Wall clock time and date at job start Mon Mar 30 2020 00:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47042 * 2 1 4 4 C 1.52998 * 109.46776 * 184.44311 * 3 2 1 5 5 H 1.08998 * 109.59083 * 301.54153 * 4 3 2 6 6 C 1.53188 * 109.70847 * 61.90346 * 4 3 2 7 7 H 1.09005 * 109.49684 * 294.44352 * 6 4 3 8 8 C 1.53001 * 109.49734 * 54.50175 * 6 4 3 9 9 C 1.53040 * 109.31557 * 174.49189 * 6 4 3 10 10 C 1.53042 * 109.53351 * 298.63340 * 9 6 4 11 11 C 1.53189 * 109.31427 * 61.36821 * 10 9 6 12 12 N 1.46928 * 108.77332 * 305.36033 * 11 10 9 13 13 C 1.34770 * 120.63141 * 233.88206 * 12 11 10 14 14 O 1.21588 * 120.00095 * 174.30369 * 13 12 11 15 15 N 1.34779 * 120.00288 * 354.30432 * 13 12 11 16 16 C 1.46497 * 120.00553 * 175.03657 * 15 13 12 17 17 C 1.50696 * 109.47395 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99876 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00401 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99738 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47478 * 60.00216 * 21 19 17 23 23 H 1.48504 * 109.47125 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46960 * 299.99773 * 21 19 17 25 25 H 1.09003 * 109.47259 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46931 * 299.99414 * 1 2 3 27 27 H 1.09000 * 109.47172 * 59.99982 * 1 2 3 28 28 H 1.08999 * 109.46901 * 239.99801 * 2 1 3 29 29 H 1.09000 * 109.47172 * 120.00018 * 2 1 3 30 30 H 1.09001 * 109.46622 * 64.44277 * 3 2 1 31 31 H 1.08993 * 109.47151 * 304.44219 * 3 2 1 32 32 H 1.09008 * 109.46813 * 60.00087 * 8 6 4 33 33 H 1.08994 * 109.47239 * 179.97438 * 8 6 4 34 34 H 1.08998 * 109.47537 * 300.00639 * 8 6 4 35 35 H 1.08997 * 109.46043 * 58.64949 * 9 6 4 36 36 H 1.09000 * 109.46027 * 178.61671 * 9 6 4 37 37 H 1.09000 * 109.49795 * 181.32022 * 10 9 6 38 38 H 1.08999 * 109.49947 * 301.37763 * 10 9 6 39 39 H 1.08998 * 109.58472 * 185.58093 * 11 10 9 40 40 H 1.08994 * 109.58659 * 65.15092 * 11 10 9 41 41 H 0.97003 * 119.99620 * 355.04529 * 15 13 12 42 42 H 1.09004 * 109.47489 * 300.00516 * 16 15 13 43 43 H 1.09001 * 109.46704 * 60.00185 * 16 15 13 44 44 H 0.96999 * 120.00252 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5659 1.4439 -0.1117 5 1 3.9937 0.8846 0.7202 6 6 3.9875 0.7983 -1.4354 7 1 3.7105 -0.2560 -1.4304 8 6 3.2840 1.5056 -2.5955 9 6 5.5034 0.9273 -1.6013 10 6 5.8896 2.4076 -1.6413 11 6 5.4897 3.0715 -0.3200 12 7 4.0606 2.8271 -0.0816 13 6 3.2187 3.8525 0.1549 14 8 2.0236 3.6488 0.2478 15 7 3.7013 5.1038 0.2883 16 6 2.7795 6.2327 0.4365 17 6 3.5671 7.5107 0.5674 18 1 4.6465 7.4847 0.5422 19 6 2.9098 8.7131 0.7193 20 7 1.5955 8.7447 0.7505 21 14 3.8862 10.2974 0.8808 22 1 4.7163 10.4935 -0.3348 23 1 2.9518 11.4416 1.0324 24 1 4.7668 10.2167 2.0738 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7430 1.9328 0.9271 31 1 1.6131 1.9788 -0.8475 32 1 3.5622 2.5595 -2.6007 33 1 3.5846 1.0462 -3.5371 34 1 2.2045 1.4154 -2.4751 35 1 6.0030 0.4442 -0.7616 36 1 5.8092 0.4469 -2.5308 37 1 6.9665 2.4989 -1.7830 38 1 5.3716 2.8966 -2.4663 39 1 5.6716 4.1445 -0.3805 40 1 6.0744 2.6449 0.4949 41 1 4.6592 5.2569 0.2860 42 1 2.1334 6.2917 -0.4394 43 1 2.1698 6.0891 1.3286 44 1 1.1330 9.5906 0.8577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787365873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:37 Heat of formation + Delta-G solvation = -35.215477 kcal Electronic energy + Delta-G solvation = -21968.506355 eV Core-core repulsion = 18920.682801 eV Total energy + Delta-G solvation = -3047.823554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.46275 -37.60029 -35.27174 -33.92666 -33.10516 -32.08489 -31.20900 -27.97013 -26.74525 -26.23620 -24.13940 -22.93504 -22.05094 -20.81271 -19.75523 -18.63074 -17.45372 -16.00019 -15.84425 -15.45551 -15.17574 -14.68946 -14.29731 -14.05222 -13.88658 -13.53050 -13.38484 -13.16256 -12.84833 -12.49040 -12.03958 -11.87733 -11.82949 -11.79944 -11.49290 -11.20941 -11.06663 -10.90990 -10.89406 -10.83764 -10.79034 -10.46849 -10.23829 -10.19166 -10.01444 -9.34292 -8.67527 -8.50720 -8.16291 -7.64691 -6.12519 -4.18892 3.25337 3.27244 3.32404 3.34982 3.97970 4.33522 4.60025 4.78127 4.85958 4.95027 5.07474 5.20130 5.23475 5.27249 5.29774 5.43651 5.49406 5.54314 5.69403 5.74422 5.83031 5.84968 5.89942 5.93229 6.02191 6.09747 6.13094 6.17356 6.20860 6.23087 6.38250 6.50057 6.73909 6.80769 7.13980 7.25742 7.56851 7.61939 7.63675 7.92171 8.07133 8.80446 8.97587 9.39403 9.54233 10.97668 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.004950 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.721441 B = 5655.236169 C = 6560.342310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.108 4.108 4 C 0.172 3.828 5 H 0.059 0.941 6 C -0.104 4.104 7 H 0.077 0.923 8 C -0.145 4.145 9 C -0.112 4.112 10 C -0.137 4.137 11 C 0.113 3.887 12 N -0.633 5.633 13 C 0.696 3.304 14 O -0.589 6.589 15 N -0.732 5.732 16 C 0.268 3.732 17 C -0.541 4.541 18 H 0.060 0.940 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.276 1.276 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.384 0.616 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.344 -16.934 -4.236 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.146 4.146 4 C 0.068 3.932 5 H 0.077 0.923 6 C -0.124 4.124 7 H 0.095 0.905 8 C -0.202 4.202 9 C -0.150 4.150 10 C -0.175 4.175 11 C -0.011 4.011 12 N -0.372 5.372 13 C 0.398 3.602 14 O -0.469 6.469 15 N -0.386 5.386 16 C 0.147 3.853 17 C -0.580 4.580 18 H 0.078 0.922 19 C -0.139 4.139 20 N -0.523 5.523 21 Si 0.730 3.270 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.218 0.782 42 H 0.040 0.960 43 H 0.042 0.958 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.267 -16.873 -4.145 18.471 hybrid contribution 1.084 1.008 0.058 1.482 sum 7.351 -15.865 -4.087 17.957 Atomic orbital electron populations 1.21692 0.96049 1.00519 1.02157 1.21778 0.96049 0.98448 1.00890 1.22222 0.92253 0.93938 1.06141 1.21019 0.95748 0.80895 0.95564 0.92283 1.21569 0.95100 0.99757 0.95937 0.90486 1.21865 1.00745 1.01085 0.96532 1.21527 0.95684 0.96284 1.01498 1.21960 1.00908 0.96294 0.98373 1.21542 0.82059 1.00845 0.96684 1.47305 1.07496 1.05758 1.76666 1.16122 0.84993 0.80746 0.78380 1.90893 1.13977 1.82664 1.59335 1.45976 1.10569 1.05782 1.76315 1.18931 0.88445 0.80760 0.97190 1.21187 0.93149 0.91383 1.52267 0.92167 1.24927 0.94937 0.99213 0.94849 1.69965 1.06960 1.26815 1.48572 0.86496 0.79613 0.82233 0.78668 1.20120 1.21087 1.20114 0.93567 0.92695 0.92847 0.92586 0.92912 0.89237 0.89943 0.92122 0.93504 0.92150 0.92110 0.92089 0.91235 0.91019 0.90109 0.92072 0.78208 0.95970 0.95768 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.91 37.16 0.37 -1.41 16 2 C -0.13 -1.63 5.74 -26.73 -0.15 -1.78 16 3 C -0.11 -1.68 2.69 -26.73 -0.07 -1.75 16 4 C 0.17 2.37 2.69 -67.60 -0.18 2.19 16 5 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.10 -1.18 2.34 -90.50 -0.21 -1.39 16 7 H 0.08 0.77 6.70 -51.93 -0.35 0.43 16 8 C -0.15 -1.82 8.21 37.16 0.31 -1.51 16 9 C -0.11 -1.10 5.43 -26.69 -0.14 -1.24 16 10 C -0.14 -1.44 5.74 -26.61 -0.15 -1.60 16 11 C 0.11 1.41 6.35 -3.71 -0.02 1.39 16 12 N -0.63 -10.00 2.41 -170.91 -0.41 -10.41 16 13 C 0.70 14.43 8.21 -86.92 -0.71 13.71 16 14 O -0.59 -14.02 11.75 5.29 0.06 -13.96 16 15 N -0.73 -15.99 5.41 -66.42 -0.36 -16.35 16 16 C 0.27 7.23 5.43 -5.20 -0.03 7.20 16 17 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 18 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 19 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 20 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 21 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.61 6.40 -51.93 -0.33 0.28 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 1.69 6.37 -51.93 -0.33 1.36 16 31 H 0.08 1.48 5.21 -51.93 -0.27 1.21 16 32 H 0.06 0.89 5.97 -51.92 -0.31 0.58 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.81 6.32 -51.93 -0.33 0.48 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.85 6.34 -51.93 -0.33 0.52 16 39 H 0.08 1.04 5.75 -51.93 -0.30 0.74 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.38 7.35 5.92 -40.82 -0.24 7.11 16 42 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -30.78 329.79 -8.85 -39.63 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.40 Total: 5.39 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -1.43 Total: 0.34 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.04 Total: -52.34 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: 0.06 Total: -13.96 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.78 -8.85 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787365873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.411 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds