Wall clock time and date at job start Mon Mar 30 2020 00:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47042 * 2 1 4 4 C 1.52998 * 109.46776 * 184.44311 * 3 2 1 5 5 H 1.08998 * 109.59083 * 301.54153 * 4 3 2 6 6 C 1.53188 * 109.70847 * 61.90346 * 4 3 2 7 7 H 1.09005 * 109.49684 * 294.44352 * 6 4 3 8 8 C 1.53001 * 109.49734 * 54.50175 * 6 4 3 9 9 C 1.53040 * 109.31557 * 174.49189 * 6 4 3 10 10 C 1.53042 * 109.53351 * 298.63340 * 9 6 4 11 11 C 1.53189 * 109.31427 * 61.36821 * 10 9 6 12 12 N 1.46928 * 108.77332 * 305.36033 * 11 10 9 13 13 C 1.34770 * 120.63141 * 233.88206 * 12 11 10 14 14 O 1.21588 * 120.00095 * 174.30369 * 13 12 11 15 15 N 1.34779 * 120.00288 * 354.30432 * 13 12 11 16 16 C 1.46497 * 120.00553 * 175.03657 * 15 13 12 17 17 C 1.50696 * 109.47395 * 179.97438 * 16 15 13 18 18 H 1.07994 * 119.99963 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99876 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00401 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99738 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47478 * 60.00216 * 21 19 17 23 23 H 1.48504 * 109.47125 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46960 * 299.99773 * 21 19 17 25 25 H 1.09003 * 109.47259 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46931 * 299.99414 * 1 2 3 27 27 H 1.09000 * 109.47172 * 59.99982 * 1 2 3 28 28 H 1.08999 * 109.46901 * 239.99801 * 2 1 3 29 29 H 1.09000 * 109.47172 * 120.00018 * 2 1 3 30 30 H 1.09001 * 109.46622 * 64.44277 * 3 2 1 31 31 H 1.08993 * 109.47151 * 304.44219 * 3 2 1 32 32 H 1.09008 * 109.46813 * 60.00087 * 8 6 4 33 33 H 1.08994 * 109.47239 * 179.97438 * 8 6 4 34 34 H 1.08998 * 109.47537 * 300.00639 * 8 6 4 35 35 H 1.08997 * 109.46043 * 58.64949 * 9 6 4 36 36 H 1.09000 * 109.46027 * 178.61671 * 9 6 4 37 37 H 1.09000 * 109.49795 * 181.32022 * 10 9 6 38 38 H 1.08999 * 109.49947 * 301.37763 * 10 9 6 39 39 H 1.08998 * 109.58472 * 185.58093 * 11 10 9 40 40 H 1.08994 * 109.58659 * 65.15092 * 11 10 9 41 41 H 0.97003 * 119.99620 * 355.04529 * 15 13 12 42 42 H 1.09004 * 109.47489 * 300.00516 * 16 15 13 43 43 H 1.09001 * 109.46704 * 60.00185 * 16 15 13 44 44 H 0.96999 * 120.00252 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5659 1.4439 -0.1117 5 1 3.9937 0.8846 0.7202 6 6 3.9875 0.7983 -1.4354 7 1 3.7105 -0.2560 -1.4304 8 6 3.2840 1.5056 -2.5955 9 6 5.5034 0.9273 -1.6013 10 6 5.8896 2.4076 -1.6413 11 6 5.4897 3.0715 -0.3200 12 7 4.0606 2.8271 -0.0816 13 6 3.2187 3.8525 0.1549 14 8 2.0236 3.6488 0.2478 15 7 3.7013 5.1038 0.2883 16 6 2.7795 6.2327 0.4365 17 6 3.5671 7.5107 0.5674 18 1 4.6465 7.4847 0.5422 19 6 2.9098 8.7131 0.7193 20 7 1.5955 8.7447 0.7505 21 14 3.8862 10.2974 0.8808 22 1 4.7163 10.4935 -0.3348 23 1 2.9518 11.4416 1.0324 24 1 4.7668 10.2167 2.0738 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7430 1.9328 0.9271 31 1 1.6131 1.9788 -0.8475 32 1 3.5622 2.5595 -2.6007 33 1 3.5846 1.0462 -3.5371 34 1 2.2045 1.4154 -2.4751 35 1 6.0030 0.4442 -0.7616 36 1 5.8092 0.4469 -2.5308 37 1 6.9665 2.4989 -1.7830 38 1 5.3716 2.8966 -2.4663 39 1 5.6716 4.1445 -0.3805 40 1 6.0744 2.6449 0.4949 41 1 4.6592 5.2569 0.2860 42 1 2.1334 6.2917 -0.4394 43 1 2.1698 6.0891 1.3286 44 1 1.1330 9.5906 0.8577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787365873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:36 Heat of formation + Delta-G solvation = -54.029438 kcal Electronic energy + Delta-G solvation = -21969.322189 eV Core-core repulsion = 18920.682801 eV Total energy + Delta-G solvation = -3048.639388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80822 -39.02147 -36.63148 -35.68678 -34.49172 -33.88402 -32.23696 -29.58694 -28.29083 -27.28006 -25.50229 -24.48677 -23.42415 -21.99044 -21.17577 -20.03853 -18.85877 -17.90807 -17.26035 -16.89217 -16.45621 -16.29794 -15.53878 -15.37451 -15.15218 -14.81234 -14.60521 -14.35513 -14.26375 -13.93011 -13.81808 -13.55952 -12.98402 -12.90303 -12.83240 -12.70179 -12.60131 -12.29401 -12.16114 -12.10085 -11.84890 -11.75213 -11.52726 -11.45581 -11.24106 -11.04871 -10.76989 -10.09997 -9.80772 -9.25121 -8.28136 -6.44942 1.42327 1.47090 1.55084 1.86305 2.32165 2.38811 3.06499 3.22214 3.77977 3.84943 3.92861 4.12275 4.20253 4.23734 4.29450 4.39904 4.53388 4.60336 4.68350 4.74977 4.81374 4.90386 4.95966 5.04240 5.06242 5.07066 5.09562 5.13298 5.24287 5.28248 5.29104 5.31889 5.36879 5.48780 5.50997 5.56190 5.61017 5.79569 5.87311 5.96402 6.20730 6.67006 7.24689 7.28059 7.82162 8.84032 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022617 B = 0.004950 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.721441 B = 5655.236169 C = 6560.342310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.100 4.100 4 C 0.165 3.835 5 H 0.079 0.921 6 C -0.097 4.097 7 H 0.102 0.898 8 C -0.142 4.142 9 C -0.108 4.108 10 C -0.133 4.133 11 C 0.103 3.897 12 N -0.623 5.623 13 C 0.689 3.311 14 O -0.629 6.629 15 N -0.730 5.730 16 C 0.290 3.710 17 C -0.556 4.556 18 H 0.080 0.920 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.986 3.014 22 H -0.262 1.262 23 H -0.284 1.284 24 H -0.262 1.262 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.398 0.602 42 H -0.019 1.019 43 H -0.018 1.018 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.682 -18.533 -4.715 21.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.138 4.138 4 C 0.062 3.938 5 H 0.097 0.903 6 C -0.116 4.116 7 H 0.120 0.880 8 C -0.199 4.199 9 C -0.145 4.145 10 C -0.171 4.171 11 C -0.019 4.019 12 N -0.361 5.361 13 C 0.390 3.610 14 O -0.511 6.511 15 N -0.386 5.386 16 C 0.166 3.834 17 C -0.593 4.593 18 H 0.098 0.902 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.808 3.192 22 H -0.186 1.186 23 H -0.210 1.210 24 H -0.187 1.187 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.235 0.765 42 H -0.001 1.001 43 H 0.000 1.000 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.673 -18.537 -4.639 21.417 hybrid contribution -0.009 1.425 0.197 1.438 sum 9.663 -17.112 -4.441 20.148 Atomic orbital electron populations 1.21713 0.96348 1.01729 1.00793 1.21704 0.95809 0.96044 1.02638 1.21941 0.93913 0.95570 1.02372 1.21301 0.94450 0.79905 0.98177 0.90286 1.21570 0.96539 1.00340 0.93169 0.87985 1.21826 0.99851 0.99777 0.98481 1.21536 0.93925 0.95648 1.03380 1.21944 1.02375 0.96685 0.96064 1.21875 0.79869 1.01083 0.99083 1.47348 1.08482 1.05302 1.74965 1.16368 0.85080 0.81278 0.78228 1.90897 1.16111 1.83382 1.60728 1.45607 1.10554 1.05302 1.77156 1.18312 0.88605 0.83071 0.93363 1.21550 0.94118 0.91458 1.52218 0.90151 1.26060 0.95965 1.03523 0.93904 1.70139 1.09252 1.28045 1.49509 0.85201 0.77932 0.76574 0.79455 1.18603 1.20989 1.18677 0.90947 0.94402 0.94007 0.90353 0.91300 0.93593 0.93260 0.94948 0.91286 0.93939 0.90240 0.90055 0.88416 0.92844 0.90935 0.89503 0.76476 1.00073 1.00013 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.12 -2.89 5.74 30.59 0.18 -2.71 16 3 C -0.10 -3.22 2.69 30.59 0.08 -3.14 16 4 C 0.16 4.36 2.69 44.97 0.12 4.49 16 5 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 6 C -0.10 -1.92 2.34 -10.72 -0.03 -1.94 16 7 H 0.10 1.59 6.70 -2.38 -0.02 1.57 16 8 C -0.14 -3.44 8.21 71.98 0.59 -2.85 16 9 C -0.11 -1.62 5.43 30.62 0.17 -1.46 16 10 C -0.13 -2.39 5.74 30.67 0.18 -2.21 16 11 C 0.10 2.38 6.35 86.36 0.55 2.93 16 12 N -0.62 -19.66 2.41 -812.92 -1.96 -21.62 16 13 C 0.69 30.13 8.21 179.06 1.47 31.60 16 14 O -0.63 -32.51 11.75 -3.99 -0.05 -32.55 16 15 N -0.73 -33.43 5.41 -482.31 -2.61 -36.04 16 16 C 0.29 16.68 5.43 85.63 0.47 17.15 16 17 C -0.56 -31.17 9.28 25.60 0.24 -30.94 16 18 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 19 C 0.01 0.29 5.46 84.66 0.46 0.75 16 20 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 21 Si 0.99 42.99 29.54 68.60 2.03 45.02 16 22 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 28 H 0.08 1.50 6.40 -2.39 -0.02 1.48 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.86 6.37 -2.39 -0.02 1.85 16 31 H 0.05 1.90 5.21 -2.39 -0.01 1.89 16 32 H 0.03 0.96 5.97 -2.38 -0.01 0.94 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.04 1.16 6.32 -2.39 -0.02 1.15 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.05 1.18 6.34 -2.39 -0.02 1.17 16 39 H 0.07 1.79 5.75 -2.39 -0.01 1.77 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.40 15.52 5.92 -92.71 -0.55 14.97 16 42 H -0.02 -1.21 8.14 -2.39 -0.02 -1.22 16 43 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 44 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -72.71 329.79 3.31 -69.40 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.43 Total: 24.09 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 5.18 Total: 8.77 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -4.28 Total: -114.72 kcal Atomic # 8 Polarization: -32.51 SS G_CDS: -0.05 Total: -32.55 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -72.71 3.31 -69.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787365873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.375 kcal (2) G-P(sol) polarization free energy of solvation -72.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds