Wall clock time and date at job start Mon Mar 30 2020 01:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 C 1.53001 * 109.47293 * 119.99794 * 2 1 3 5 5 N 1.46904 * 109.46809 * 60.95581 * 4 2 1 6 6 C 1.46893 * 110.99873 * 73.45144 * 5 4 2 7 7 C 1.50701 * 109.47438 * 279.61906 * 6 5 4 8 8 H 1.07999 * 119.99438 * 2.95279 * 7 6 5 9 9 C 1.37870 * 120.00295 * 182.93964 * 7 6 5 10 10 N 1.31515 * 119.99988 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00077 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47078 * 90.00588 * 11 9 7 13 13 H 1.48503 * 109.47152 * 210.00812 * 11 9 7 14 14 H 1.48496 * 109.46985 * 330.00284 * 11 9 7 15 15 C 1.46903 * 110.99623 * 197.40745 * 5 4 2 16 16 C 1.52998 * 109.47412 * 66.04482 * 15 5 4 17 17 N 1.46501 * 109.47047 * 179.97438 * 16 15 5 18 18 C 1.46762 * 124.35008 * 90.00009 * 17 16 15 19 19 C 1.54477 * 105.54815 * 197.07398 * 18 17 16 20 20 C 1.54622 * 101.76868 * 334.54003 * 19 18 17 21 21 C 1.34625 * 124.46790 * 270.02232 * 17 16 15 22 22 O 1.21284 * 124.90849 * 359.55976 * 21 17 16 23 23 H 1.08998 * 109.47222 * 300.00082 * 1 2 3 24 24 H 1.09005 * 109.47403 * 60.00112 * 1 2 3 25 25 H 1.09003 * 109.47064 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47222 * 239.99918 * 2 1 3 27 27 H 1.09004 * 109.46885 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47193 * 299.99286 * 3 2 1 29 29 H 1.08998 * 109.47161 * 59.99880 * 3 2 1 30 30 H 1.09000 * 109.46865 * 300.95551 * 4 2 1 31 31 H 1.08997 * 109.47543 * 180.95526 * 4 2 1 32 32 H 1.08997 * 109.47380 * 39.62514 * 6 5 4 33 33 H 1.09006 * 109.46718 * 159.62402 * 6 5 4 34 34 H 0.97002 * 120.00251 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.47145 * 306.04231 * 15 5 4 36 36 H 1.08997 * 109.46981 * 186.04711 * 15 5 4 37 37 H 1.09000 * 109.47171 * 59.99765 * 16 15 5 38 38 H 1.08997 * 109.47235 * 300.00073 * 16 15 5 39 39 H 1.09005 * 110.24367 * 78.03347 * 18 17 16 40 40 H 1.08998 * 110.24504 * 316.12534 * 18 17 16 41 41 H 1.09000 * 110.96893 * 92.66522 * 19 18 17 42 42 H 1.09003 * 110.96688 * 216.42000 * 19 18 17 43 43 H 1.09003 * 110.48626 * 143.46882 * 20 19 18 44 44 H 1.09000 * 110.49243 * 266.12056 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5692 -2.1127 1.2378 6 6 2.3017 -2.9080 0.2434 7 6 1.7234 -2.6571 -1.1254 8 1 0.9263 -1.9394 -1.2516 9 6 2.2121 -3.3436 -2.2167 10 7 3.1826 -4.2177 -2.0630 11 14 1.4957 -3.0320 -3.9135 12 1 2.2506 -1.9384 -4.5763 13 1 1.5981 -4.2690 -4.7288 14 1 0.0690 -2.6412 -3.7843 15 6 1.6733 -2.7147 2.5737 16 6 0.7056 -2.0109 3.5271 17 7 0.8090 -2.6116 4.8593 18 6 1.7335 -2.1555 5.9039 19 6 1.8076 -3.3121 6.9251 20 6 0.4486 -4.0157 6.7039 21 6 0.0699 -3.6533 5.2848 22 8 -0.7765 -4.2190 4.6256 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6627 -0.2173 2.1391 31 1 3.1298 -0.7064 1.2579 32 1 3.3533 -2.6212 0.2518 33 1 2.2119 -3.9666 0.4873 34 1 3.5262 -4.7010 -2.8307 35 1 2.6927 -2.6040 2.9437 36 1 1.4208 -3.7734 2.5159 37 1 -0.3137 -2.1215 3.1572 38 1 0.9581 -0.9521 3.5850 39 1 1.3480 -1.2547 6.3816 40 1 2.7186 -1.9641 5.4784 41 1 2.6359 -3.9825 6.6958 42 1 1.8877 -2.9295 7.9427 43 1 0.5571 -5.0956 6.8057 44 1 -0.2952 -3.6382 7.4055 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685995757.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:44 Heat of formation + Delta-G solvation = -58.753479 kcal Electronic energy + Delta-G solvation = -21464.555752 eV Core-core repulsion = 18415.711513 eV Total energy + Delta-G solvation = -3048.844238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.32224 -39.29450 -37.44718 -35.51435 -34.89892 -33.48126 -30.16440 -28.46365 -28.39114 -27.78778 -26.48739 -24.18099 -22.70788 -22.27178 -20.64400 -20.29331 -18.47661 -17.86871 -17.39327 -16.66984 -16.56991 -16.38263 -15.69256 -15.53649 -14.79044 -14.71393 -14.54636 -14.17473 -14.15637 -14.07774 -13.92015 -13.38910 -13.27717 -13.00087 -12.92507 -12.68121 -12.61062 -12.39950 -12.32485 -12.11407 -11.87766 -11.77374 -11.63581 -11.44323 -11.29374 -10.90676 -10.81736 -10.51810 -9.72475 -9.01025 -8.15677 -6.21447 1.39747 1.41584 1.52424 1.55148 2.03221 2.42149 3.15275 3.35150 3.45088 3.66159 3.91406 4.04870 4.10767 4.15692 4.26510 4.33792 4.37426 4.56027 4.63277 4.70277 4.73940 4.75193 4.85089 4.90396 4.92258 4.96325 5.06202 5.10460 5.13150 5.14561 5.22165 5.24621 5.31442 5.45608 5.57910 5.65711 5.82353 5.86883 6.11268 6.18821 6.42544 6.61566 6.92946 7.16016 7.45073 8.95406 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.004911 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.467950 B = 5700.288424 C = 6395.106369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C -0.135 4.135 4 C 0.075 3.925 5 N -0.536 5.536 6 C 0.211 3.789 7 C -0.505 4.505 8 H 0.086 0.914 9 C -0.004 4.004 10 N -0.941 5.941 11 Si 0.960 3.040 12 H -0.270 1.270 13 H -0.288 1.288 14 H -0.264 1.264 15 C 0.052 3.948 16 C 0.142 3.858 17 N -0.621 5.621 18 C 0.092 3.908 19 C -0.119 4.119 20 C -0.145 4.145 21 C 0.493 3.507 22 O -0.592 6.592 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.012 0.988 32 H -0.035 1.035 33 H -0.013 1.013 34 H 0.260 0.740 35 H 0.029 0.971 36 H 0.034 0.966 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.104 0.896 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 9.774 18.749 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.129 4.129 3 C -0.193 4.193 4 C -0.053 4.053 5 N -0.261 5.261 6 C 0.085 3.915 7 C -0.543 4.543 8 H 0.104 0.896 9 C -0.201 4.201 10 N -0.583 5.583 11 Si 0.785 3.215 12 H -0.196 1.196 13 H -0.214 1.214 14 H -0.188 1.188 15 C -0.077 4.077 16 C 0.019 3.981 17 N -0.354 5.354 18 C -0.029 4.029 19 C -0.157 4.157 20 C -0.185 4.185 21 C 0.283 3.717 22 O -0.473 6.473 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.030 0.970 32 H -0.017 1.017 33 H 0.005 0.995 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.145 0.855 43 H 0.122 0.878 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.005 9.418 18.125 20.524 hybrid contribution 0.853 -0.705 -1.236 1.659 sum -1.152 8.713 16.889 19.039 Atomic orbital electron populations 1.21570 0.94895 1.01062 1.00545 1.21378 0.96701 0.95811 0.99026 1.21743 1.00339 0.94975 1.02196 1.22131 0.95863 0.88307 0.98969 1.61976 1.57269 1.02855 1.03959 1.19413 0.90007 0.90956 0.91122 1.21760 1.18812 1.22207 0.91549 0.89634 1.25901 0.95692 0.95080 1.03391 1.70106 1.28835 1.27620 1.31703 0.85517 0.79243 0.77510 0.79263 1.19590 1.21354 1.18839 1.22272 0.97548 0.97843 0.90058 1.21199 0.99386 0.97392 0.80079 1.48579 1.39734 1.33202 1.13911 1.22442 0.93609 0.99016 0.87869 1.22653 0.95617 0.96248 1.01143 1.22366 1.00483 1.03909 0.91749 1.22073 0.79813 0.79027 0.90816 1.90710 1.35870 1.56651 1.64058 0.92210 0.93633 0.93909 0.91269 0.93492 0.92429 0.91361 0.89597 0.97005 1.01722 0.99459 0.93080 0.95296 0.94759 0.91762 0.87728 0.88462 0.89876 0.90001 0.85502 0.87799 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 8.40 71.98 0.60 -3.58 16 2 C -0.11 -3.96 2.40 -10.79 -0.03 -3.99 16 3 C -0.13 -3.71 9.19 71.98 0.66 -3.05 16 4 C 0.07 2.70 4.27 86.30 0.37 3.06 16 5 N -0.54 -23.27 3.71 -900.80 -3.34 -26.61 16 6 C 0.21 11.55 4.78 85.56 0.41 11.95 16 7 C -0.51 -28.59 7.24 25.60 0.19 -28.41 16 8 H 0.09 4.64 4.58 -2.91 -0.01 4.63 16 9 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 10 N -0.94 -58.27 13.29 21.44 0.28 -57.99 16 11 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 15 C 0.05 2.00 5.25 86.30 0.45 2.45 16 16 C 0.14 4.29 5.91 86.38 0.51 4.80 16 17 N -0.62 -15.79 2.94 -817.69 -2.40 -18.19 16 18 C 0.09 1.32 7.34 86.83 0.64 1.95 16 19 C -0.12 -1.21 7.18 31.65 0.23 -0.99 16 20 C -0.15 -2.35 6.86 30.59 0.21 -2.14 16 21 C 0.49 14.43 8.03 87.87 0.71 15.14 16 22 O -0.59 -24.37 17.60 -3.04 -0.05 -24.42 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 24 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.04 1.72 6.74 -2.39 -0.02 1.71 16 26 H 0.07 3.10 5.14 -2.39 -0.01 3.09 16 27 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 2.46 5.91 -2.39 -0.01 2.45 16 31 H 0.01 0.45 7.74 -2.39 -0.02 0.43 16 32 H -0.03 -2.05 7.67 -2.39 -0.02 -2.06 16 33 H -0.01 -0.78 7.65 -2.38 -0.02 -0.80 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.03 1.04 8.12 -2.39 -0.02 1.02 16 36 H 0.03 1.54 7.80 -2.39 -0.02 1.52 16 37 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 38 H 0.10 2.52 6.27 -2.39 -0.01 2.50 16 39 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -75.97 344.11 2.88 -73.09 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.95 Total: 9.26 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.41 Total: -2.55 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -5.46 Total: -102.78 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.97 2.88 -73.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685995757.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.336 kcal (2) G-P(sol) polarization free energy of solvation -75.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds