Wall clock time and date at job start Mon Mar 30 2020 00:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47425 * 2 1 4 4 C 1.52997 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.88267 * 57.35616 * 4 3 2 6 6 C 1.54621 * 110.96980 * 293.54402 * 4 3 2 7 7 C 1.51288 * 104.19354 * 217.08226 * 6 4 3 8 8 O 1.21285 * 124.94203 * 196.22693 * 7 6 4 9 9 N 1.34411 * 110.11552 * 16.49723 * 7 6 4 10 10 C 1.46499 * 124.35142 * 180.15959 * 9 7 6 11 11 N 1.46896 * 109.47039 * 84.28379 * 10 9 7 12 12 C 1.46906 * 110.99713 * 209.20889 * 11 10 9 13 13 C 1.53008 * 109.46855 * 76.00464 * 12 11 10 14 14 C 1.46895 * 111.00114 * 85.26168 * 11 10 9 15 15 C 1.50705 * 109.47265 * 190.00212 * 14 11 10 16 16 H 1.07998 * 119.99572 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00311 * 179.97438 * 15 14 11 18 18 N 1.31518 * 119.99831 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99882 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47197 * 90.00020 * 19 17 15 21 21 H 1.48501 * 109.47014 * 209.99537 * 19 17 15 22 22 H 1.48496 * 109.47422 * 329.99702 * 19 17 15 23 23 C 1.46763 * 111.30211 * 0.02562 * 9 7 6 24 24 H 1.08994 * 109.47150 * 59.99782 * 1 2 3 25 25 H 1.08998 * 109.47021 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46774 * 300.00530 * 1 2 3 27 27 H 1.09001 * 109.47231 * 239.99216 * 2 1 3 28 28 H 1.09004 * 109.47095 * 119.99686 * 2 1 3 29 29 H 1.09001 * 109.47032 * 59.99443 * 3 2 1 30 30 H 1.08999 * 109.46288 * 300.00039 * 3 2 1 31 31 H 1.09002 * 110.48506 * 98.40769 * 6 4 3 32 32 H 1.08993 * 110.60065 * 335.81719 * 6 4 3 33 33 H 1.09005 * 109.47214 * 204.28277 * 10 9 7 34 34 H 1.09000 * 109.47143 * 324.28133 * 10 9 7 35 35 H 1.08999 * 109.46923 * 195.99848 * 12 11 10 36 36 H 1.08995 * 109.47422 * 315.99888 * 12 11 10 37 37 H 1.08999 * 109.46613 * 294.83729 * 13 12 11 38 38 H 1.08993 * 109.47318 * 54.83505 * 13 12 11 39 39 H 1.08995 * 109.46758 * 174.84028 * 13 12 11 40 40 H 1.09010 * 109.46874 * 309.99378 * 14 11 10 41 41 H 1.09000 * 109.47770 * 69.99790 * 14 11 10 42 42 H 0.96992 * 119.99533 * 180.02562 * 18 17 15 43 43 H 1.09004 * 110.38824 * 224.25298 * 23 9 7 44 44 H 1.08997 * 110.12087 * 102.33738 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9590 0.8929 -0.8567 6 6 4.1228 0.8659 1.3246 7 6 5.3481 1.7055 1.6119 8 8 6.2237 1.4106 2.3977 9 7 5.3223 2.8286 0.8740 10 6 6.3598 3.8625 0.9055 11 7 7.4532 3.4867 -0.0006 12 6 8.7343 4.0349 0.4646 13 6 9.2412 3.2108 1.6500 14 6 7.1667 3.9134 -1.3767 15 6 8.1785 3.3037 -2.3126 16 1 8.9566 2.6636 -1.9239 17 6 8.1106 3.5630 -3.6651 18 7 7.1626 4.3421 -4.1385 19 14 9.3651 2.8079 -4.8249 20 1 8.8676 1.4933 -5.3044 21 1 9.5734 3.7113 -5.9850 22 1 10.6515 2.6187 -4.1077 23 6 4.1227 2.8848 0.0302 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5140 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9562 -0.8900 31 1 4.3988 -0.1811 1.1989 32 1 3.3907 0.9731 2.1248 33 1 5.9343 4.8140 0.5865 34 1 6.7457 3.9591 1.9203 35 1 9.4628 3.9929 -0.3451 36 1 8.5952 5.0704 0.7749 37 1 8.5582 3.3267 2.4915 38 1 9.2931 2.1598 1.3661 39 1 10.2334 3.5592 1.9367 40 1 6.1665 3.5840 -1.6585 41 1 7.2225 5.0001 -1.4393 42 1 7.1147 4.5242 -5.0899 43 1 4.3821 3.2098 -0.9774 44 1 3.3885 3.5616 0.4670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000743356618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:09 Heat of formation + Delta-G solvation = -46.730285 kcal Electronic energy + Delta-G solvation = -21450.320768 eV Core-core repulsion = 18401.997895 eV Total energy + Delta-G solvation = -3048.322873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09562 -36.85529 -36.62993 -34.52487 -32.68427 -31.58129 -29.76699 -28.01355 -27.23774 -25.71241 -23.97261 -22.42347 -21.79221 -20.43155 -20.22602 -18.84304 -16.64988 -16.52559 -15.92403 -15.24044 -15.05646 -14.58204 -14.28425 -13.86430 -13.71059 -13.62829 -13.37537 -12.96971 -12.87615 -12.50438 -12.29714 -12.17292 -11.97828 -11.62247 -11.51431 -11.31045 -11.05328 -11.03964 -10.76485 -10.71002 -10.70348 -10.57778 -10.43164 -10.12893 -9.80673 -9.38970 -9.20793 -8.50790 -8.27395 -7.29286 -6.06224 -4.06706 3.03253 3.30435 3.36488 3.40973 3.51452 4.41030 4.48556 4.62041 4.71997 4.97886 5.04229 5.07215 5.24054 5.28477 5.30423 5.52185 5.56513 5.66402 5.67326 5.73357 5.77991 5.81684 5.85815 5.87432 5.96011 6.01147 6.08352 6.12883 6.20561 6.23292 6.36309 6.45231 6.74026 6.90008 6.95994 7.26439 7.29637 7.61718 7.79779 8.05445 8.20199 8.50853 8.68550 9.01286 9.57645 11.04447 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.005678 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.558734 B = 4930.237344 C = 6221.943273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.107 4.107 4 C -0.099 4.099 5 H 0.093 0.907 6 C -0.149 4.149 7 C 0.523 3.477 8 O -0.537 6.537 9 N -0.600 5.600 10 C 0.290 3.710 11 N -0.549 5.549 12 C 0.064 3.936 13 C -0.141 4.141 14 C 0.194 3.806 15 C -0.505 4.505 16 H 0.063 0.937 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.896 3.104 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.103 3.897 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.018 0.982 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.045 0.955 40 H 0.030 0.970 41 H -0.010 1.010 42 H 0.261 0.739 43 H 0.086 0.914 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 -3.643 8.708 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.145 4.145 4 C -0.118 4.118 5 H 0.111 0.889 6 C -0.189 4.189 7 C 0.310 3.690 8 O -0.414 6.414 9 N -0.334 5.334 10 C 0.078 3.922 11 N -0.276 5.276 12 C -0.065 4.065 13 C -0.199 4.199 14 C 0.069 3.931 15 C -0.544 4.544 16 H 0.081 0.919 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.724 3.276 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.020 4.020 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.008 0.992 42 H 0.070 0.930 43 H 0.104 0.896 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.614 -4.140 8.958 14.493 hybrid contribution 0.505 0.530 -0.978 1.222 sum -10.109 -3.610 7.981 13.376 Atomic orbital electron populations 1.21775 0.96060 1.01424 1.01719 1.21542 0.95567 0.96860 1.02380 1.21591 0.93315 0.97112 1.02467 1.22181 0.95725 0.95879 0.98033 0.88885 1.22410 0.96999 1.00876 0.98612 1.20743 0.86808 0.81594 0.79900 1.90667 1.40418 1.73316 1.37023 1.48359 1.21596 1.21772 1.41683 1.21686 0.85832 0.87084 0.97557 1.61810 1.00832 1.60749 1.04187 1.21895 0.92397 0.94311 0.97851 1.21767 0.99025 1.01341 0.97738 1.19799 0.97511 0.93568 0.82197 1.21169 1.13007 1.28959 0.91266 0.91893 1.24961 0.95962 0.95310 0.98228 1.69948 1.32965 1.37315 1.13705 0.86519 0.81745 0.78980 0.80317 1.20666 1.21322 1.19836 1.22197 0.86434 0.96774 0.96594 0.92745 0.92954 0.92890 0.91771 0.91835 0.91708 0.91240 0.88620 0.88510 0.93220 0.90326 0.89421 0.96339 0.93583 0.92135 0.93582 0.95177 0.99213 0.92963 0.89583 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.08 5.78 -26.73 -0.15 -1.23 16 3 C -0.11 -0.99 4.56 -26.73 -0.12 -1.12 16 4 C -0.10 -1.20 3.18 -88.99 -0.28 -1.48 16 5 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 6 C -0.15 -1.91 5.58 -26.74 -0.15 -2.06 16 7 C 0.52 9.30 8.02 -10.86 -0.09 9.21 16 8 O -0.54 -11.49 17.67 5.55 0.10 -11.39 16 9 N -0.60 -10.44 3.17 -175.90 -0.56 -11.00 16 10 C 0.29 5.45 5.52 -63.32 -0.35 5.10 16 11 N -0.55 -12.09 4.52 -239.97 -1.09 -13.17 16 12 C 0.06 1.29 5.45 -3.82 -0.02 1.26 16 13 C -0.14 -2.54 9.97 37.16 0.37 -2.17 16 14 C 0.19 4.93 4.55 -4.98 -0.02 4.91 16 15 C -0.51 -14.09 8.23 -34.44 -0.28 -14.37 16 16 H 0.06 1.78 7.31 -52.49 -0.38 1.40 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 19 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C 0.10 1.48 6.80 -3.12 -0.02 1.46 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 29 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 32 H 0.10 1.04 7.86 -51.93 -0.41 0.63 16 33 H 0.05 0.89 7.84 -51.93 -0.41 0.48 16 34 H 0.08 1.44 6.43 -51.93 -0.33 1.10 16 35 H 0.09 1.92 6.58 -51.93 -0.34 1.58 16 36 H 0.02 0.34 8.00 -51.93 -0.42 -0.07 16 37 H 0.05 0.82 6.96 -51.93 -0.36 0.46 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.03 0.80 6.30 -51.92 -0.33 0.47 16 41 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.09 1.43 6.49 -51.93 -0.34 1.09 16 44 H 0.06 0.78 7.89 -51.93 -0.41 0.37 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -31.58 349.49 -9.31 -40.89 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -7.90 Total: -2.03 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.85 Total: 0.21 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.91 Total: -49.52 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.10 Total: -11.39 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.58 -9.31 -40.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743356618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.836 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds