Wall clock time and date at job start Mon Mar 30 2020 01:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.46961 * 2 1 4 4 C 1.53004 * 109.46642 * 119.99376 * 2 1 3 5 5 N 1.46506 * 109.46917 * 174.36741 * 4 2 1 6 6 C 1.46497 * 119.99962 * 276.31085 * 5 4 2 7 7 C 1.50700 * 109.47122 * 269.99929 * 6 5 4 8 8 H 1.08007 * 119.99842 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00157 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00140 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99925 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46961 * 89.99886 * 11 9 7 13 13 H 1.48495 * 109.46963 * 209.99737 * 11 9 7 14 14 H 1.48501 * 109.47084 * 330.00409 * 11 9 7 15 15 C 1.34780 * 119.99574 * 96.31138 * 5 4 2 16 16 O 1.21282 * 119.99491 * 185.36770 * 15 5 4 17 17 C 1.50696 * 120.00155 * 5.36565 * 15 5 4 18 18 H 1.08996 * 110.33693 * 322.71715 * 17 15 5 19 19 C 1.54912 * 110.37345 * 84.97389 * 17 15 5 20 20 C 1.55427 * 101.52018 * 155.94964 * 19 17 15 21 21 C 1.54322 * 103.04633 * 324.36368 * 20 19 17 22 22 N 1.47439 * 107.23244 * 22.28382 * 21 20 19 23 23 C 1.46907 * 110.99668 * 123.25867 * 22 21 20 24 24 H 1.08998 * 109.47694 * 300.00530 * 1 2 3 25 25 H 1.09003 * 109.46715 * 60.00859 * 1 2 3 26 26 H 1.09002 * 109.47366 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47361 * 239.99068 * 2 1 3 28 28 H 1.09003 * 109.47220 * 295.86909 * 3 2 1 29 29 H 1.09000 * 109.47602 * 55.87150 * 3 2 1 30 30 H 1.08999 * 109.47126 * 175.87353 * 3 2 1 31 31 H 1.09002 * 109.47553 * 54.36854 * 4 2 1 32 32 H 1.09006 * 109.47482 * 294.36872 * 4 2 1 33 33 H 1.08994 * 109.47539 * 29.99835 * 6 5 4 34 34 H 1.08996 * 109.46938 * 150.00432 * 6 5 4 35 35 H 0.96997 * 120.00422 * 179.97438 * 10 9 7 36 36 H 1.08995 * 110.99012 * 274.10050 * 19 17 15 37 37 H 1.09004 * 110.98974 * 37.91736 * 19 17 15 38 38 H 1.09006 * 110.69393 * 205.97288 * 20 19 17 39 39 H 1.08999 * 110.84435 * 82.82714 * 20 19 17 40 40 H 1.09001 * 109.88696 * 262.87741 * 21 20 19 41 41 H 1.08994 * 110.02192 * 141.76941 * 21 20 19 42 42 H 1.09001 * 109.46605 * 299.15516 * 23 22 21 43 43 H 1.08995 * 109.47191 * 59.15470 * 23 22 21 44 44 H 1.09002 * 109.46836 * 179.16217 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.4986 -0.8397 1.1836 6 6 4.1111 -1.9407 0.4361 7 6 4.3087 -3.1210 1.3520 8 1 4.0085 -3.0572 2.3876 9 6 4.8737 -4.2820 0.8684 10 7 5.0466 -5.3119 1.6678 11 14 5.3935 -4.3922 -0.9224 12 1 6.8029 -3.9440 -1.0572 13 1 5.2744 -5.7976 -1.3868 14 1 4.5166 -3.5223 -1.7468 15 6 4.2771 0.0642 1.8108 16 8 5.4818 0.0238 1.6768 17 6 3.6506 1.1251 2.6786 18 1 2.7137 1.4686 2.2402 19 6 3.4089 0.5792 4.1081 20 6 3.3888 1.8907 4.9419 21 6 4.4407 2.7700 4.2336 22 7 4.5816 2.2595 2.8576 23 6 4.3170 3.3180 1.8738 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8898 28 1 1.7383 1.9345 -0.9247 29 1 1.6174 1.9773 0.8507 30 1 3.1274 1.4434 0.0739 31 1 1.5965 -1.7156 1.3014 32 1 1.7612 -0.1523 2.1365 33 1 3.4591 -2.2266 -0.3892 34 1 5.0759 -1.6205 0.0429 35 1 5.4437 -6.1288 1.3275 36 1 2.4530 0.0594 4.1710 37 1 4.2263 -0.0705 4.4213 38 1 3.6813 1.6956 5.9738 39 1 2.4056 2.3596 4.9036 40 1 5.3952 2.6990 4.7551 41 1 4.1064 3.8072 4.2119 42 1 3.2964 3.6806 1.9961 43 1 5.0157 4.1402 2.0279 44 1 4.4424 2.9182 0.8675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733870502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:31 Heat of formation + Delta-G solvation = -31.403649 kcal Electronic energy + Delta-G solvation = -22384.592879 eV Core-core repulsion = 19336.934619 eV Total energy + Delta-G solvation = -3047.658261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01802 -37.79467 -36.23586 -33.65223 -32.31561 -31.93023 -29.82301 -27.80022 -27.12672 -25.69365 -25.48486 -23.02760 -21.22413 -20.74400 -20.26793 -18.06405 -17.10442 -16.83994 -15.91116 -15.25029 -15.00196 -14.59740 -14.42641 -14.05751 -13.71484 -13.44209 -13.36109 -12.88110 -12.63171 -12.58304 -12.33502 -12.15018 -12.00939 -11.77262 -11.59680 -11.35164 -11.25276 -11.11019 -10.94567 -10.89680 -10.71616 -10.66174 -10.45494 -10.39179 -10.08133 -9.48557 -8.90408 -8.55024 -8.07235 -7.59041 -6.05274 -4.03341 3.31814 3.37743 3.40025 3.41414 3.65578 4.29596 4.43227 4.63582 4.78115 4.93879 4.98768 5.05111 5.11955 5.24741 5.28398 5.36970 5.40556 5.40850 5.54265 5.60246 5.63606 5.71203 5.77269 5.82246 5.85196 5.86912 5.95875 6.02196 6.10091 6.13454 6.21320 6.31580 6.38728 6.46781 6.73973 6.95595 7.06961 7.13151 7.46373 7.66418 8.37346 8.52170 8.97826 9.15220 9.56010 11.08155 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.006832 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.415023 B = 4097.496842 C = 4793.230718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.149 4.149 4 C 0.115 3.885 5 N -0.595 5.595 6 C 0.218 3.782 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.898 5.898 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.520 3.480 16 O -0.520 6.520 17 C 0.047 3.953 18 H 0.078 0.922 19 C -0.117 4.117 20 C -0.140 4.140 21 C 0.045 3.955 22 N -0.511 5.511 23 C 0.024 3.976 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.023 0.977 43 H 0.068 0.932 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.859 16.316 1.124 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.138 4.138 3 C -0.206 4.206 4 C -0.010 4.010 5 N -0.327 5.327 6 C 0.097 3.903 7 C -0.565 4.565 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.306 3.694 16 O -0.394 6.394 17 C -0.065 4.065 18 H 0.096 0.904 19 C -0.155 4.155 20 C -0.179 4.179 21 C -0.083 4.083 22 N -0.235 5.235 23 C -0.125 4.125 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.595 15.935 0.959 18.131 hybrid contribution -0.575 0.020 -0.803 0.988 sum -9.170 15.955 0.157 18.403 Atomic orbital electron populations 1.21758 0.94879 1.01969 1.01392 1.21583 0.95551 0.96486 1.00181 1.22000 1.01550 0.96088 1.00976 1.21570 0.81659 1.01264 0.96499 1.47865 1.05226 1.27586 1.52048 1.19595 0.93968 0.84755 0.91993 1.21354 1.41134 0.95855 0.98181 0.90763 1.24846 0.95030 0.95524 0.97586 1.69896 1.44499 1.03876 1.35446 0.86868 0.79955 0.77310 0.85678 1.19924 1.21133 1.19086 1.19989 0.87244 0.81971 0.80221 1.90649 1.14339 1.72914 1.61531 1.22799 0.94548 0.92183 0.96962 0.90395 1.22698 1.03193 0.97438 0.92183 1.22831 0.99076 0.95904 1.00039 1.22833 0.99350 0.97022 0.89085 1.63067 1.51075 1.06742 1.02664 1.22556 0.98659 0.94406 0.96860 0.92869 0.92819 0.92301 0.90540 0.92886 0.93088 0.92342 0.89937 0.91406 0.95432 0.94619 0.92631 0.90160 0.89616 0.90412 0.91523 0.90319 0.92784 0.95826 0.91332 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.19 37.16 0.34 -1.15 16 2 C -0.12 -1.58 3.11 -90.62 -0.28 -1.86 16 3 C -0.15 -1.84 7.79 37.15 0.29 -1.55 16 4 C 0.11 1.83 4.86 -4.04 -0.02 1.81 16 5 N -0.60 -12.36 2.24 -175.06 -0.39 -12.76 16 6 C 0.22 5.40 4.29 -5.20 -0.02 5.38 16 7 C -0.53 -15.24 9.94 -34.44 -0.34 -15.58 16 8 H 0.07 2.34 8.06 -52.48 -0.42 1.92 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -27.91 13.96 55.43 0.77 -27.13 16 11 Si 0.87 21.93 27.47 -169.99 -4.67 17.26 16 12 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 15 C 0.52 11.00 5.56 -10.99 -0.06 10.94 16 16 O -0.52 -13.50 16.16 5.56 0.09 -13.41 16 17 C 0.05 0.74 1.43 -67.34 -0.10 0.65 16 18 H 0.08 1.08 3.63 -51.93 -0.19 0.89 16 19 C -0.12 -1.69 6.32 -24.43 -0.15 -1.85 16 20 C -0.14 -1.56 6.95 -24.75 -0.17 -1.73 16 21 C 0.04 0.55 6.90 -2.84 -0.02 0.53 16 22 N -0.51 -7.89 4.71 -232.98 -1.10 -8.98 16 23 C 0.02 0.30 9.10 60.07 0.55 0.85 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.55 6.88 -51.93 -0.36 0.20 16 30 H 0.06 0.86 5.14 -51.93 -0.27 0.60 16 31 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 32 H 0.07 0.93 5.28 -51.93 -0.27 0.66 16 33 H 0.03 0.65 7.03 -51.93 -0.37 0.29 16 34 H 0.04 0.96 6.78 -51.93 -0.35 0.61 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 36 H 0.08 1.04 7.47 -51.93 -0.39 0.65 16 37 H 0.09 1.48 8.05 -51.93 -0.42 1.06 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.54 7.58 -51.93 -0.39 0.15 16 42 H 0.02 0.25 8.09 -51.93 -0.42 -0.17 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.95 7.13 -51.93 -0.37 0.58 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -34.23 336.95 -7.91 -42.14 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.61 Total: -0.63 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -0.09 Total: -1.56 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.72 Total: -48.87 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.67 Total: 17.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.23 -7.91 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733870502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.736 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds