Wall clock time and date at job start Mon Mar 30 2020 00:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46766 * 2 1 4 4 C 1.53001 * 109.46766 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47594 * 305.00284 * 4 3 2 6 6 C 1.52999 * 109.47328 * 185.00099 * 4 3 2 7 7 N 1.46498 * 109.47242 * 64.99965 * 4 3 2 8 8 C 1.34774 * 120.00279 * 204.99544 * 7 4 3 9 9 O 1.21588 * 120.00027 * 355.03132 * 8 7 4 10 10 N 1.34772 * 120.00400 * 175.02056 * 8 7 4 11 11 C 1.46930 * 120.63619 * 184.94735 * 10 8 7 12 12 C 1.52757 * 109.01168 * 233.59098 * 11 10 8 13 13 C 1.53044 * 109.38189 * 305.58715 * 12 11 10 14 14 C 1.50700 * 109.44705 * 181.25822 * 13 12 11 15 15 H 1.08001 * 119.99629 * 239.93484 * 14 13 12 16 16 C 1.37868 * 120.00308 * 59.93755 * 14 13 12 17 17 N 1.31516 * 120.00097 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00085 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47342 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47411 * 119.99936 * 18 16 14 21 21 H 1.48494 * 109.47271 * 240.00118 * 18 16 14 22 22 C 1.53039 * 109.53707 * 61.24017 * 13 12 11 23 23 C 1.46926 * 120.62775 * 5.23495 * 10 8 7 24 24 H 1.09002 * 109.47021 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47090 * 299.99986 * 1 2 3 26 26 H 1.08996 * 109.47278 * 59.99945 * 1 2 3 27 27 H 1.08996 * 109.47090 * 240.00013 * 2 1 3 28 28 H 1.08996 * 109.47278 * 120.00055 * 2 1 3 29 29 H 1.08996 * 109.47305 * 60.00145 * 3 2 1 30 30 H 1.09001 * 109.47631 * 299.99782 * 3 2 1 31 31 H 1.08999 * 109.47690 * 179.97438 * 6 4 3 32 32 H 1.09004 * 109.47271 * 300.00286 * 6 4 3 33 33 H 1.09001 * 109.47154 * 59.99806 * 6 4 3 34 34 H 0.97003 * 119.99986 * 25.00296 * 7 4 3 35 35 H 1.09001 * 109.58442 * 353.42673 * 11 10 8 36 36 H 1.08997 * 109.58392 * 113.84611 * 11 10 8 37 37 H 1.08995 * 109.56541 * 185.55433 * 12 11 10 38 38 H 1.08995 * 109.39205 * 65.51290 * 12 11 10 39 39 H 1.09003 * 109.46093 * 301.22141 * 13 12 11 40 40 H 0.96997 * 120.00144 * 180.02562 * 17 16 14 41 41 H 1.09008 * 109.49243 * 178.68284 * 22 13 12 42 42 H 1.09001 * 109.52484 * 58.60825 * 22 13 12 43 43 H 1.09003 * 109.58823 * 246.15198 * 23 10 8 44 44 H 1.08999 * 109.59033 * 6.43565 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0799 2.8795 0.1264 7 7 4.0588 0.8586 -1.2508 8 6 5.2808 0.2922 -1.2981 9 8 6.0134 0.3452 -0.3291 10 7 5.6908 -0.3333 -2.4192 11 6 6.9741 -1.0482 -2.4512 12 6 7.8016 -0.5331 -3.6274 13 6 6.9831 -0.6523 -4.9150 14 6 7.8092 -0.1733 -6.0808 15 1 7.4674 0.6582 -6.6794 16 6 9.0012 -0.7964 -6.3833 17 7 9.4177 -1.8086 -5.6542 18 14 10.0249 -0.2031 -7.8289 19 1 9.3416 0.9421 -8.4824 20 1 11.3608 0.2289 -7.3453 21 1 10.1862 -1.3079 -8.8078 22 6 5.7196 0.2035 -4.7995 23 6 4.8659 -0.3080 -3.6348 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 5.1699 2.8796 0.1273 32 1 3.7169 3.4689 -0.7156 33 1 3.7162 3.3140 1.0576 34 1 3.5030 0.8798 -2.0456 35 1 7.5141 -0.8713 -1.5210 36 1 6.7944 -2.1162 -2.5743 37 1 8.7126 -1.1242 -3.7194 38 1 8.0615 0.5117 -3.4570 39 1 6.7030 -1.6939 -5.0722 40 1 10.2565 -2.2468 -5.8668 41 1 5.1489 0.1366 -5.7258 42 1 5.9981 1.2416 -4.6180 43 1 4.5108 -1.3144 -3.8565 44 1 4.0141 0.3552 -3.4847 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611619137.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:01 Heat of formation + Delta-G solvation = -70.939542 kcal Electronic energy + Delta-G solvation = -21411.067266 eV Core-core repulsion = 18361.694600 eV Total energy + Delta-G solvation = -3049.372666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43040 -38.86595 -37.49727 -35.39199 -34.39732 -32.97905 -32.09715 -30.91590 -27.94135 -27.52278 -24.85981 -24.00915 -22.81675 -22.01808 -21.47783 -20.42808 -19.05720 -18.32080 -17.46765 -16.54673 -16.37892 -16.05776 -15.56389 -15.18015 -15.00382 -14.84735 -14.58964 -14.34146 -14.18727 -13.81478 -13.56045 -13.44036 -13.11835 -12.97278 -12.86846 -12.83469 -12.42738 -12.34730 -12.16533 -11.93114 -11.81725 -11.59585 -11.47954 -11.42694 -11.25344 -10.91359 -10.78180 -10.40849 -10.13619 -9.35924 -8.07070 -6.21048 1.40225 1.43135 1.53146 1.75425 2.19450 2.44196 2.99710 3.19540 3.76354 4.06439 4.09085 4.14890 4.25429 4.34144 4.41800 4.49460 4.54022 4.60578 4.67082 4.72451 4.80200 4.86672 4.91168 4.93741 4.98709 5.04157 5.09526 5.20293 5.24105 5.31044 5.34240 5.36509 5.47864 5.52162 5.52548 5.66722 5.71051 5.98833 6.11288 6.13113 6.39116 6.90728 7.06230 7.47165 7.62671 8.96497 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033606 B = 0.003947 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.987465 B = 7091.610257 C = 7267.112679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.114 4.114 4 C 0.156 3.844 5 H 0.062 0.938 6 C -0.160 4.160 7 N -0.728 5.728 8 C 0.701 3.299 9 O -0.640 6.640 10 N -0.623 5.623 11 C 0.139 3.861 12 C -0.111 4.111 13 C 0.046 3.954 14 C -0.531 4.531 15 H 0.052 0.948 16 C 0.012 3.988 17 N -0.916 5.916 18 Si 0.951 3.049 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.280 1.280 22 C -0.116 4.116 23 C 0.119 3.881 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.028 0.972 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.406 0.594 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.018 0.982 39 H 0.005 0.995 40 H 0.260 0.740 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.185 5.545 8.806 20.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.152 4.152 4 C 0.052 3.948 5 H 0.080 0.920 6 C -0.218 4.218 7 N -0.386 5.386 8 C 0.402 3.598 9 O -0.523 6.523 10 N -0.359 5.359 11 C 0.016 3.984 12 C -0.150 4.150 13 C 0.027 3.973 14 C -0.570 4.570 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.555 5.555 18 Si 0.777 3.223 19 H -0.192 1.192 20 H -0.211 1.211 21 H -0.206 1.206 22 C -0.154 4.154 23 C -0.004 4.004 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.244 0.756 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.037 0.963 39 H 0.023 0.977 40 H 0.069 0.931 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.557 5.448 9.515 20.699 hybrid contribution 1.144 0.010 -1.169 1.636 sum -16.413 5.458 8.345 19.204 Atomic orbital electron populations 1.21744 0.94596 1.01830 1.02404 1.21523 0.96674 0.96564 1.01625 1.21878 0.91155 0.97646 1.04537 1.20946 0.94932 0.93682 0.85282 0.91998 1.22161 1.00229 0.96232 1.03194 1.45314 1.15930 1.62515 1.14872 1.16069 0.82657 0.78324 0.82702 1.90827 1.56325 1.67464 1.37674 1.47398 1.22125 1.55271 1.11135 1.21301 0.83380 0.94766 0.98962 1.21699 1.00345 0.98282 0.94701 1.18603 0.91997 0.94415 0.92283 1.21618 1.05803 1.15995 1.13535 0.92934 1.25716 0.98846 0.95150 0.98935 1.69987 1.22229 1.23088 1.40225 0.85616 0.78537 0.78370 0.79772 1.19154 1.21143 1.20574 1.21867 0.97129 0.98939 0.97473 1.21789 0.92886 1.02202 0.83477 0.92944 0.92066 0.92016 0.92723 0.93044 0.88681 0.89859 0.95321 0.91468 0.89805 0.75568 0.91710 0.92178 0.90952 0.96337 0.97693 0.93087 0.90728 0.93807 0.90702 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.13 -1.88 5.82 30.59 0.18 -1.70 16 3 C -0.11 -1.55 4.75 30.59 0.15 -1.40 16 4 C 0.16 3.35 2.54 44.99 0.11 3.47 16 5 H 0.06 1.64 7.65 -2.39 -0.02 1.62 16 6 C -0.16 -3.34 9.48 71.98 0.68 -2.66 16 7 N -0.73 -18.35 4.44 -457.82 -2.03 -20.38 16 8 C 0.70 25.01 8.26 179.06 1.48 26.49 16 9 O -0.64 -28.10 15.43 -3.99 -0.06 -28.16 16 10 N -0.62 -22.50 2.98 -837.75 -2.50 -24.99 16 11 C 0.14 5.85 6.41 86.22 0.55 6.40 16 12 C -0.11 -5.42 5.14 30.53 0.16 -5.26 16 13 C 0.05 2.20 2.07 -11.51 -0.02 2.18 16 14 C -0.53 -28.72 8.56 25.60 0.22 -28.50 16 15 H 0.05 2.79 7.74 -2.91 -0.02 2.77 16 16 C 0.01 0.66 5.30 84.65 0.45 1.11 16 17 N -0.92 -52.44 11.30 21.44 0.24 -52.19 16 18 Si 0.95 43.47 29.54 68.60 2.03 45.49 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 22 C -0.12 -4.34 5.30 30.67 0.16 -4.18 16 23 C 0.12 3.55 6.39 86.36 0.55 4.10 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.05 0.92 7.75 -2.39 -0.02 0.90 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.03 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.41 8.01 6.09 -92.71 -0.56 7.45 16 35 H 0.06 2.85 6.99 -2.39 -0.02 2.84 16 36 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.07 3.97 6.03 -2.39 -0.01 3.95 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.10 2.17 5.64 -2.39 -0.01 2.15 16 Total: -1.00 -66.97 343.25 3.45 -63.52 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.39 Total: 17.68 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.38 Total: -0.97 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -4.29 Total: -97.57 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.06 Total: -28.16 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -66.97 3.45 -63.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611619137.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.418 kcal (2) G-P(sol) polarization free energy of solvation -66.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds