Wall clock time and date at job start Mon Mar 30 2020 00:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47594 * 2 1 4 4 C 1.53000 * 109.47386 * 186.02013 * 3 2 1 5 5 H 1.09004 * 109.58346 * 187.70575 * 4 3 2 6 6 C 1.53196 * 109.58526 * 308.12649 * 4 3 2 7 7 H 1.09001 * 109.49559 * 54.44070 * 6 4 3 8 8 C 1.52998 * 109.49762 * 294.37469 * 6 4 3 9 9 C 1.53035 * 109.31114 * 174.42247 * 6 4 3 10 10 C 1.53042 * 109.53955 * 298.63666 * 9 6 4 11 11 C 1.52761 * 109.38284 * 61.24041 * 10 9 6 12 12 N 1.46923 * 109.58625 * 67.41773 * 4 3 2 13 13 C 1.34771 * 120.63163 * 6.58456 * 12 4 3 14 14 O 1.21589 * 120.00188 * 357.49639 * 13 12 4 15 15 N 1.34775 * 119.99820 * 177.77043 * 13 12 4 16 16 C 1.46507 * 120.00255 * 184.94114 * 15 13 12 17 17 C 1.50693 * 109.47478 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99838 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00271 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99777 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00311 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47060 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47163 * 119.99993 * 21 19 17 24 24 H 1.48500 * 109.47347 * 239.99931 * 21 19 17 25 25 H 1.09005 * 109.47105 * 60.00055 * 1 2 3 26 26 H 1.08998 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46912 * 300.00504 * 1 2 3 28 28 H 1.09007 * 109.47220 * 239.99524 * 2 1 3 29 29 H 1.09005 * 109.47105 * 119.99945 * 2 1 3 30 30 H 1.08999 * 109.47226 * 66.01901 * 3 2 1 31 31 H 1.09004 * 109.46941 * 306.01865 * 3 2 1 32 32 H 1.09001 * 109.47247 * 60.00314 * 8 6 4 33 33 H 1.08994 * 109.46829 * 179.97438 * 8 6 4 34 34 H 1.08996 * 109.47301 * 300.00066 * 8 6 4 35 35 H 1.08997 * 109.46355 * 58.65596 * 9 6 4 36 36 H 1.09000 * 109.46215 * 178.63181 * 9 6 4 37 37 H 1.09002 * 109.49483 * 181.31546 * 10 9 6 38 38 H 1.08997 * 109.49846 * 301.38223 * 10 9 6 39 39 H 1.08998 * 109.51153 * 185.70263 * 11 10 9 40 40 H 1.09007 * 109.43407 * 65.42756 * 11 10 9 41 41 H 0.97001 * 120.00152 * 4.94610 * 15 13 12 42 42 H 1.09001 * 109.46929 * 300.00619 * 16 15 13 43 43 H 1.08998 * 109.46674 * 59.99678 * 16 15 13 44 44 H 0.96994 * 120.00040 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5626 1.4450 -0.1513 5 1 3.9415 2.4579 -0.0149 6 6 4.1843 0.5156 0.8959 7 1 3.7348 -0.4743 0.8164 8 6 3.9308 1.0807 2.2949 9 6 5.6915 0.4141 0.6514 10 6 5.9461 -0.1816 -0.7352 11 6 5.3440 0.7346 -1.7990 12 7 3.9254 0.9593 -1.4896 13 6 2.9745 0.7192 -2.4141 14 8 1.8008 0.8607 -2.1300 15 7 3.3245 0.3170 -3.6519 16 6 2.3007 0.1603 -4.6881 17 6 2.9488 -0.2959 -5.9698 18 1 4.0166 -0.4531 -6.0088 19 6 2.1787 -0.5117 -7.0929 20 7 0.8785 -0.3198 -7.0455 21 14 2.9822 -1.0766 -8.6819 22 1 4.4455 -1.2183 -8.4734 23 1 2.4113 -2.3863 -9.0869 24 1 2.7283 -0.0749 -9.7483 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7674 1.9242 0.9389 31 1 1.5914 1.9864 -0.8312 32 1 2.8571 1.1554 2.4676 33 1 4.3729 0.4189 3.0396 34 1 4.3813 2.0700 2.3743 35 1 6.1362 1.4077 0.7069 36 1 6.1401 -0.2274 1.4099 37 1 7.0197 -0.2753 -0.8993 38 1 5.4811 -1.1653 -0.7995 39 1 5.4344 0.2642 -2.7781 40 1 5.8735 1.6874 -1.7989 41 1 4.2542 0.1311 -3.8567 42 1 1.5693 -0.5814 -4.3670 43 1 1.8015 1.1152 -4.8527 44 1 0.3367 -0.4720 -7.8355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787365862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:32 Heat of formation + Delta-G solvation = -19.736616 kcal Electronic energy + Delta-G solvation = -22172.607561 eV Core-core repulsion = 19125.455221 eV Total energy + Delta-G solvation = -3047.152340 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.56185 -37.50515 -35.40743 -33.75279 -32.99339 -32.06522 -31.35783 -28.02956 -26.65769 -26.09668 -23.96716 -22.37173 -22.12291 -21.17288 -19.73613 -18.93414 -17.48179 -16.10837 -15.69108 -15.33927 -14.86727 -14.75481 -14.60210 -14.32970 -13.55757 -13.44716 -13.15810 -13.01352 -12.56261 -12.43675 -12.24735 -11.95559 -11.81491 -11.70641 -11.49455 -11.28470 -11.15076 -10.92083 -10.88047 -10.70858 -10.62884 -10.23039 -10.16503 -10.09306 -9.81639 -9.31480 -8.65961 -8.40722 -8.06600 -7.61804 -6.13373 -4.19357 3.24985 3.25928 3.32885 3.36305 3.96402 4.33332 4.61112 4.80098 4.81250 4.89969 5.05084 5.22980 5.30438 5.41070 5.43799 5.50676 5.56743 5.64938 5.69173 5.73147 5.81761 5.89387 5.94516 6.06518 6.08016 6.10647 6.15698 6.23580 6.32415 6.48650 6.60399 6.75650 6.83654 7.01164 7.15684 7.28094 7.58107 7.61835 7.66756 7.92194 8.06885 8.80790 8.97594 9.39782 9.54765 10.96880 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.005123 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.743577 B = 5463.877970 C = 6344.421969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 C -0.118 4.118 4 C 0.173 3.827 5 H 0.060 0.940 6 C -0.109 4.109 7 H 0.080 0.920 8 C -0.143 4.143 9 C -0.112 4.112 10 C -0.135 4.135 11 C 0.113 3.887 12 N -0.633 5.633 13 C 0.691 3.309 14 O -0.576 6.576 15 N -0.733 5.733 16 C 0.268 3.732 17 C -0.540 4.540 18 H 0.061 0.939 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.902 3.098 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.030 0.970 30 H 0.040 0.960 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.383 0.617 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.268 2.041 15.919 18.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 C -0.155 4.155 4 C 0.069 3.931 5 H 0.078 0.922 6 C -0.129 4.129 7 H 0.098 0.902 8 C -0.201 4.201 9 C -0.150 4.150 10 C -0.174 4.174 11 C -0.011 4.011 12 N -0.372 5.372 13 C 0.393 3.607 14 O -0.456 6.456 15 N -0.387 5.387 16 C 0.147 3.853 17 C -0.578 4.578 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.729 3.271 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.081 0.919 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.217 0.783 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.196 2.149 15.938 18.050 hybrid contribution 0.953 -0.459 -1.013 1.465 sum 9.149 1.690 14.925 17.587 Atomic orbital electron populations 1.21619 0.96717 1.00259 1.01027 1.21649 0.95557 0.96519 1.00204 1.22212 0.92628 0.99135 1.01499 1.21034 0.96419 0.95331 0.80305 0.92235 1.21675 0.95495 1.00821 0.94863 0.90177 1.21788 1.02028 1.00597 0.95709 1.21563 0.95973 1.00865 0.96575 1.21849 1.00604 0.99699 0.95215 1.21444 0.82068 0.99044 0.98528 1.47287 1.05291 1.71597 1.13048 1.16080 0.84715 0.79031 0.80838 1.90868 1.16864 1.59374 1.78508 1.46015 1.12219 1.70547 1.09949 1.18931 0.86188 0.97010 0.83193 1.21263 0.94278 1.47132 0.95166 0.92099 1.24930 0.94778 0.95209 0.99050 1.69987 1.04557 1.47949 1.29804 0.86389 0.79388 0.78368 0.82919 1.19700 1.20840 1.20837 0.91870 0.94184 0.94518 0.90313 0.95128 0.94163 0.87267 0.92113 0.92877 0.92863 0.92096 0.92126 0.91076 0.91500 0.90190 0.92038 0.78252 0.95761 0.95960 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.78 37.16 0.36 -1.90 16 2 C -0.10 -1.68 4.10 -26.74 -0.11 -1.78 16 3 C -0.12 -1.82 4.06 -26.73 -0.11 -1.93 16 4 C 0.17 2.39 2.67 -67.60 -0.18 2.21 16 5 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.11 -1.24 1.94 -90.50 -0.18 -1.42 16 7 H 0.08 1.04 6.14 -51.93 -0.32 0.72 16 8 C -0.14 -1.37 8.97 37.16 0.33 -1.04 16 9 C -0.11 -1.10 5.17 -26.69 -0.14 -1.24 16 10 C -0.14 -1.41 6.06 -26.83 -0.16 -1.57 16 11 C 0.11 1.41 6.38 -3.93 -0.03 1.38 16 12 N -0.63 -9.89 2.94 -171.17 -0.50 -10.39 16 13 C 0.69 13.91 7.16 -86.92 -0.62 13.29 16 14 O -0.58 -12.95 9.22 5.29 0.05 -12.90 16 15 N -0.73 -15.73 5.46 -66.41 -0.36 -16.09 16 16 C 0.27 7.13 5.43 -5.19 -0.03 7.10 16 17 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 18 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 20 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H 0.06 1.17 7.62 -51.93 -0.40 0.78 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 1.55 5.28 -51.93 -0.27 1.28 16 29 H 0.03 0.45 6.59 -51.93 -0.34 0.11 16 30 H 0.04 0.55 7.01 -51.93 -0.36 0.18 16 31 H 0.11 2.06 5.73 -53.15 -0.30 1.76 16 32 H 0.06 0.61 6.79 -51.93 -0.35 0.26 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.02 5.60 -51.93 -0.29 0.73 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.38 7.27 5.79 -40.82 -0.24 7.03 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -29.94 328.37 -8.91 -38.85 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.49 Total: 5.33 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.27 Total: -0.25 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.13 Total: -51.90 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.05 Total: -12.90 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.94 -8.91 -38.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787365862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.115 kcal (2) G-P(sol) polarization free energy of solvation -29.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds