Wall clock time and date at job start Mon Mar 30 2020 01:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 C 1.53001 * 109.47293 * 119.99794 * 2 1 3 5 5 N 1.46904 * 109.46809 * 60.95581 * 4 2 1 6 6 C 1.46893 * 110.99873 * 73.45144 * 5 4 2 7 7 C 1.50701 * 109.47438 * 279.61906 * 6 5 4 8 8 H 1.07999 * 119.99438 * 2.95279 * 7 6 5 9 9 C 1.37870 * 120.00295 * 182.93964 * 7 6 5 10 10 N 1.31515 * 119.99988 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00077 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47078 * 90.00588 * 11 9 7 13 13 H 1.48503 * 109.47152 * 210.00812 * 11 9 7 14 14 H 1.48496 * 109.46985 * 330.00284 * 11 9 7 15 15 C 1.46903 * 110.99623 * 197.40745 * 5 4 2 16 16 C 1.52998 * 109.47412 * 66.04482 * 15 5 4 17 17 N 1.46501 * 109.47047 * 179.97438 * 16 15 5 18 18 C 1.46762 * 124.35008 * 90.00009 * 17 16 15 19 19 C 1.54477 * 105.54815 * 197.07398 * 18 17 16 20 20 C 1.54622 * 101.76868 * 334.54003 * 19 18 17 21 21 C 1.34625 * 124.46790 * 270.02232 * 17 16 15 22 22 O 1.21284 * 124.90849 * 359.55976 * 21 17 16 23 23 H 1.08998 * 109.47222 * 300.00082 * 1 2 3 24 24 H 1.09005 * 109.47403 * 60.00112 * 1 2 3 25 25 H 1.09003 * 109.47064 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47222 * 239.99918 * 2 1 3 27 27 H 1.09004 * 109.46885 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47193 * 299.99286 * 3 2 1 29 29 H 1.08998 * 109.47161 * 59.99880 * 3 2 1 30 30 H 1.09000 * 109.46865 * 300.95551 * 4 2 1 31 31 H 1.08997 * 109.47543 * 180.95526 * 4 2 1 32 32 H 1.08997 * 109.47380 * 39.62514 * 6 5 4 33 33 H 1.09006 * 109.46718 * 159.62402 * 6 5 4 34 34 H 0.97002 * 120.00251 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47145 * 306.04231 * 15 5 4 36 36 H 1.08997 * 109.46981 * 186.04711 * 15 5 4 37 37 H 1.09000 * 109.47171 * 59.99765 * 16 15 5 38 38 H 1.08997 * 109.47235 * 300.00073 * 16 15 5 39 39 H 1.09005 * 110.24367 * 78.03347 * 18 17 16 40 40 H 1.08998 * 110.24504 * 316.12534 * 18 17 16 41 41 H 1.09000 * 110.96893 * 92.66522 * 19 18 17 42 42 H 1.09003 * 110.96688 * 216.42000 * 19 18 17 43 43 H 1.09003 * 110.48626 * 143.46882 * 20 19 18 44 44 H 1.09000 * 110.49243 * 266.12056 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5692 -2.1127 1.2378 6 6 2.3017 -2.9080 0.2434 7 6 1.7234 -2.6571 -1.1254 8 1 0.9263 -1.9394 -1.2516 9 6 2.2121 -3.3436 -2.2167 10 7 3.1826 -4.2177 -2.0630 11 14 1.4957 -3.0320 -3.9135 12 1 2.2506 -1.9384 -4.5763 13 1 1.5981 -4.2690 -4.7288 14 1 0.0690 -2.6412 -3.7843 15 6 1.6733 -2.7147 2.5737 16 6 0.7056 -2.0109 3.5271 17 7 0.8090 -2.6116 4.8593 18 6 1.7335 -2.1555 5.9039 19 6 1.8076 -3.3121 6.9251 20 6 0.4486 -4.0157 6.7039 21 6 0.0699 -3.6533 5.2848 22 8 -0.7765 -4.2190 4.6256 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6627 -0.2173 2.1391 31 1 3.1298 -0.7064 1.2579 32 1 3.3533 -2.6212 0.2518 33 1 2.2119 -3.9666 0.4873 34 1 3.5262 -4.7010 -2.8307 35 1 2.6927 -2.6040 2.9437 36 1 1.4208 -3.7734 2.5159 37 1 -0.3137 -2.1215 3.1572 38 1 0.9581 -0.9521 3.5850 39 1 1.3480 -1.2547 6.3816 40 1 2.7186 -1.9641 5.4784 41 1 2.6359 -3.9825 6.6958 42 1 1.8877 -2.9295 7.9427 43 1 0.5571 -5.0956 6.8057 44 1 -0.2952 -3.6382 7.4055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000685995757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:45 Heat of formation + Delta-G solvation = -37.771450 kcal Electronic energy + Delta-G solvation = -21463.645903 eV Core-core repulsion = 18415.711513 eV Total energy + Delta-G solvation = -3047.934389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27152 -37.66674 -36.29532 -34.15979 -32.98983 -32.06193 -28.57219 -27.61339 -26.73165 -26.45024 -24.88521 -22.49383 -21.88585 -20.63990 -19.28954 -18.96864 -16.77710 -16.58653 -16.23746 -15.39006 -14.97913 -14.62315 -14.26647 -13.98918 -13.76655 -13.37373 -13.29816 -13.08356 -12.87052 -12.43497 -12.36339 -12.20357 -11.82286 -11.69579 -11.62639 -11.22941 -11.14535 -11.04935 -10.81154 -10.54503 -10.50451 -10.20696 -10.10368 -9.91846 -9.66131 -9.44122 -9.04350 -8.57315 -8.35064 -7.24394 -5.97684 -3.96517 2.66961 3.07147 3.34439 3.41299 3.45780 4.28554 4.33817 4.46129 4.64242 4.90427 4.99158 5.24389 5.29785 5.35235 5.36921 5.50188 5.55497 5.61977 5.65592 5.70998 5.79509 5.81428 5.98099 6.06303 6.15335 6.23954 6.32624 6.35357 6.43107 6.52983 6.68147 6.70406 6.80780 7.18842 7.21880 7.27005 7.31676 7.41997 7.89965 8.15163 8.23041 8.28556 8.57224 9.10227 9.65566 11.12986 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.004911 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.467950 B = 5700.288424 C = 6395.106369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.073 3.927 5 N -0.531 5.531 6 C 0.194 3.806 7 C -0.502 4.502 8 H 0.078 0.922 9 C 0.053 3.947 10 N -0.900 5.900 11 Si 0.892 3.108 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.272 1.272 15 C 0.045 3.955 16 C 0.129 3.871 17 N -0.618 5.618 18 C 0.101 3.899 19 C -0.132 4.132 20 C -0.155 4.155 21 C 0.512 3.488 22 O -0.527 6.527 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.075 0.925 26 H 0.112 0.888 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.021 0.979 32 H -0.008 1.008 33 H 0.027 0.973 34 H 0.260 0.740 35 H 0.020 0.980 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.012 7.090 16.820 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.126 4.126 3 C -0.201 4.201 4 C -0.055 4.055 5 N -0.255 5.255 6 C 0.069 3.931 7 C -0.540 4.540 8 H 0.096 0.904 9 C -0.148 4.148 10 N -0.540 5.540 11 Si 0.720 3.280 12 H -0.208 1.208 13 H -0.214 1.214 14 H -0.197 1.197 15 C -0.084 4.084 16 C 0.007 3.993 17 N -0.353 5.353 18 C -0.023 4.023 19 C -0.170 4.170 20 C -0.195 4.195 21 C 0.299 3.701 22 O -0.403 6.403 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.094 0.906 26 H 0.130 0.870 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.039 0.961 32 H 0.009 0.991 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.118 0.882 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.858 6.693 16.151 17.581 hybrid contribution 0.774 0.117 -0.709 1.056 sum -1.084 6.809 15.442 16.912 Atomic orbital electron populations 1.21663 0.95580 1.02716 0.98785 1.21449 0.96134 0.93912 1.01131 1.21836 1.00349 0.97459 1.00466 1.22036 0.96306 0.90018 0.97149 1.62054 1.58101 1.01786 1.03590 1.19790 0.91037 0.92505 0.89747 1.21416 1.19090 1.22624 0.90909 0.90381 1.25009 0.95290 0.95260 0.99218 1.69963 1.27188 1.26306 1.30582 0.86582 0.79698 0.77512 0.84204 1.20798 1.21389 1.19658 1.22335 0.96102 0.99557 0.90434 1.21508 1.01994 0.96329 0.79425 1.48388 1.39254 1.33615 1.14078 1.22059 0.94304 0.97267 0.88660 1.22590 0.97344 0.97343 0.99703 1.22326 0.98503 1.03226 0.95471 1.20965 0.80765 0.79548 0.88827 1.90756 1.33012 1.54659 1.61888 0.94820 0.94567 0.90601 0.87008 0.93483 0.93267 0.93986 0.93256 0.96070 0.99059 0.95535 0.93072 0.96223 0.91031 0.89216 0.90657 0.91243 0.90423 0.89957 0.89342 0.88191 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 8.40 37.15 0.31 -2.00 16 2 C -0.11 -1.99 2.40 -90.62 -0.22 -2.21 16 3 C -0.14 -2.18 9.19 37.16 0.34 -1.83 16 4 C 0.07 1.35 4.27 -3.82 -0.02 1.33 16 5 N -0.53 -11.16 3.71 -236.07 -0.88 -12.04 16 6 C 0.19 5.01 4.78 -4.98 -0.02 4.98 16 7 C -0.50 -13.68 7.24 -34.44 -0.25 -13.93 16 8 H 0.08 2.06 4.58 -52.49 -0.24 1.82 16 9 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 10 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 11 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.05 0.84 5.25 -3.82 -0.02 0.82 16 16 C 0.13 1.98 5.91 -4.04 -0.02 1.96 16 17 N -0.62 -8.22 2.94 -172.36 -0.51 -8.73 16 18 C 0.10 0.89 7.34 -3.12 -0.02 0.87 16 19 C -0.13 -0.92 7.18 -25.10 -0.18 -1.10 16 20 C -0.15 -1.43 6.86 -26.74 -0.18 -1.62 16 21 C 0.51 7.51 8.03 -10.77 -0.09 7.42 16 22 O -0.53 -10.33 17.60 5.55 0.10 -10.23 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.54 6.74 -51.93 -0.35 1.19 16 26 H 0.11 2.48 5.14 -51.93 -0.27 2.21 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.79 5.91 -51.93 -0.31 0.48 16 31 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 32 H -0.01 -0.23 7.67 -51.93 -0.40 -0.63 16 33 H 0.03 0.75 7.65 -51.93 -0.40 0.35 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 36 H 0.07 1.49 7.80 -51.93 -0.41 1.09 16 37 H 0.09 1.56 7.93 -51.93 -0.41 1.15 16 38 H 0.08 1.02 6.27 -51.93 -0.33 0.69 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -32.09 344.11 -8.56 -40.65 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.71 Total: -1.52 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.47 Total: -3.91 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.65 Total: -46.85 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.10 Total: -10.23 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.09 -8.56 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.883 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds