Wall clock time and date at job start Mon Mar 30 2020 01:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.46961 * 2 1 4 4 C 1.53004 * 109.46642 * 119.99376 * 2 1 3 5 5 N 1.46506 * 109.46917 * 174.36741 * 4 2 1 6 6 C 1.46497 * 119.99962 * 276.31085 * 5 4 2 7 7 C 1.50700 * 109.47122 * 269.99929 * 6 5 4 8 8 H 1.08007 * 119.99842 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00157 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00140 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99925 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46961 * 89.99886 * 11 9 7 13 13 H 1.48495 * 109.46963 * 209.99737 * 11 9 7 14 14 H 1.48501 * 109.47084 * 330.00409 * 11 9 7 15 15 C 1.34780 * 119.99574 * 96.31138 * 5 4 2 16 16 O 1.21282 * 119.99491 * 185.36770 * 15 5 4 17 17 C 1.50696 * 120.00155 * 5.36565 * 15 5 4 18 18 H 1.08996 * 110.33693 * 322.71715 * 17 15 5 19 19 C 1.54912 * 110.37345 * 84.97389 * 17 15 5 20 20 C 1.55427 * 101.52018 * 155.94964 * 19 17 15 21 21 C 1.54322 * 103.04633 * 324.36368 * 20 19 17 22 22 N 1.47439 * 107.23244 * 22.28382 * 21 20 19 23 23 C 1.46907 * 110.99668 * 123.25867 * 22 21 20 24 24 H 1.08998 * 109.47694 * 300.00530 * 1 2 3 25 25 H 1.09003 * 109.46715 * 60.00859 * 1 2 3 26 26 H 1.09002 * 109.47366 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47361 * 239.99068 * 2 1 3 28 28 H 1.09003 * 109.47220 * 295.86909 * 3 2 1 29 29 H 1.09000 * 109.47602 * 55.87150 * 3 2 1 30 30 H 1.08999 * 109.47126 * 175.87353 * 3 2 1 31 31 H 1.09002 * 109.47553 * 54.36854 * 4 2 1 32 32 H 1.09006 * 109.47482 * 294.36872 * 4 2 1 33 33 H 1.08994 * 109.47539 * 29.99835 * 6 5 4 34 34 H 1.08996 * 109.46938 * 150.00432 * 6 5 4 35 35 H 0.96997 * 120.00422 * 179.97438 * 10 9 7 36 36 H 1.08995 * 110.99012 * 274.10050 * 19 17 15 37 37 H 1.09004 * 110.98974 * 37.91736 * 19 17 15 38 38 H 1.09006 * 110.69393 * 205.97288 * 20 19 17 39 39 H 1.08999 * 110.84435 * 82.82714 * 20 19 17 40 40 H 1.09001 * 109.88696 * 262.87741 * 21 20 19 41 41 H 1.08994 * 110.02192 * 141.76941 * 21 20 19 42 42 H 1.09001 * 109.46605 * 299.15516 * 23 22 21 43 43 H 1.08995 * 109.47191 * 59.15470 * 23 22 21 44 44 H 1.09002 * 109.46836 * 179.16217 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.4986 -0.8397 1.1836 6 6 4.1111 -1.9407 0.4361 7 6 4.3087 -3.1210 1.3520 8 1 4.0085 -3.0572 2.3876 9 6 4.8737 -4.2820 0.8684 10 7 5.0466 -5.3119 1.6678 11 14 5.3935 -4.3922 -0.9224 12 1 6.8029 -3.9440 -1.0572 13 1 5.2744 -5.7976 -1.3868 14 1 4.5166 -3.5223 -1.7468 15 6 4.2771 0.0642 1.8108 16 8 5.4818 0.0238 1.6768 17 6 3.6506 1.1251 2.6786 18 1 2.7137 1.4686 2.2402 19 6 3.4089 0.5792 4.1081 20 6 3.3888 1.8907 4.9419 21 6 4.4407 2.7700 4.2336 22 7 4.5816 2.2595 2.8576 23 6 4.3170 3.3180 1.8738 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8898 28 1 1.7383 1.9345 -0.9247 29 1 1.6174 1.9773 0.8507 30 1 3.1274 1.4434 0.0739 31 1 1.5965 -1.7156 1.3014 32 1 1.7612 -0.1523 2.1365 33 1 3.4591 -2.2266 -0.3892 34 1 5.0759 -1.6205 0.0429 35 1 5.4437 -6.1288 1.3275 36 1 2.4530 0.0594 4.1710 37 1 4.2263 -0.0705 4.4213 38 1 3.6813 1.6956 5.9738 39 1 2.4056 2.3596 4.9036 40 1 5.3952 2.6990 4.7551 41 1 4.1064 3.8072 4.2119 42 1 3.2964 3.6806 1.9961 43 1 5.0157 4.1402 2.0279 44 1 4.4424 2.9182 0.8675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733870502.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:30 Heat of formation + Delta-G solvation = -55.563590 kcal Electronic energy + Delta-G solvation = -22385.640533 eV Core-core repulsion = 19336.934619 eV Total energy + Delta-G solvation = -3048.705914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.42811 -39.08082 -37.68560 -35.43017 -34.20474 -33.03974 -31.28299 -29.51663 -28.05322 -26.97031 -26.58134 -24.86451 -22.54537 -21.92351 -21.40925 -19.56594 -19.06613 -18.48747 -17.29532 -16.66199 -16.45890 -15.94893 -15.84203 -15.55173 -14.96091 -14.62190 -14.57184 -14.35181 -14.21701 -13.90324 -13.66932 -13.50482 -13.25889 -12.98294 -12.83118 -12.77437 -12.58173 -12.42968 -12.31716 -12.14566 -12.08850 -11.88983 -11.80506 -11.71089 -11.65169 -11.48903 -10.84588 -10.55033 -9.36158 -9.16006 -8.35514 -6.39847 1.29160 1.33756 1.41862 1.82297 2.19362 2.28917 2.98441 3.10078 3.52073 3.70223 3.84189 3.94404 3.96602 4.06687 4.12954 4.28423 4.42402 4.45539 4.47060 4.55742 4.66253 4.74228 4.76024 4.81683 4.85105 4.90821 4.93207 4.93665 4.97249 5.03482 5.07027 5.10010 5.26932 5.29039 5.39649 5.45406 5.48226 5.66700 5.91425 6.15776 6.25325 6.61014 6.76892 7.21392 7.51365 8.81338 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.006832 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.415023 B = 4097.496842 C = 4793.230718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 C -0.145 4.145 4 C 0.108 3.892 5 N -0.600 5.600 6 C 0.228 3.772 7 C -0.534 4.534 8 H 0.031 0.969 9 C 0.013 3.987 10 N -0.943 5.943 11 Si 0.944 3.056 12 H -0.278 1.278 13 H -0.271 1.271 14 H -0.241 1.241 15 C 0.511 3.489 16 O -0.583 6.583 17 C 0.061 3.939 18 H 0.107 0.893 19 C -0.123 4.123 20 C -0.125 4.125 21 C 0.043 3.957 22 N -0.549 5.549 23 C 0.025 3.975 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.012 0.988 35 H 0.268 0.732 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 18.847 0.435 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.133 4.133 3 C -0.202 4.202 4 C -0.014 4.014 5 N -0.330 5.330 6 C 0.106 3.894 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.185 4.185 10 N -0.583 5.583 11 Si 0.767 3.233 12 H -0.204 1.204 13 H -0.196 1.196 14 H -0.164 1.164 15 C 0.300 3.700 16 O -0.462 6.462 17 C -0.051 4.051 18 H 0.124 0.876 19 C -0.162 4.162 20 C -0.163 4.163 21 C -0.084 4.084 22 N -0.274 5.274 23 C -0.122 4.122 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.063 0.937 34 H 0.030 0.970 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.184 18.494 0.280 21.614 hybrid contribution 0.233 -0.779 -0.496 0.952 sum -10.951 17.715 -0.216 20.828 Atomic orbital electron populations 1.21716 0.92060 1.02404 1.03141 1.21530 0.97726 0.96583 0.97501 1.21963 0.99687 0.95565 1.02961 1.21892 0.78515 1.01656 0.99378 1.47951 1.07436 1.26319 1.51344 1.19209 0.93661 0.84597 0.91942 1.21562 1.41039 0.97731 0.96958 0.95082 1.25796 0.94878 0.94974 1.02824 1.70038 1.45633 1.04705 1.37948 0.85776 0.79404 0.78374 0.79791 1.20424 1.19619 1.16418 1.21078 0.86685 0.82598 0.79689 1.90599 1.17138 1.74803 1.63655 1.22667 0.95004 0.91038 0.96359 0.87577 1.22743 1.02335 0.98966 0.92152 1.22822 1.00449 0.93328 0.99747 1.22899 0.99446 0.98807 0.87246 1.62894 1.51983 1.07661 1.04865 1.22568 1.00737 0.93800 0.95140 0.90954 0.91224 0.92614 0.92574 0.91089 0.90862 0.95206 0.91167 0.88757 0.93732 0.96983 0.92255 0.88561 0.93774 0.89222 0.88304 0.91520 0.89653 0.92933 0.90073 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.19 71.98 0.66 -1.70 16 2 C -0.11 -2.80 3.11 -10.80 -0.03 -2.83 16 3 C -0.14 -3.16 7.79 71.98 0.56 -2.60 16 4 C 0.11 3.35 4.86 86.38 0.42 3.77 16 5 N -0.60 -25.50 2.24 -826.14 -1.85 -27.35 16 6 C 0.23 11.69 4.29 85.63 0.37 12.05 16 7 C -0.53 -32.38 9.94 25.60 0.25 -32.12 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 9 C 0.01 0.81 5.47 84.65 0.46 1.28 16 10 N -0.94 -60.64 13.96 21.45 0.30 -60.34 16 11 Si 0.94 45.96 27.47 68.60 1.88 47.85 16 12 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 14 H -0.24 -10.65 6.54 99.48 0.65 -10.00 16 15 C 0.51 22.28 5.56 87.66 0.49 22.77 16 16 O -0.58 -32.00 16.16 -3.04 -0.05 -32.05 16 17 C 0.06 1.88 1.43 44.64 0.06 1.94 16 18 H 0.11 2.62 3.63 -2.39 -0.01 2.61 16 19 C -0.12 -3.48 6.32 32.08 0.20 -3.28 16 20 C -0.13 -2.40 6.95 31.88 0.22 -2.18 16 21 C 0.04 0.94 6.90 86.65 0.60 1.54 16 22 N -0.55 -16.28 4.71 -891.00 -4.19 -20.47 16 23 C 0.03 0.59 9.10 127.69 1.16 1.75 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 1.61 8.04 -2.39 -0.02 1.59 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.26 6.88 -2.39 -0.02 1.24 16 30 H 0.03 0.83 5.14 -2.39 -0.01 0.82 16 31 H 0.07 2.34 8.12 -2.39 -0.02 2.32 16 32 H 0.09 2.39 5.28 -2.38 -0.01 2.37 16 33 H 0.04 2.12 7.03 -2.39 -0.02 2.10 16 34 H 0.01 0.68 6.78 -2.39 -0.02 0.66 16 35 H 0.27 16.03 8.31 -92.71 -0.77 15.25 16 36 H 0.10 2.34 7.47 -2.39 -0.02 2.32 16 37 H 0.04 1.59 8.05 -2.38 -0.02 1.58 16 38 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 1.34 7.58 -2.39 -0.02 1.33 16 42 H 0.05 0.90 8.09 -2.39 -0.02 0.88 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.05 1.30 7.13 -2.39 -0.02 1.28 16 Total: -1.00 -80.55 336.95 2.42 -78.13 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.90 Total: 13.85 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.43 Total: 0.38 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -5.75 Total: -108.16 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.05 Total: -32.05 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.85 kcal Total: -80.55 2.42 -78.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733870502.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.570 kcal (2) G-P(sol) polarization free energy of solvation -80.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds