Wall clock time and date at job start Mon Mar 30 2020 00:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46766 * 2 1 4 4 C 1.53001 * 109.46766 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47594 * 305.00284 * 4 3 2 6 6 C 1.52999 * 109.47328 * 185.00099 * 4 3 2 7 7 N 1.46498 * 109.47242 * 64.99965 * 4 3 2 8 8 C 1.34774 * 120.00279 * 204.99544 * 7 4 3 9 9 O 1.21588 * 120.00027 * 355.03132 * 8 7 4 10 10 N 1.34772 * 120.00400 * 175.02056 * 8 7 4 11 11 C 1.46930 * 120.63619 * 184.94735 * 10 8 7 12 12 C 1.52757 * 109.01168 * 233.59098 * 11 10 8 13 13 C 1.53044 * 109.38189 * 305.58715 * 12 11 10 14 14 C 1.50700 * 109.44705 * 181.25822 * 13 12 11 15 15 H 1.08001 * 119.99629 * 239.93484 * 14 13 12 16 16 C 1.37868 * 120.00308 * 59.93755 * 14 13 12 17 17 N 1.31516 * 120.00097 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00085 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47342 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47411 * 119.99936 * 18 16 14 21 21 H 1.48494 * 109.47271 * 240.00118 * 18 16 14 22 22 C 1.53039 * 109.53707 * 61.24017 * 13 12 11 23 23 C 1.46926 * 120.62775 * 5.23495 * 10 8 7 24 24 H 1.09002 * 109.47021 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47090 * 299.99986 * 1 2 3 26 26 H 1.08996 * 109.47278 * 59.99945 * 1 2 3 27 27 H 1.08996 * 109.47090 * 240.00013 * 2 1 3 28 28 H 1.08996 * 109.47278 * 120.00055 * 2 1 3 29 29 H 1.08996 * 109.47305 * 60.00145 * 3 2 1 30 30 H 1.09001 * 109.47631 * 299.99782 * 3 2 1 31 31 H 1.08999 * 109.47690 * 179.97438 * 6 4 3 32 32 H 1.09004 * 109.47271 * 300.00286 * 6 4 3 33 33 H 1.09001 * 109.47154 * 59.99806 * 6 4 3 34 34 H 0.97003 * 119.99986 * 25.00296 * 7 4 3 35 35 H 1.09001 * 109.58442 * 353.42673 * 11 10 8 36 36 H 1.08997 * 109.58392 * 113.84611 * 11 10 8 37 37 H 1.08995 * 109.56541 * 185.55433 * 12 11 10 38 38 H 1.08995 * 109.39205 * 65.51290 * 12 11 10 39 39 H 1.09003 * 109.46093 * 301.22141 * 13 12 11 40 40 H 0.96997 * 120.00144 * 180.02562 * 17 16 14 41 41 H 1.09008 * 109.49243 * 178.68284 * 22 13 12 42 42 H 1.09001 * 109.52484 * 58.60825 * 22 13 12 43 43 H 1.09003 * 109.58823 * 246.15198 * 23 10 8 44 44 H 1.08999 * 109.59033 * 6.43565 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0799 2.8795 0.1264 7 7 4.0588 0.8586 -1.2508 8 6 5.2808 0.2922 -1.2981 9 8 6.0134 0.3452 -0.3291 10 7 5.6908 -0.3333 -2.4192 11 6 6.9741 -1.0482 -2.4512 12 6 7.8016 -0.5331 -3.6274 13 6 6.9831 -0.6523 -4.9150 14 6 7.8092 -0.1733 -6.0808 15 1 7.4674 0.6582 -6.6794 16 6 9.0012 -0.7964 -6.3833 17 7 9.4177 -1.8086 -5.6542 18 14 10.0249 -0.2031 -7.8289 19 1 9.3416 0.9421 -8.4824 20 1 11.3608 0.2289 -7.3453 21 1 10.1862 -1.3079 -8.8078 22 6 5.7196 0.2035 -4.7995 23 6 4.8659 -0.3080 -3.6348 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 5.1699 2.8796 0.1273 32 1 3.7169 3.4689 -0.7156 33 1 3.7162 3.3140 1.0576 34 1 3.5030 0.8798 -2.0456 35 1 7.5141 -0.8713 -1.5210 36 1 6.7944 -2.1162 -2.5743 37 1 8.7126 -1.1242 -3.7194 38 1 8.0615 0.5117 -3.4570 39 1 6.7030 -1.6939 -5.0722 40 1 10.2565 -2.2468 -5.8668 41 1 5.1489 0.1366 -5.7258 42 1 5.9981 1.2416 -4.6180 43 1 4.5108 -1.3144 -3.8565 44 1 4.0141 0.3552 -3.4847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611619137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:01 Heat of formation + Delta-G solvation = -54.042326 kcal Electronic energy + Delta-G solvation = -21410.334547 eV Core-core repulsion = 18361.694600 eV Total energy + Delta-G solvation = -3048.639947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.02523 -37.49183 -36.23228 -33.67523 -33.31808 -31.32566 -30.64449 -29.52028 -26.83158 -26.07146 -23.16510 -22.47826 -21.83980 -20.99404 -20.09657 -18.87796 -17.59172 -16.42467 -16.16095 -15.07904 -14.90669 -14.65050 -14.43355 -14.14884 -13.70579 -13.38192 -13.10962 -12.81786 -12.76927 -12.58635 -12.40832 -12.26996 -12.05876 -11.78137 -11.56938 -11.10430 -11.07312 -10.93873 -10.87025 -10.70686 -10.61306 -10.40245 -10.03698 -9.68565 -9.53850 -9.15938 -8.90348 -8.84901 -8.35237 -7.84508 -6.00331 -4.07023 3.08198 3.28681 3.37201 3.40423 3.63129 4.25447 4.42469 4.54253 4.80631 4.82741 5.21336 5.29264 5.29545 5.36836 5.38716 5.47338 5.60936 5.67304 5.74610 5.78855 5.82477 5.86160 5.94809 6.03715 6.12268 6.14725 6.29360 6.30979 6.45666 6.53833 6.64602 6.79904 6.86083 7.01202 7.19722 7.28245 7.54251 7.73528 7.95555 8.08744 8.38527 8.42344 8.96484 9.02826 9.58052 11.05035 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033606 B = 0.003947 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.987465 B = 7091.610257 C = 7267.112679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.126 4.126 4 C 0.160 3.840 5 H 0.084 0.916 6 C -0.164 4.164 7 N -0.747 5.747 8 C 0.705 3.295 9 O -0.601 6.601 10 N -0.619 5.619 11 C 0.127 3.873 12 C -0.124 4.124 13 C 0.049 3.951 14 C -0.513 4.513 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.124 4.124 23 C 0.114 3.886 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.393 0.607 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.103 0.897 38 H 0.037 0.963 39 H 0.027 0.973 40 H 0.260 0.740 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.623 4.400 9.137 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.164 4.164 4 C 0.055 3.945 5 H 0.102 0.898 6 C -0.223 4.223 7 N -0.405 5.405 8 C 0.407 3.593 9 O -0.481 6.481 10 N -0.355 5.355 11 C 0.005 3.995 12 C -0.162 4.162 13 C 0.031 3.969 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.718 3.282 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.162 4.162 23 C -0.009 4.009 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.229 0.771 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.937 4.282 9.862 18.404 hybrid contribution 0.350 0.357 -1.299 1.391 sum -14.587 4.639 8.563 17.540 Atomic orbital electron populations 1.21776 0.95943 1.01584 1.01611 1.21529 0.95530 0.96626 1.02608 1.21932 0.94237 0.97434 1.02808 1.20753 0.92619 0.94115 0.87048 0.89782 1.22204 1.02613 0.96158 1.01298 1.45405 1.17635 1.63938 1.13534 1.15887 0.81685 0.78318 0.83456 1.90853 1.54835 1.66088 1.36297 1.47449 1.22726 1.55329 1.10033 1.21658 0.82439 0.94396 1.01021 1.21939 1.00907 1.00154 0.93231 1.18624 0.90144 0.94917 0.93218 1.21225 1.05147 1.16097 1.12616 0.92734 1.24964 0.97616 0.94910 0.96508 1.69856 1.21919 1.22156 1.38936 0.86569 0.80276 0.78663 0.82666 1.19883 1.21062 1.21074 1.22009 0.98583 1.00437 0.95161 1.21688 0.92872 1.00477 0.85886 0.92826 0.92886 0.92803 0.91721 0.91938 0.90564 0.91525 0.91720 0.92778 0.92156 0.77099 0.90592 0.92682 0.87878 0.94423 0.95500 0.93020 0.92229 0.92949 0.92042 0.92354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.74 16 2 C -0.13 -1.09 5.82 -26.73 -0.16 -1.25 16 3 C -0.13 -1.07 4.75 -26.73 -0.13 -1.19 16 4 C 0.16 1.87 2.54 -67.93 -0.17 1.70 16 5 H 0.08 1.14 7.65 -51.93 -0.40 0.74 16 6 C -0.16 -1.87 9.48 37.16 0.35 -1.52 16 7 N -0.75 -10.17 4.44 -58.68 -0.26 -10.43 16 8 C 0.70 12.82 8.26 -86.92 -0.72 12.10 16 9 O -0.60 -13.00 15.43 5.29 0.08 -12.92 16 10 N -0.62 -11.41 2.98 -178.76 -0.53 -11.94 16 11 C 0.13 2.61 6.41 -3.93 -0.03 2.59 16 12 C -0.12 -2.91 5.14 -26.83 -0.14 -3.05 16 13 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 14 C -0.51 -13.72 8.56 -34.44 -0.29 -14.02 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.89 11.30 55.43 0.63 -24.26 16 18 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 23 C 0.11 1.84 6.39 -3.71 -0.02 1.82 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.63 7.75 -51.93 -0.40 0.22 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.93 8.10 -51.93 -0.42 0.50 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.39 4.57 6.09 -40.82 -0.25 4.32 16 35 H 0.08 1.61 6.99 -51.93 -0.36 1.25 16 36 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.10 2.70 6.03 -51.93 -0.31 2.38 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.75 5.64 -51.93 -0.29 0.46 16 LS Contribution 343.25 15.07 5.17 5.17 Total: -1.00 -30.01 343.25 -9.19 -39.20 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.90 Total: 2.69 kcal Atomic # 6 Polarization: -2.18 SS G_CDS: -1.36 Total: -3.54 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.17 Total: -46.64 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.01 -9.19 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611619137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.838 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds