Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47407 * 2 1 4 4 C 1.53001 * 109.47006 * 120.00164 * 2 1 3 5 5 N 1.46495 * 109.47404 * 65.53385 * 4 2 1 6 6 C 1.46494 * 120.00306 * 272.03584 * 5 4 2 7 7 C 1.50703 * 109.47243 * 270.00278 * 6 5 4 8 8 H 1.08000 * 120.00150 * 359.97438 * 7 6 5 9 9 C 1.37872 * 120.00298 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99820 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00406 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47230 * 89.99640 * 11 9 7 13 13 H 1.48504 * 109.47498 * 209.99865 * 11 9 7 14 14 H 1.48506 * 109.46960 * 329.99830 * 11 9 7 15 15 C 1.34773 * 120.00101 * 92.03320 * 5 4 2 16 16 O 1.21283 * 120.00317 * 175.12014 * 15 5 4 17 17 C 1.50700 * 119.99924 * 355.12174 * 15 5 4 18 18 H 1.08997 * 110.36928 * 33.75602 * 17 15 5 19 19 C 1.54383 * 110.41049 * 271.40648 * 17 15 5 20 20 C 1.54263 * 105.05997 * 217.36759 * 19 17 15 21 21 C 1.54380 * 105.06194 * 0.02562 * 20 19 17 22 22 N 1.48560 * 110.41443 * 156.10750 * 17 15 5 23 23 C 1.46894 * 111.00082 * 277.82063 * 22 17 15 24 24 H 1.09002 * 109.46929 * 293.58710 * 1 2 3 25 25 H 1.08997 * 109.47318 * 53.58063 * 1 2 3 26 26 H 1.08994 * 109.47532 * 173.58937 * 1 2 3 27 27 H 1.08995 * 109.47194 * 239.99617 * 2 1 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47319 * 300.00211 * 3 2 1 30 30 H 1.09008 * 109.47094 * 60.00312 * 3 2 1 31 31 H 1.09000 * 109.47253 * 305.53149 * 4 2 1 32 32 H 1.09003 * 109.47013 * 185.53612 * 4 2 1 33 33 H 1.09001 * 109.47856 * 149.99501 * 6 5 4 34 34 H 1.09005 * 109.46889 * 29.99519 * 6 5 4 35 35 H 0.97001 * 120.00062 * 180.02562 * 10 9 7 36 36 H 1.09000 * 110.32320 * 336.26670 * 19 17 15 37 37 H 1.08997 * 110.32037 * 98.37220 * 19 17 15 38 38 H 1.09001 * 110.32278 * 118.89677 * 20 19 17 39 39 H 1.09005 * 110.32506 * 241.00183 * 20 19 17 40 40 H 1.08999 * 110.41064 * 142.63162 * 21 20 19 41 41 H 1.09002 * 110.40792 * 264.95545 * 21 20 19 42 42 H 1.08997 * 109.47227 * 59.99672 * 23 22 17 43 43 H 1.09002 * 109.47386 * 180.02562 * 23 22 17 44 44 H 1.09006 * 109.47132 * 299.99847 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6634 -2.1356 1.1845 6 6 0.3671 -2.5732 1.7081 7 6 0.5103 -2.9381 3.1632 8 1 1.4709 -2.8529 3.6493 9 6 -0.5848 -3.3816 3.8738 10 7 -1.7546 -3.4858 3.2817 11 14 -0.4072 -3.8345 5.6772 12 1 -0.6602 -2.6355 6.5160 13 1 -1.3888 -4.8948 6.0204 14 1 0.9686 -4.3335 5.9291 15 6 2.5096 -3.0341 0.6432 16 8 2.2374 -4.2157 0.6692 17 6 3.7941 -2.5706 0.0058 18 1 4.1855 -1.6994 0.5310 19 6 3.5674 -2.2432 -1.4858 20 6 4.8500 -2.7175 -2.1997 21 6 5.7435 -3.2921 -1.0795 22 7 4.7963 -3.6673 0.0029 23 6 5.4821 -3.7571 1.2988 24 1 -0.3633 0.4112 0.9418 25 1 -0.3634 0.6101 -0.8269 26 1 -0.3634 -1.0212 -0.1147 27 1 1.8933 -0.5139 -0.8899 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.5980 -0.2679 2.1365 32 1 3.1254 -0.6362 1.3002 33 1 0.0235 -3.4426 1.1476 34 1 -0.3575 -1.7653 1.6057 35 1 -2.5252 -3.7975 3.7817 36 1 2.7008 -2.7849 -1.8648 37 1 3.4315 -1.1703 -1.6214 38 1 4.6130 -3.4920 -2.9292 39 1 5.3445 -1.8774 -2.6875 40 1 6.2823 -4.1701 -1.4358 41 1 6.4435 -2.5352 -0.7257 42 1 4.7516 -3.9533 2.0836 43 1 6.2105 -4.5675 1.2690 44 1 5.9935 -2.8169 1.5052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733870503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = -57.697838 kcal Electronic energy + Delta-G solvation = -22254.710706 eV Core-core repulsion = 19205.912244 eV Total energy + Delta-G solvation = -3048.798462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32625 -39.01488 -37.69697 -35.34580 -34.10160 -33.16117 -31.04219 -29.13164 -27.95664 -26.89068 -26.64487 -25.09837 -22.60153 -22.01220 -21.30446 -19.59185 -18.71602 -18.16179 -17.49067 -16.75712 -16.42455 -15.85402 -15.77058 -15.16672 -15.14544 -14.72389 -14.66701 -14.22075 -14.15424 -13.67764 -13.45656 -13.32727 -13.08684 -12.97529 -12.88777 -12.71679 -12.62481 -12.47642 -12.33340 -12.17185 -12.11267 -12.02052 -11.79873 -11.66274 -11.48797 -11.31295 -10.62641 -10.46448 -9.39283 -9.33426 -8.22098 -6.36416 1.32701 1.36325 1.46317 1.84804 2.25142 2.40181 3.06363 3.13742 3.56704 3.66162 3.79337 3.96359 4.05669 4.10376 4.17320 4.32458 4.39586 4.44840 4.57285 4.64742 4.66827 4.76469 4.84779 4.89921 4.92899 4.93783 5.02260 5.05720 5.08339 5.13376 5.14974 5.23816 5.27105 5.31112 5.47620 5.51944 5.60488 5.78476 5.92350 6.05093 6.09678 6.71530 6.85462 7.29319 7.57283 8.84358 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016652 B = 0.006843 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.100726 B = 4091.032716 C = 5148.911789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C -0.136 4.136 4 C 0.110 3.890 5 N -0.600 5.600 6 C 0.264 3.736 7 C -0.542 4.542 8 H 0.047 0.953 9 C 0.008 3.992 10 N -0.927 5.927 11 Si 0.964 3.036 12 H -0.261 1.261 13 H -0.280 1.280 14 H -0.276 1.276 15 C 0.503 3.497 16 O -0.584 6.584 17 C 0.053 3.947 18 H 0.091 0.909 19 C -0.109 4.109 20 C -0.114 4.114 21 C 0.034 3.966 22 N -0.528 5.528 23 C 0.020 3.980 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.092 0.908 33 H -0.014 1.014 34 H 0.038 0.962 35 H 0.267 0.733 36 H 0.047 0.953 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.033 0.967 43 H 0.085 0.915 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.064 11.360 -9.697 21.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 C -0.193 4.193 4 C -0.013 4.013 5 N -0.330 5.330 6 C 0.142 3.858 7 C -0.580 4.580 8 H 0.065 0.935 9 C -0.191 4.191 10 N -0.567 5.567 11 Si 0.789 3.211 12 H -0.186 1.186 13 H -0.205 1.205 14 H -0.201 1.201 15 C 0.291 3.709 16 O -0.464 6.464 17 C -0.059 4.059 18 H 0.108 0.892 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.093 4.093 22 N -0.253 5.253 23 C -0.129 4.129 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.004 0.996 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.103 0.897 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.485 10.171 -9.721 20.193 hybrid contribution -0.432 -0.190 1.496 1.568 sum 14.053 9.981 -8.225 19.098 Atomic orbital electron populations 1.21877 0.96240 1.00483 1.01642 1.21660 0.95683 0.97943 0.97738 1.21736 1.01778 0.93201 1.02626 1.21887 1.00615 0.79687 0.99067 1.48211 1.18355 1.08411 1.58070 1.18802 0.80716 0.94075 0.92181 1.21726 0.95017 1.44739 0.96561 0.93500 1.25823 0.94764 0.95143 1.03350 1.70051 1.00672 1.47659 1.38360 0.85466 0.77709 0.78518 0.79421 1.18576 1.20524 1.20139 1.21042 0.86121 0.85555 0.78176 1.90625 1.76657 1.19245 1.59825 1.22700 0.90609 0.93809 0.98771 0.89180 1.22324 0.99356 1.02676 0.90396 1.22314 0.93979 1.01706 0.97200 1.23258 0.94248 1.00629 0.91193 1.64972 1.12628 1.41694 1.06025 1.22452 0.98055 1.01920 0.90426 0.93589 0.91052 0.95473 0.90339 0.90817 0.91136 0.92622 0.91370 0.88989 0.99586 0.94379 0.92455 0.93437 0.87556 0.91168 0.87555 0.89234 0.91497 0.94813 0.89677 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 7.88 71.98 0.57 -3.87 16 2 C -0.11 -2.83 3.12 -10.80 -0.03 -2.86 16 3 C -0.14 -2.35 9.19 71.98 0.66 -1.69 16 4 C 0.11 3.52 4.72 86.38 0.41 3.92 16 5 N -0.60 -26.49 2.34 -826.17 -1.93 -28.42 16 6 C 0.26 14.69 4.28 85.64 0.37 15.06 16 7 C -0.54 -32.53 9.39 25.60 0.24 -32.29 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.01 0.47 5.46 84.65 0.46 0.94 16 10 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 11 Si 0.96 46.47 29.54 68.60 2.03 48.49 16 12 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 13 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 14 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 15 C 0.50 22.55 6.49 87.66 0.57 23.12 16 16 O -0.58 -33.29 16.29 -3.04 -0.05 -33.34 16 17 C 0.05 1.64 2.05 44.32 0.09 1.73 16 18 H 0.09 2.35 5.80 -2.39 -0.01 2.33 16 19 C -0.11 -2.67 5.66 31.49 0.18 -2.49 16 20 C -0.11 -2.09 7.00 31.49 0.22 -1.87 16 21 C 0.03 0.68 6.50 86.43 0.56 1.24 16 22 N -0.53 -16.32 4.99 -886.79 -4.42 -20.74 16 23 C 0.02 0.57 9.45 127.69 1.21 1.77 16 24 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.03 1.02 6.29 -2.39 -0.02 1.00 16 27 H 0.08 1.91 5.36 -2.39 -0.01 1.90 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.07 2.35 8.09 -2.39 -0.02 2.33 16 32 H 0.09 2.37 5.85 -2.39 -0.01 2.36 16 33 H -0.01 -0.92 7.49 -2.39 -0.02 -0.93 16 34 H 0.04 2.12 5.80 -2.38 -0.01 2.10 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.05 1.44 7.85 -2.39 -0.02 1.43 16 37 H 0.11 1.93 6.49 -2.39 -0.02 1.92 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.05 7.91 -2.39 -0.02 1.03 16 42 H 0.03 1.21 7.96 -2.39 -0.02 1.19 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.05 1.14 7.98 -2.38 -0.02 1.12 16 Total: -1.00 -79.25 341.15 2.36 -76.89 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.96 Total: 11.71 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.50 Total: 2.72 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -6.07 Total: -106.47 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.05 Total: -33.34 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -79.25 2.36 -76.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733870503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.194 kcal (2) G-P(sol) polarization free energy of solvation -79.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds