Wall clock time and date at job start Mon Mar 30 2020 00:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47594 * 2 1 4 4 C 1.53000 * 109.47386 * 186.02013 * 3 2 1 5 5 H 1.09004 * 109.58346 * 187.70575 * 4 3 2 6 6 C 1.53196 * 109.58526 * 308.12649 * 4 3 2 7 7 H 1.09001 * 109.49559 * 54.44070 * 6 4 3 8 8 C 1.52998 * 109.49762 * 294.37469 * 6 4 3 9 9 C 1.53035 * 109.31114 * 174.42247 * 6 4 3 10 10 C 1.53042 * 109.53955 * 298.63666 * 9 6 4 11 11 C 1.52761 * 109.38284 * 61.24041 * 10 9 6 12 12 N 1.46923 * 109.58625 * 67.41773 * 4 3 2 13 13 C 1.34771 * 120.63163 * 6.58456 * 12 4 3 14 14 O 1.21589 * 120.00188 * 357.49639 * 13 12 4 15 15 N 1.34775 * 119.99820 * 177.77043 * 13 12 4 16 16 C 1.46507 * 120.00255 * 184.94114 * 15 13 12 17 17 C 1.50693 * 109.47478 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99838 * 359.97438 * 17 16 15 19 19 C 1.37875 * 120.00271 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99777 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00311 * 179.97438 * 19 17 16 22 22 H 1.48491 * 109.47060 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47163 * 119.99993 * 21 19 17 24 24 H 1.48500 * 109.47347 * 239.99931 * 21 19 17 25 25 H 1.09005 * 109.47105 * 60.00055 * 1 2 3 26 26 H 1.08998 * 109.47271 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46912 * 300.00504 * 1 2 3 28 28 H 1.09007 * 109.47220 * 239.99524 * 2 1 3 29 29 H 1.09005 * 109.47105 * 119.99945 * 2 1 3 30 30 H 1.08999 * 109.47226 * 66.01901 * 3 2 1 31 31 H 1.09004 * 109.46941 * 306.01865 * 3 2 1 32 32 H 1.09001 * 109.47247 * 60.00314 * 8 6 4 33 33 H 1.08994 * 109.46829 * 179.97438 * 8 6 4 34 34 H 1.08996 * 109.47301 * 300.00066 * 8 6 4 35 35 H 1.08997 * 109.46355 * 58.65596 * 9 6 4 36 36 H 1.09000 * 109.46215 * 178.63181 * 9 6 4 37 37 H 1.09002 * 109.49483 * 181.31546 * 10 9 6 38 38 H 1.08997 * 109.49846 * 301.38223 * 10 9 6 39 39 H 1.08998 * 109.51153 * 185.70263 * 11 10 9 40 40 H 1.09007 * 109.43407 * 65.42756 * 11 10 9 41 41 H 0.97001 * 120.00152 * 4.94610 * 15 13 12 42 42 H 1.09001 * 109.46929 * 300.00619 * 16 15 13 43 43 H 1.08998 * 109.46674 * 59.99678 * 16 15 13 44 44 H 0.96994 * 120.00040 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5626 1.4450 -0.1513 5 1 3.9415 2.4579 -0.0149 6 6 4.1843 0.5156 0.8959 7 1 3.7348 -0.4743 0.8164 8 6 3.9308 1.0807 2.2949 9 6 5.6915 0.4141 0.6514 10 6 5.9461 -0.1816 -0.7352 11 6 5.3440 0.7346 -1.7990 12 7 3.9254 0.9593 -1.4896 13 6 2.9745 0.7192 -2.4141 14 8 1.8008 0.8607 -2.1300 15 7 3.3245 0.3170 -3.6519 16 6 2.3007 0.1603 -4.6881 17 6 2.9488 -0.2959 -5.9698 18 1 4.0166 -0.4531 -6.0088 19 6 2.1787 -0.5117 -7.0929 20 7 0.8785 -0.3198 -7.0455 21 14 2.9822 -1.0766 -8.6819 22 1 4.4455 -1.2183 -8.4734 23 1 2.4113 -2.3863 -9.0869 24 1 2.7283 -0.0749 -9.7483 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7674 1.9242 0.9389 31 1 1.5914 1.9864 -0.8312 32 1 2.8571 1.1554 2.4676 33 1 4.3729 0.4189 3.0396 34 1 4.3813 2.0700 2.3743 35 1 6.1362 1.4077 0.7069 36 1 6.1401 -0.2274 1.4099 37 1 7.0197 -0.2753 -0.8993 38 1 5.4811 -1.1653 -0.7995 39 1 5.4344 0.2642 -2.7781 40 1 5.8735 1.6874 -1.7989 41 1 4.2542 0.1311 -3.8567 42 1 1.5693 -0.5814 -4.3670 43 1 1.8015 1.1152 -4.8527 44 1 0.3367 -0.4720 -7.8355 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787365862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:32 Heat of formation + Delta-G solvation = -38.152855 kcal Electronic energy + Delta-G solvation = -22173.406149 eV Core-core repulsion = 19125.455221 eV Total energy + Delta-G solvation = -3047.950928 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.90893 -38.83489 -36.85400 -35.50905 -34.22925 -33.93929 -32.45876 -29.62022 -28.23038 -27.09120 -25.43518 -24.13212 -23.31989 -22.22229 -21.22003 -20.28403 -18.96092 -17.95904 -17.22743 -16.76378 -16.43361 -16.23289 -15.76732 -15.39814 -15.00567 -14.74706 -14.59289 -14.27758 -14.05984 -13.81232 -13.57644 -13.32841 -13.24032 -13.01461 -12.77669 -12.74219 -12.57026 -12.29549 -12.18925 -12.17377 -11.72190 -11.58634 -11.41607 -11.37964 -11.25850 -11.02894 -10.74199 -9.98316 -9.59365 -9.22761 -8.27710 -6.43691 1.42611 1.44037 1.57180 1.90100 2.36973 2.39226 3.07288 3.25050 3.84540 3.87068 3.90326 4.11044 4.22175 4.28034 4.38629 4.42158 4.59462 4.61018 4.74863 4.82894 4.87847 4.89597 4.93796 4.97716 5.07347 5.08266 5.16054 5.21886 5.27563 5.31701 5.33043 5.37813 5.42608 5.50390 5.52088 5.61147 5.65019 5.83857 5.91301 6.02675 6.24542 6.69263 7.26472 7.31921 7.89105 8.84719 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024604 B = 0.005123 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.743577 B = 5463.877970 C = 6344.421969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 C -0.113 4.113 4 C 0.168 3.832 5 H 0.075 0.925 6 C -0.103 4.103 7 H 0.061 0.939 8 C -0.139 4.139 9 C -0.108 4.108 10 C -0.129 4.129 11 C 0.104 3.896 12 N -0.625 5.625 13 C 0.684 3.316 14 O -0.606 6.606 15 N -0.732 5.732 16 C 0.291 3.709 17 C -0.553 4.553 18 H 0.079 0.921 19 C 0.005 3.995 20 N -0.930 5.930 21 Si 0.984 3.016 22 H -0.254 1.254 23 H -0.279 1.279 24 H -0.278 1.278 25 H 0.028 0.972 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.396 0.604 42 H -0.018 1.018 43 H -0.017 1.017 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.354 1.983 17.202 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C -0.150 4.150 4 C 0.065 3.935 5 H 0.093 0.907 6 C -0.122 4.122 7 H 0.079 0.921 8 C -0.197 4.197 9 C -0.145 4.145 10 C -0.168 4.168 11 C -0.018 4.018 12 N -0.363 5.363 13 C 0.386 3.614 14 O -0.488 6.488 15 N -0.389 5.389 16 C 0.168 3.832 17 C -0.591 4.591 18 H 0.097 0.903 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.807 3.193 22 H -0.177 1.177 23 H -0.205 1.205 24 H -0.204 1.204 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.233 0.767 42 H 0.000 1.000 43 H 0.001 0.999 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.347 2.101 17.278 20.778 hybrid contribution -0.046 -0.404 -1.315 1.376 sum 11.301 1.697 15.964 19.633 Atomic orbital electron populations 1.21588 0.96939 1.00289 1.00537 1.21514 0.95377 0.97064 0.99234 1.22030 0.93966 0.97960 1.01016 1.21269 0.95418 0.96866 0.79961 0.90700 1.21606 0.96572 0.99045 0.95025 0.92059 1.21764 1.01920 1.01542 0.94479 1.21566 0.94515 1.02064 0.96403 1.21827 1.01857 0.98163 0.94922 1.21746 0.80132 1.00744 0.99185 1.47337 1.05921 1.70302 1.12750 1.16302 0.85187 0.78895 0.81033 1.90891 1.18619 1.60229 1.79030 1.45656 1.11799 1.71608 1.09830 1.18289 0.86547 0.93557 0.84814 1.21619 0.95186 1.47013 0.95295 0.90317 1.26030 0.95226 0.94918 1.03255 1.70150 1.06528 1.49048 1.31181 0.85130 0.79091 0.77670 0.77429 1.17741 1.20463 1.20370 0.95282 0.93930 0.91931 0.94173 0.92891 0.91694 0.91247 0.92753 0.91347 0.91593 0.90621 0.90295 0.88310 0.93112 0.90883 0.89894 0.76696 0.99981 0.99930 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.78 71.98 0.70 -3.89 16 2 C -0.09 -3.18 4.10 30.59 0.13 -3.05 16 3 C -0.11 -3.50 4.06 30.59 0.12 -3.37 16 4 C 0.17 4.42 2.67 44.98 0.12 4.54 16 5 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 6 C -0.10 -2.08 1.94 -10.72 -0.02 -2.10 16 7 H 0.06 1.49 6.14 -2.39 -0.01 1.47 16 8 C -0.14 -2.17 8.97 71.98 0.65 -1.52 16 9 C -0.11 -1.70 5.17 30.62 0.16 -1.54 16 10 C -0.13 -2.32 6.06 30.53 0.19 -2.13 16 11 C 0.10 2.41 6.38 86.22 0.55 2.96 16 12 N -0.63 -19.37 2.94 -813.71 -2.39 -21.76 16 13 C 0.68 28.82 7.16 179.06 1.28 30.10 16 14 O -0.61 -29.26 9.22 -3.99 -0.04 -29.30 16 15 N -0.73 -32.86 5.46 -482.30 -2.63 -35.49 16 16 C 0.29 16.48 5.43 85.63 0.47 16.95 16 17 C -0.55 -30.83 9.28 25.60 0.24 -30.59 16 18 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 19 C 0.01 0.29 5.46 84.65 0.46 0.75 16 20 N -0.93 -56.95 13.29 21.45 0.28 -56.67 16 21 Si 0.98 42.96 29.54 68.60 2.03 44.99 16 22 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H 0.03 1.15 7.62 -2.38 -0.02 1.13 16 26 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.04 1.66 5.28 -2.38 -0.01 1.65 16 29 H 0.05 1.52 6.59 -2.38 -0.02 1.50 16 30 H 0.06 1.68 7.01 -2.39 -0.02 1.66 16 31 H 0.07 2.76 5.73 -21.80 -0.12 2.63 16 32 H 0.05 0.92 6.79 -2.39 -0.02 0.90 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.78 5.60 -2.39 -0.01 1.77 16 40 H 0.08 1.60 8.14 -2.38 -0.02 1.59 16 41 H 0.40 15.29 5.79 -92.71 -0.54 14.75 16 42 H -0.02 -1.14 8.14 -2.39 -0.02 -1.15 16 43 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 44 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -69.58 328.37 2.62 -66.96 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.33 Total: 24.16 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 5.04 Total: 7.10 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -4.74 Total: -113.91 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.04 Total: -29.30 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -69.58 2.62 -66.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787365862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.805 kcal (2) G-P(sol) polarization free energy of solvation -69.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds