Wall clock time and date at job start Mon Mar 30 2020 00:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47425 * 2 1 4 4 C 1.52997 * 109.47101 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.88267 * 57.35616 * 4 3 2 6 6 C 1.54621 * 110.96980 * 293.54402 * 4 3 2 7 7 C 1.51288 * 104.19354 * 217.08226 * 6 4 3 8 8 O 1.21285 * 124.94203 * 196.22693 * 7 6 4 9 9 N 1.34411 * 110.11552 * 16.49723 * 7 6 4 10 10 C 1.46499 * 124.35142 * 180.15959 * 9 7 6 11 11 N 1.46896 * 109.47039 * 84.28379 * 10 9 7 12 12 C 1.46906 * 110.99713 * 209.20889 * 11 10 9 13 13 C 1.53008 * 109.46855 * 76.00464 * 12 11 10 14 14 C 1.46895 * 111.00114 * 85.26168 * 11 10 9 15 15 C 1.50705 * 109.47265 * 190.00212 * 14 11 10 16 16 H 1.07998 * 119.99572 * 359.97438 * 15 14 11 17 17 C 1.37876 * 120.00311 * 179.97438 * 15 14 11 18 18 N 1.31518 * 119.99831 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99882 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47197 * 90.00020 * 19 17 15 21 21 H 1.48501 * 109.47014 * 209.99537 * 19 17 15 22 22 H 1.48496 * 109.47422 * 329.99702 * 19 17 15 23 23 C 1.46763 * 111.30211 * 0.02562 * 9 7 6 24 24 H 1.08994 * 109.47150 * 59.99782 * 1 2 3 25 25 H 1.08998 * 109.47021 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46774 * 300.00530 * 1 2 3 27 27 H 1.09001 * 109.47231 * 239.99216 * 2 1 3 28 28 H 1.09004 * 109.47095 * 119.99686 * 2 1 3 29 29 H 1.09001 * 109.47032 * 59.99443 * 3 2 1 30 30 H 1.08999 * 109.46288 * 300.00039 * 3 2 1 31 31 H 1.09002 * 110.48506 * 98.40769 * 6 4 3 32 32 H 1.08993 * 110.60065 * 335.81719 * 6 4 3 33 33 H 1.09005 * 109.47214 * 204.28277 * 10 9 7 34 34 H 1.09000 * 109.47143 * 324.28133 * 10 9 7 35 35 H 1.08999 * 109.46923 * 195.99848 * 12 11 10 36 36 H 1.08995 * 109.47422 * 315.99888 * 12 11 10 37 37 H 1.08999 * 109.46613 * 294.83729 * 13 12 11 38 38 H 1.08993 * 109.47318 * 54.83505 * 13 12 11 39 39 H 1.08995 * 109.46758 * 174.84028 * 13 12 11 40 40 H 1.09010 * 109.46874 * 309.99378 * 14 11 10 41 41 H 1.09000 * 109.47770 * 69.99790 * 14 11 10 42 42 H 0.96992 * 119.99533 * 180.02562 * 18 17 15 43 43 H 1.09004 * 110.38824 * 224.25298 * 23 9 7 44 44 H 1.08997 * 110.12087 * 102.33738 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9590 0.8929 -0.8567 6 6 4.1228 0.8659 1.3246 7 6 5.3481 1.7055 1.6119 8 8 6.2237 1.4106 2.3977 9 7 5.3223 2.8286 0.8740 10 6 6.3598 3.8625 0.9055 11 7 7.4532 3.4867 -0.0006 12 6 8.7343 4.0349 0.4646 13 6 9.2412 3.2108 1.6500 14 6 7.1667 3.9134 -1.3767 15 6 8.1785 3.3037 -2.3126 16 1 8.9566 2.6636 -1.9239 17 6 8.1106 3.5630 -3.6651 18 7 7.1626 4.3421 -4.1385 19 14 9.3651 2.8079 -4.8249 20 1 8.8676 1.4933 -5.3044 21 1 9.5734 3.7113 -5.9850 22 1 10.6515 2.6187 -4.1077 23 6 4.1227 2.8848 0.0302 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5140 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6767 1.9562 -0.8900 31 1 4.3988 -0.1811 1.1989 32 1 3.3907 0.9731 2.1248 33 1 5.9343 4.8140 0.5865 34 1 6.7457 3.9591 1.9203 35 1 9.4628 3.9929 -0.3451 36 1 8.5952 5.0704 0.7749 37 1 8.5582 3.3267 2.4915 38 1 9.2931 2.1598 1.3661 39 1 10.2334 3.5592 1.9367 40 1 6.1665 3.5840 -1.6585 41 1 7.2225 5.0001 -1.4393 42 1 7.1147 4.5242 -5.0899 43 1 4.3821 3.2098 -0.9774 44 1 3.3885 3.5616 0.4670 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000743356618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:08 Heat of formation + Delta-G solvation = -66.121930 kcal Electronic energy + Delta-G solvation = -21451.161653 eV Core-core repulsion = 18401.997895 eV Total energy + Delta-G solvation = -3049.163758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.40828 -38.51329 -37.86802 -35.63730 -34.75020 -32.71138 -31.44969 -29.24241 -28.80942 -26.99633 -25.44439 -24.29117 -22.64688 -21.92406 -21.34120 -20.24729 -18.58520 -17.93132 -17.30246 -16.89015 -16.42983 -16.01057 -15.64606 -15.39599 -15.18342 -14.75491 -14.44564 -14.34878 -14.10857 -14.02074 -13.86566 -13.56684 -13.15577 -12.95865 -12.90245 -12.67629 -12.58226 -12.41101 -12.32693 -12.16545 -11.92417 -11.75138 -11.65650 -11.44160 -11.34537 -11.28025 -10.70582 -10.62405 -9.75263 -9.06494 -8.21816 -6.30444 1.39079 1.39510 1.50702 1.64330 2.18213 2.38825 3.10489 3.32898 3.46552 3.52410 3.79700 4.05173 4.16390 4.23284 4.27936 4.31244 4.40111 4.45434 4.49323 4.63498 4.65925 4.72767 4.79573 4.85429 4.93084 5.01253 5.05064 5.07190 5.12627 5.15916 5.25335 5.30297 5.39067 5.40511 5.50116 5.57388 5.58629 5.67412 6.04575 6.19651 6.42855 6.58742 6.84467 7.27982 7.38593 8.88404 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014830 B = 0.005678 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.558734 B = 4930.237344 C = 6221.943273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.088 4.088 5 H 0.076 0.924 6 C -0.135 4.135 7 C 0.509 3.491 8 O -0.580 6.580 9 N -0.606 5.606 10 C 0.289 3.711 11 N -0.562 5.562 12 C 0.063 3.937 13 C -0.126 4.126 14 C 0.213 3.787 15 C -0.524 4.524 16 H 0.053 0.947 17 C 0.010 3.990 18 N -0.928 5.928 19 Si 0.961 3.039 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.269 1.269 23 C 0.101 3.899 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.128 0.872 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.047 0.953 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.014 0.986 41 H -0.034 1.034 42 H 0.265 0.735 43 H 0.057 0.943 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.036 -4.219 9.199 15.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.136 4.136 4 C -0.107 4.107 5 H 0.094 0.906 6 C -0.174 4.174 7 C 0.298 3.702 8 O -0.460 6.460 9 N -0.340 5.340 10 C 0.078 3.922 11 N -0.289 5.289 12 C -0.065 4.065 13 C -0.183 4.183 14 C 0.088 3.912 15 C -0.562 4.562 16 H 0.071 0.929 17 C -0.188 4.188 18 N -0.568 5.568 19 Si 0.786 3.214 20 H -0.201 1.201 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.021 4.021 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.145 0.855 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.032 0.968 41 H -0.017 1.017 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.558 -4.715 9.449 15.656 hybrid contribution 0.782 0.751 -1.109 1.551 sum -10.776 -3.964 8.339 14.191 Atomic orbital electron populations 1.21760 0.95147 1.01880 1.02056 1.21538 0.96333 0.96138 1.02326 1.21555 0.90674 0.97997 1.03400 1.22134 0.97739 0.93809 0.97055 0.90551 1.22412 0.95209 1.00122 0.99691 1.21615 0.87702 0.81839 0.79038 1.90633 1.42341 1.74202 1.38823 1.48526 1.21949 1.21534 1.41955 1.21690 0.85533 0.88014 0.97010 1.61800 1.02580 1.61313 1.03238 1.21911 0.91134 0.95642 0.97839 1.21627 1.00624 0.99499 0.96572 1.19422 0.96075 0.91655 0.84088 1.21405 1.13401 1.29170 0.92255 0.92902 1.25752 0.97774 0.95594 0.99718 1.70046 1.34350 1.38179 1.14257 0.85504 0.79342 0.78289 0.78221 1.20067 1.20439 1.19383 1.22364 0.85925 0.99029 0.94824 0.92839 0.92504 0.92140 0.92540 0.91281 0.90033 0.91062 0.87891 0.85452 0.92432 0.89694 0.91690 0.94770 0.93359 0.94358 0.90620 0.96792 1.01653 0.92635 0.92441 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 71.98 0.71 -1.19 16 2 C -0.13 -1.85 5.78 30.60 0.18 -1.67 16 3 C -0.10 -1.58 4.56 30.60 0.14 -1.44 16 4 C -0.09 -2.02 3.18 -9.74 -0.03 -2.05 16 5 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 6 C -0.13 -3.21 5.58 30.59 0.17 -3.03 16 7 C 0.51 17.82 8.02 87.90 0.71 18.53 16 8 O -0.58 -24.81 17.67 -3.04 -0.05 -24.86 16 9 N -0.61 -21.00 3.17 -829.03 -2.63 -23.63 16 10 C 0.29 10.93 5.52 170.81 0.94 11.87 16 11 N -0.56 -25.30 4.52 -913.13 -4.13 -29.43 16 12 C 0.06 2.55 5.45 86.30 0.47 3.03 16 13 C -0.13 -4.46 9.97 71.98 0.72 -3.75 16 14 C 0.21 11.21 4.55 85.56 0.39 11.60 16 15 C -0.52 -29.89 8.23 25.60 0.21 -29.68 16 16 H 0.05 3.06 7.31 -2.91 -0.02 3.04 16 17 C 0.01 0.58 5.46 84.65 0.46 1.04 16 18 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 19 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 C 0.10 2.83 6.80 86.83 0.59 3.42 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.95 7.51 -2.38 -0.02 0.93 16 29 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.13 2.30 7.86 -2.39 -0.02 2.28 16 33 H 0.06 2.07 7.84 -2.38 -0.02 2.05 16 34 H 0.09 3.09 6.43 -2.39 -0.02 3.07 16 35 H 0.06 2.92 6.58 -2.39 -0.02 2.90 16 36 H 0.03 1.27 8.00 -2.39 -0.02 1.25 16 37 H 0.05 1.68 6.96 -2.39 -0.02 1.67 16 38 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.01 0.78 6.30 -2.38 -0.02 0.76 16 41 H -0.03 -1.92 8.12 -2.39 -0.02 -1.94 16 42 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.06 1.96 6.49 -2.38 -0.02 1.94 16 44 H 0.10 2.09 7.89 -2.39 -0.02 2.08 16 Total: -1.00 -69.02 349.49 2.10 -66.92 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.94 Total: 12.03 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.66 Total: 6.68 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -6.48 Total: -107.25 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.05 Total: -24.86 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -69.02 2.10 -66.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000743356618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.799 kcal (2) G-P(sol) polarization free energy of solvation -69.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds