Wall clock time and date at job start Mon Mar 30 2020 00:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47315 * 2 1 4 4 C 1.52996 * 109.47562 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46921 * 55.00146 * 4 3 2 6 6 C 1.53003 * 109.47038 * 295.00323 * 4 3 2 7 7 C 1.52999 * 109.47080 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47127 * 59.99611 * 7 6 4 9 9 C 1.52994 * 109.47486 * 300.00237 * 8 7 6 10 10 C 1.52995 * 109.47275 * 175.00156 * 4 3 2 11 11 H 1.09000 * 109.47537 * 60.00490 * 10 4 3 12 12 N 1.46502 * 109.46898 * 299.99898 * 10 4 3 13 13 C 1.34782 * 119.99706 * 155.00180 * 12 10 4 14 14 O 1.21586 * 119.99799 * 0.02562 * 13 12 10 15 15 N 1.34771 * 119.99751 * 180.02562 * 13 12 10 16 16 C 1.46503 * 119.99737 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46825 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00803 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99889 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00186 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00030 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99863 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00044 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00037 * 21 19 17 25 25 H 1.09003 * 109.47735 * 300.00013 * 1 2 3 26 26 H 1.09002 * 109.46865 * 59.99956 * 1 2 3 27 27 H 1.09000 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47256 * 239.99811 * 2 1 3 29 29 H 1.09002 * 109.46865 * 120.00044 * 2 1 3 30 30 H 1.09003 * 109.46730 * 59.99371 * 3 2 1 31 31 H 1.08992 * 109.47268 * 299.99978 * 3 2 1 32 32 H 1.09003 * 109.47119 * 299.99701 * 6 4 3 33 33 H 1.09001 * 109.47551 * 60.00064 * 6 4 3 34 34 H 1.08997 * 109.47621 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47212 * 300.00026 * 7 6 4 36 36 H 1.09003 * 109.46735 * 60.00124 * 8 7 6 37 37 H 1.08993 * 109.47480 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47141 * 300.00230 * 9 8 7 39 39 H 1.08994 * 109.47613 * 179.97438 * 9 8 7 40 40 H 0.96994 * 120.00458 * 335.00141 * 12 10 4 41 41 H 0.96997 * 120.00373 * 0.02562 * 15 13 12 42 42 H 1.09004 * 109.46958 * 60.00450 * 16 15 13 43 43 H 1.08997 * 109.47731 * 300.00126 * 16 15 13 44 44 H 0.96998 * 120.00124 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0794 0.8330 1.3083 7 6 5.6094 0.8325 1.3087 8 6 6.1200 2.2693 1.1826 9 6 5.6105 2.8788 -0.1249 10 6 4.0800 2.8795 -0.1250 11 1 3.7164 3.4691 0.7166 12 7 3.5922 3.4630 -1.3772 13 6 3.4635 4.7997 -1.4925 14 8 3.7527 5.5212 -0.5576 15 7 3.0142 5.3365 -2.6442 16 6 2.8739 6.7894 -2.7694 17 6 2.3568 7.1274 -4.1440 18 1 2.1528 6.3390 -4.8533 19 6 2.1443 8.4434 -4.4962 20 7 1.6926 8.7385 -5.6956 21 14 2.4979 9.8073 -3.2698 22 1 3.9062 10.2542 -3.4188 23 1 2.2826 9.3009 -1.8905 24 1 1.5859 10.9512 -3.5249 25 1 -0.3635 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7158 1.4226 2.1499 33 1 3.7161 -0.1907 1.3979 34 1 5.9725 0.3987 2.2404 35 1 5.9728 0.2427 0.4671 36 1 5.7566 2.8591 2.0242 37 1 7.2099 2.2691 1.1834 38 1 5.9738 2.2890 -0.9665 39 1 5.9738 3.9025 -0.2145 40 1 3.3618 2.8875 -2.1231 41 1 2.7831 4.7609 -3.3899 42 1 3.8444 7.2624 -2.6194 43 1 2.1725 7.1528 -2.0183 44 1 1.5434 9.6643 -5.9435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787366345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:59 Heat of formation + Delta-G solvation = -73.757051 kcal Electronic energy + Delta-G solvation = -21069.710105 eV Core-core repulsion = 18020.215263 eV Total energy + Delta-G solvation = -3049.494842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.01355 -38.35306 -35.03459 -34.30295 -33.75384 -32.27547 -30.93070 -29.56958 -27.48532 -25.98626 -23.19158 -22.37450 -21.45632 -20.67709 -20.23416 -19.91866 -18.06005 -16.40478 -16.21772 -15.40939 -14.98310 -14.84834 -14.42802 -14.31740 -14.08781 -13.76882 -13.38309 -13.29238 -12.99710 -12.78673 -12.67472 -12.29797 -12.15074 -11.92437 -11.54336 -11.27344 -11.23910 -11.05608 -10.95610 -10.80549 -10.74393 -10.56849 -10.38646 -10.05927 -9.93176 -9.50049 -9.40370 -8.76273 -8.68217 -7.95144 -6.17941 -4.19464 3.28839 3.32509 3.39149 3.46220 3.87903 4.37210 4.42658 4.57405 4.69528 4.84407 4.92636 5.04245 5.08419 5.13944 5.17702 5.18878 5.35620 5.39725 5.45395 5.50309 5.59472 5.61191 5.73708 5.74921 5.89199 5.93118 5.98574 6.01367 6.04132 6.12380 6.17410 6.25220 6.32055 6.41159 6.80236 6.92626 7.16218 7.30322 7.46824 7.65076 8.32773 8.74439 8.87197 9.28743 9.44794 10.94109 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.004177 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.656738 B = 6701.188737 C = 7589.412674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.116 4.116 4 C -0.093 4.093 5 H 0.073 0.927 6 C -0.111 4.111 7 C -0.120 4.120 8 C -0.117 4.117 9 C -0.131 4.131 10 C 0.172 3.828 11 H 0.085 0.915 12 N -0.750 5.750 13 C 0.695 3.305 14 O -0.604 6.604 15 N -0.724 5.724 16 C 0.239 3.761 17 C -0.541 4.541 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.894 5.894 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.260 1.260 24 H -0.284 1.284 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.391 0.609 41 H 0.391 0.609 42 H 0.017 0.983 43 H 0.022 0.978 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.894 -19.694 12.515 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.154 4.154 4 C -0.112 4.112 5 H 0.091 0.909 6 C -0.149 4.149 7 C -0.158 4.158 8 C -0.155 4.155 9 C -0.170 4.170 10 C 0.066 3.934 11 H 0.103 0.897 12 N -0.405 5.405 13 C 0.395 3.605 14 O -0.484 6.484 15 N -0.377 5.377 16 C 0.116 3.884 17 C -0.579 4.579 18 H 0.097 0.903 19 C -0.126 4.126 20 N -0.532 5.532 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.184 1.184 24 H -0.210 1.210 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.224 0.776 41 H 0.224 0.776 42 H 0.035 0.965 43 H 0.040 0.960 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.081 -18.806 13.236 23.356 hybrid contribution -0.056 0.301 -0.320 0.443 sum 4.025 -18.504 12.916 22.922 Atomic orbital electron populations 1.21782 0.96035 1.01290 1.02020 1.21573 0.95738 0.97031 1.01776 1.21664 0.94362 0.96542 1.02838 1.21439 0.95555 0.95481 0.98688 0.90861 1.21590 0.95410 1.00829 0.97081 1.21570 0.95650 0.97021 1.01548 1.21495 1.00160 0.95825 0.97995 1.21970 0.95877 1.01709 0.97426 1.20710 0.92897 0.92683 0.87081 0.89733 1.45209 1.72863 1.05691 1.16779 1.16131 0.78726 0.81721 0.83930 1.90851 1.58068 1.60012 1.39468 1.45395 1.68858 1.10034 1.13365 1.19332 0.96326 0.75212 0.97526 1.21108 1.45476 0.94163 0.97176 0.90341 1.24782 0.94051 0.98543 0.95254 1.69885 1.44822 1.19328 1.19136 0.86814 0.78716 0.81617 0.82523 1.19875 1.18440 1.20963 0.92822 0.92627 0.93046 0.92214 0.92014 0.91893 0.91409 0.91730 0.91500 0.92132 0.92054 0.91820 0.92043 0.92129 0.91188 0.77591 0.77570 0.96460 0.96005 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.00 5.69 -26.73 -0.15 -1.15 16 3 C -0.12 -1.13 4.60 -26.73 -0.12 -1.25 16 4 C -0.09 -0.87 1.76 -90.62 -0.16 -1.03 16 5 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 6 C -0.11 -0.92 4.96 -26.73 -0.13 -1.05 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 8 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 9 C -0.13 -1.59 5.50 -26.71 -0.15 -1.74 16 10 C 0.17 2.19 1.90 -67.90 -0.13 2.06 16 11 H 0.08 1.29 7.58 -51.93 -0.39 0.89 16 12 N -0.75 -10.84 4.31 -58.65 -0.25 -11.10 16 13 C 0.70 13.86 8.53 -86.92 -0.74 13.11 16 14 O -0.60 -14.45 16.01 5.29 0.08 -14.37 16 15 N -0.72 -15.18 5.55 -66.41 -0.37 -15.55 16 16 C 0.24 6.05 4.50 -5.19 -0.02 6.02 16 17 C -0.54 -15.09 9.83 -34.44 -0.34 -15.43 16 18 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 19 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 20 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 21 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.73 7.30 -51.93 -0.38 0.35 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.48 6.56 -51.93 -0.34 0.14 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.39 4.64 8.41 -40.82 -0.34 4.30 16 41 H 0.39 7.21 8.34 -40.82 -0.34 6.87 16 42 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 43 H 0.02 0.59 7.20 -51.93 -0.37 0.21 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 344.06 15.07 5.18 5.18 Total: -1.00 -32.10 344.06 -9.22 -41.32 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -7.98 Total: 5.10 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -1.99 Total: -1.68 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: 0.15 Total: -52.69 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.08 Total: -14.37 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.10 -9.22 -41.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787366345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.439 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds