0.192 1.192 23 H -0.215 1.215 24 H -0.193 1.193 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.243 0.757 33 H 0.129 0.871 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.128 0.872 37 H 0.043 0.957 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.003 0.997 43 H 0.007 0.993 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.266 -7.387 -15.222 17.232 hybrid contribution 0.623 0.882 0.829 1.361 sum 3.889 -6.504 -14.393 16.266 Atomic orbital electron populations 1.21740 0.95323 1.01885 1.01608 1.21340 0.96029 0.95764 1.01619 1.21484 0.91036 0.98724 1.02308 1.21766 0.98079 0.96479 0.88133 0.91228 1.20091 0.79228 0.79160 0.89646 1.90712 1.62122 1.66388 1.27891 1.45544 1.34472 1.44273 1.11688 1.21680 0.99392 0.98508 0.80868 1.22779 0.87671 0.98799 1.01821 1.62574 1.13762 1.47286 1.00323 1.22136 1.00541 0.93905 0.89202 1.21109 0.99515 0.96113 0.92351 0.91543 1.21487 0.99361 0.95582 1.00566 1.19005 0.94748 0.93896 0.92897 1.21610 1.29624 1.12590 0.92412 0.91766 1.25910 0.95817 0.95419 1.02721 1.70096 1.39174 1.22702 1.25769 0.85623 0.79095 0.78534 0.78537 1.19173 1.21505 1.19278 0.92777 0.92827 0.92266 0.93806 0.91005 0.91259 0.90772 0.75669 0.87070 0.89807 0.93976 0.87205 0.95720 0.90955 0.94813 0.91145 0.94311 0.99671 0.99295 0.93117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.91 71.98 0.71 -2.56 16 2 C -0.11 -2.73 5.51 30.59 0.17 -2.56 16 3 C -0.10 -2.47 4.50 30.59 0.14 -2.33 16 4 C 0.07 1.70 2.19 44.03 0.10 1.80 16 5 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 6 C 0.53 13.77 6.28 87.68 0.55 14.32 16 7 O -0.59 -19.17 16.89 -3.04 -0.05 -19.22 16 8 N -0.71 -13.41 5.52 -466.09 -2.57 -15.98 16 9 C 0.12 1.77 7.39 86.46 0.64 2.41 16 10 C 0.02 0.35 5.28 86.24 0.46 0.81 16 11 N -0.51 -12.77 2.98 -875.51 -2.61 -15.38 16 12 C 0.07 2.14 4.19 86.30 0.36 2.50 16 13 C -0.07 -2.62 1.88 -10.79 -0.02 -2.64 16 14 H 0.07 2.31 6.02 -2.39 -0.01 2.30 16 15 C -0.11 -3.80 8.85 71.98 0.64 -3.17 16 16 C 0.03 1.59 4.45 29.85 0.13 1.72 16 17 C -0.52 -28.12 8.41 25.60 0.22 -27.90 16 18 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 19 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 20 N -0.94 -56.06 13.29 21.45 0.28 -55.77 16 21 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 25 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.04 1.17 7.28 -2.38 -0.02 1.15 16 29 H 0.07 1.89 7.45 -2.39 -0.02 1.88 16 30 H 0.07 1.81 7.80 -2.39 -0.02 1.80 16 31 H 0.07 1.88 6.62 -2.39 -0.02 1.86 16 32 H 0.41 6.38 8.84 -92.71 -0.82 5.56 16 33 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.04 0.88 8.08 -2.39 -0.02 0.86 16 36 H 0.11 2.34 5.54 -2.39 -0.01 2.32 16 37 H 0.02 0.79 8.10 -2.39 -0.02 0.77 16 38 H 0.07 2.33 6.63 -2.39 -0.02 2.32 16 39 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.07 1.97 7.56 -2.39 -0.02 1.95 16 41 H 0.04 1.42 6.95 -2.39 -0.02 1.40 16 42 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -65.66 339.29 1.78 -63.88 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.15 Total: 14.58 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 4.55 Total: -17.22 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -4.90 Total: -87.13 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.05 Total: -19.22 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -65.66 1.78 -63.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602479323.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.240 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds