Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47407 * 2 1 4 4 C 1.53001 * 109.47006 * 120.00164 * 2 1 3 5 5 N 1.46495 * 109.47404 * 65.53385 * 4 2 1 6 6 C 1.46494 * 120.00306 * 272.03584 * 5 4 2 7 7 C 1.50703 * 109.47243 * 270.00278 * 6 5 4 8 8 H 1.08000 * 120.00150 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00298 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99820 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00406 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47230 * 89.99640 * 11 9 7 13 13 H 1.48504 * 109.47498 * 209.99865 * 11 9 7 14 14 H 1.48506 * 109.46960 * 329.99830 * 11 9 7 15 15 C 1.34773 * 120.00101 * 92.03320 * 5 4 2 16 16 O 1.21283 * 120.00317 * 175.12014 * 15 5 4 17 17 C 1.50700 * 119.99924 * 355.12174 * 15 5 4 18 18 H 1.08997 * 110.36928 * 33.75602 * 17 15 5 19 19 C 1.54383 * 110.41049 * 271.40648 * 17 15 5 20 20 C 1.54263 * 105.05997 * 217.36759 * 19 17 15 21 21 C 1.54380 * 105.06194 * 0.02562 * 20 19 17 22 22 N 1.48560 * 110.41443 * 156.10750 * 17 15 5 23 23 C 1.46894 * 111.00082 * 277.82063 * 22 17 15 24 24 H 1.09002 * 109.46929 * 293.58710 * 1 2 3 25 25 H 1.08997 * 109.47318 * 53.58063 * 1 2 3 26 26 H 1.08994 * 109.47532 * 173.58937 * 1 2 3 27 27 H 1.08995 * 109.47194 * 239.99617 * 2 1 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47319 * 300.00211 * 3 2 1 30 30 H 1.09008 * 109.47094 * 60.00312 * 3 2 1 31 31 H 1.09000 * 109.47253 * 305.53149 * 4 2 1 32 32 H 1.09003 * 109.47013 * 185.53612 * 4 2 1 33 33 H 1.09001 * 109.47856 * 149.99501 * 6 5 4 34 34 H 1.09005 * 109.46889 * 29.99519 * 6 5 4 35 35 H 0.97001 * 120.00062 * 180.02562 * 10 9 7 36 36 H 1.09000 * 110.32320 * 336.26670 * 19 17 15 37 37 H 1.08997 * 110.32037 * 98.37220 * 19 17 15 38 38 H 1.09001 * 110.32278 * 118.89677 * 20 19 17 39 39 H 1.09005 * 110.32506 * 241.00183 * 20 19 17 40 40 H 1.08999 * 110.41064 * 142.63162 * 21 20 19 41 41 H 1.09002 * 110.40792 * 264.95545 * 21 20 19 42 42 H 1.08997 * 109.47227 * 59.99672 * 23 22 17 43 43 H 1.09002 * 109.47386 * 180.02562 * 23 22 17 44 44 H 1.09006 * 109.47132 * 299.99847 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6634 -2.1356 1.1845 6 6 0.3671 -2.5732 1.7081 7 6 0.5103 -2.9381 3.1632 8 1 1.4709 -2.8529 3.6493 9 6 -0.5848 -3.3816 3.8738 10 7 -1.7546 -3.4858 3.2817 11 14 -0.4072 -3.8345 5.6772 12 1 -0.6602 -2.6355 6.5160 13 1 -1.3888 -4.8948 6.0204 14 1 0.9686 -4.3335 5.9291 15 6 2.5096 -3.0341 0.6432 16 8 2.2374 -4.2157 0.6692 17 6 3.7941 -2.5706 0.0058 18 1 4.1855 -1.6994 0.5310 19 6 3.5674 -2.2432 -1.4858 20 6 4.8500 -2.7175 -2.1997 21 6 5.7435 -3.2921 -1.0795 22 7 4.7963 -3.6673 0.0029 23 6 5.4821 -3.7571 1.2988 24 1 -0.3633 0.4112 0.9418 25 1 -0.3634 0.6101 -0.8269 26 1 -0.3634 -1.0212 -0.1147 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.5980 -0.2679 2.1365 32 1 3.1254 -0.6362 1.3002 33 1 0.0235 -3.4426 1.1476 34 1 -0.3575 -1.7653 1.6057 35 1 -2.5252 -3.7975 3.7817 36 1 2.7008 -2.7849 -1.8648 37 1 3.4315 -1.1703 -1.6214 38 1 4.6130 -3.4920 -2.9292 39 1 5.3445 -1.8774 -2.6875 40 1 6.2823 -4.1701 -1.4358 41 1 6.4435 -2.5352 -0.7257 42 1 4.7516 -3.9533 2.0836 43 1 6.2105 -4.5675 1.2690 44 1 5.9935 -2.8169 1.5052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733870503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = -34.725275 kcal Electronic energy + Delta-G solvation = -22253.714541 eV Core-core repulsion = 19205.912244 eV Total energy + Delta-G solvation = -3047.802297 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.87826 -37.69632 -36.17827 -33.46436 -32.27667 -32.07323 -29.60734 -27.43571 -26.80693 -25.59293 -25.32064 -23.23227 -21.13822 -21.01599 -20.11276 -18.11446 -16.82970 -16.37675 -16.06375 -15.41579 -14.65236 -14.47758 -14.37010 -13.96110 -13.69847 -13.58226 -13.25859 -12.91056 -12.37606 -12.22780 -12.22032 -12.07450 -11.77630 -11.47199 -11.44596 -11.38572 -11.22640 -11.00285 -10.89528 -10.88870 -10.72194 -10.59088 -10.31390 -10.17041 -10.06628 -9.52851 -8.81450 -8.37504 -8.19307 -7.53548 -5.99344 -4.03046 3.32291 3.39034 3.41920 3.48524 3.78297 4.33574 4.50386 4.72435 4.73658 4.96062 5.07284 5.12593 5.22052 5.27804 5.35159 5.40605 5.47193 5.51176 5.60591 5.69140 5.73941 5.80814 5.83954 5.88264 5.94879 6.06013 6.10926 6.13550 6.18450 6.20264 6.26696 6.32450 6.60169 6.72278 6.85164 7.09613 7.21123 7.50434 7.64994 7.98110 8.30734 8.53255 8.97280 9.24562 9.61748 11.08524 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.006843 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.100726 B = 4091.032716 C = 5148.911789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.244 3.756 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.896 5.896 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.513 3.487 16 O -0.518 6.518 17 C 0.041 3.959 18 H 0.067 0.933 19 C -0.111 4.111 20 C -0.121 4.121 21 C 0.032 3.968 22 N -0.490 5.490 23 C 0.016 3.984 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.041 0.959 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.389 8.876 -9.168 17.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.139 4.139 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.329 5.329 6 C 0.125 3.875 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.211 1.211 14 H -0.200 1.200 15 C 0.298 3.702 16 O -0.392 6.392 17 C -0.070 4.070 18 H 0.085 0.915 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.096 4.096 22 N -0.214 5.214 23 C -0.132 4.132 24 H 0.076 0.924 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 11.783 7.626 -9.178 16.770 hybrid contribution 0.431 0.613 1.363 1.556 sum 12.214 8.239 -7.815 16.678 Atomic orbital electron populations 1.21909 0.94546 1.02656 1.01224 1.21716 0.97208 0.95758 0.99192 1.21786 1.00382 0.96167 1.01790 1.21560 0.98791 0.82650 0.97897 1.48209 1.20030 1.05992 1.58706 1.19374 0.78083 0.96219 0.93805 1.21453 0.95223 1.44146 0.95293 0.92686 1.24913 0.95186 0.95501 0.98501 1.69931 0.99912 1.47193 1.36466 0.86538 0.77966 0.78127 0.85031 1.20736 1.21119 1.19973 1.19915 0.84624 0.86455 0.79206 1.90674 1.74889 1.16382 1.57269 1.22788 0.93631 0.93284 0.97339 0.91534 1.22270 0.99015 1.01179 0.92490 1.22280 0.95450 1.00499 0.97722 1.23148 0.94561 0.99389 0.92481 1.65059 1.11041 1.40825 1.04518 1.22514 0.98953 0.99952 0.91827 0.92406 0.93664 0.91485 0.91066 0.93101 0.92823 0.92517 0.90130 0.92032 0.94311 0.94118 0.92820 0.90465 0.90545 0.90810 0.91294 0.90017 0.94061 0.90700 0.91173 0.95753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 7.88 37.16 0.29 -1.93 16 2 C -0.12 -1.63 3.12 -90.62 -0.28 -1.91 16 3 C -0.14 -1.53 9.19 37.16 0.34 -1.19 16 4 C 0.12 1.89 4.72 -4.04 -0.02 1.87 16 5 N -0.60 -12.66 2.34 -175.06 -0.41 -13.07 16 6 C 0.24 6.36 4.28 -5.20 -0.02 6.34 16 7 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 8 H 0.05 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 11 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 15 C 0.51 11.05 6.49 -10.99 -0.07 10.98 16 16 O -0.52 -13.76 16.29 5.55 0.09 -13.67 16 17 C 0.04 0.67 2.05 -67.22 -0.14 0.53 16 18 H 0.07 0.98 5.80 -51.93 -0.30 0.68 16 19 C -0.11 -1.49 5.66 -25.35 -0.14 -1.63 16 20 C -0.12 -1.33 7.00 -25.35 -0.18 -1.51 16 21 C 0.03 0.38 6.50 -2.13 -0.01 0.37 16 22 N -0.49 -7.87 4.99 -231.64 -1.16 -9.03 16 23 C 0.02 0.24 9.45 60.06 0.57 0.81 16 24 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 25 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.21 6.29 -51.93 -0.33 0.88 16 27 H 0.07 0.96 5.36 -51.93 -0.28 0.68 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.08 1.39 8.09 -51.93 -0.42 0.97 16 32 H 0.06 0.88 5.85 -51.93 -0.30 0.58 16 33 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 34 H 0.04 1.05 5.80 -51.93 -0.30 0.75 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.08 1.18 7.85 -51.93 -0.41 0.77 16 37 H 0.08 0.86 6.49 -51.93 -0.34 0.52 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.43 7.91 -51.93 -0.41 0.02 16 42 H 0.07 1.31 7.96 -51.93 -0.41 0.90 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.02 0.31 7.98 -51.93 -0.41 -0.11 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -33.30 341.15 -8.35 -41.66 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -7.65 Total: -1.24 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -0.09 Total: -0.91 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.83 Total: -48.16 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: 0.09 Total: -13.67 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.30 -8.35 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733870503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.933 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds