Wall clock time and date at job start Mon Mar 30 2020 00:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47315 * 2 1 4 4 C 1.52996 * 109.47562 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46921 * 55.00146 * 4 3 2 6 6 C 1.53003 * 109.47038 * 295.00323 * 4 3 2 7 7 C 1.52999 * 109.47080 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47127 * 59.99611 * 7 6 4 9 9 C 1.52994 * 109.47486 * 300.00237 * 8 7 6 10 10 C 1.52995 * 109.47275 * 175.00156 * 4 3 2 11 11 H 1.09000 * 109.47537 * 60.00490 * 10 4 3 12 12 N 1.46502 * 109.46898 * 299.99898 * 10 4 3 13 13 C 1.34782 * 119.99706 * 155.00180 * 12 10 4 14 14 O 1.21586 * 119.99799 * 0.02562 * 13 12 10 15 15 N 1.34771 * 119.99751 * 180.02562 * 13 12 10 16 16 C 1.46503 * 119.99737 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46825 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00803 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99889 * 180.02562 * 17 16 15 20 20 N 1.31520 * 120.00186 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00030 * 0.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 89.99863 * 21 19 17 23 23 H 1.48503 * 109.47261 * 330.00044 * 21 19 17 24 24 H 1.48500 * 109.47454 * 210.00037 * 21 19 17 25 25 H 1.09003 * 109.47735 * 300.00013 * 1 2 3 26 26 H 1.09002 * 109.46865 * 59.99956 * 1 2 3 27 27 H 1.09000 * 109.46987 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47256 * 239.99811 * 2 1 3 29 29 H 1.09002 * 109.46865 * 120.00044 * 2 1 3 30 30 H 1.09003 * 109.46730 * 59.99371 * 3 2 1 31 31 H 1.08992 * 109.47268 * 299.99978 * 3 2 1 32 32 H 1.09003 * 109.47119 * 299.99701 * 6 4 3 33 33 H 1.09001 * 109.47551 * 60.00064 * 6 4 3 34 34 H 1.08997 * 109.47621 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47212 * 300.00026 * 7 6 4 36 36 H 1.09003 * 109.46735 * 60.00124 * 8 7 6 37 37 H 1.08993 * 109.47480 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47141 * 300.00230 * 9 8 7 39 39 H 1.08994 * 109.47613 * 179.97438 * 9 8 7 40 40 H 0.96994 * 120.00458 * 335.00141 * 12 10 4 41 41 H 0.96997 * 120.00373 * 0.02562 * 15 13 12 42 42 H 1.09004 * 109.46958 * 60.00450 * 16 15 13 43 43 H 1.08997 * 109.47731 * 300.00126 * 16 15 13 44 44 H 0.96998 * 120.00124 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8410 6 6 4.0794 0.8330 1.3083 7 6 5.6094 0.8325 1.3087 8 6 6.1200 2.2693 1.1826 9 6 5.6105 2.8788 -0.1249 10 6 4.0800 2.8795 -0.1250 11 1 3.7164 3.4691 0.7166 12 7 3.5922 3.4630 -1.3772 13 6 3.4635 4.7997 -1.4925 14 8 3.7527 5.5212 -0.5576 15 7 3.0142 5.3365 -2.6442 16 6 2.8739 6.7894 -2.7694 17 6 2.3568 7.1274 -4.1440 18 1 2.1528 6.3390 -4.8533 19 6 2.1443 8.4434 -4.4962 20 7 1.6926 8.7385 -5.6956 21 14 2.4979 9.8073 -3.2698 22 1 3.9062 10.2542 -3.4188 23 1 2.2826 9.3009 -1.8905 24 1 1.5859 10.9512 -3.5249 25 1 -0.3635 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.7158 1.4226 2.1499 33 1 3.7161 -0.1907 1.3979 34 1 5.9725 0.3987 2.2404 35 1 5.9728 0.2427 0.4671 36 1 5.7566 2.8591 2.0242 37 1 7.2099 2.2691 1.1834 38 1 5.9738 2.2890 -0.9665 39 1 5.9738 3.9025 -0.2145 40 1 3.3618 2.8875 -2.1231 41 1 2.7831 4.7609 -3.3899 42 1 3.8444 7.2624 -2.6194 43 1 2.1725 7.1528 -2.0183 44 1 1.5434 9.6643 -5.9435 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787366345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:58 Heat of formation + Delta-G solvation = -94.568281 kcal Electronic energy + Delta-G solvation = -21070.612548 eV Core-core repulsion = 18020.215263 eV Total energy + Delta-G solvation = -3050.397284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29911 -39.59828 -36.19001 -35.73660 -35.12675 -34.33534 -31.69324 -30.84797 -29.22752 -26.82752 -24.50666 -23.65182 -22.63212 -21.77884 -21.37591 -20.96913 -19.71510 -18.28606 -17.63171 -16.46654 -16.42627 -16.14013 -15.98600 -15.29943 -15.15253 -15.02498 -14.76522 -14.41979 -14.27710 -14.05846 -13.92438 -13.69069 -13.35518 -13.01864 -12.75290 -12.70313 -12.27702 -12.11966 -11.94742 -11.93186 -11.83496 -11.66067 -11.55248 -11.37592 -11.30422 -11.10178 -10.91681 -10.86134 -10.19639 -9.60951 -8.39976 -6.46575 1.32892 1.34702 1.48387 1.89791 2.24490 2.28751 2.95654 3.48247 3.59869 3.79062 3.94355 4.12436 4.25338 4.30835 4.37060 4.40342 4.50683 4.57079 4.60956 4.74255 4.77023 4.81999 4.90221 5.02244 5.05127 5.06389 5.13888 5.15544 5.22690 5.24924 5.25683 5.31697 5.35588 5.41647 5.46056 5.53289 5.55924 5.59635 5.71575 6.00693 6.30889 6.55542 7.14993 7.29540 7.70830 8.74809 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.004177 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.656738 B = 6701.188737 C = 7589.412674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 C -0.115 4.115 4 C -0.081 4.081 5 H 0.090 0.910 6 C -0.109 4.109 7 C -0.115 4.115 8 C -0.115 4.115 9 C -0.127 4.127 10 C 0.169 3.831 11 H 0.055 0.945 12 N -0.727 5.727 13 C 0.695 3.305 14 O -0.645 6.645 15 N -0.724 5.724 16 C 0.253 3.747 17 C -0.545 4.545 18 H 0.059 0.941 19 C 0.028 3.972 20 N -0.931 5.931 21 Si 0.937 3.063 22 H -0.265 1.265 23 H -0.263 1.263 24 H -0.271 1.271 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.407 0.593 41 H 0.404 0.596 42 H 0.007 0.993 43 H 0.008 0.992 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 -21.771 13.455 25.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.153 4.153 4 C -0.100 4.100 5 H 0.109 0.891 6 C -0.147 4.147 7 C -0.152 4.152 8 C -0.153 4.153 9 C -0.166 4.166 10 C 0.064 3.936 11 H 0.074 0.926 12 N -0.383 5.383 13 C 0.394 3.606 14 O -0.528 6.528 15 N -0.377 5.377 16 C 0.128 3.872 17 C -0.583 4.583 18 H 0.077 0.923 19 C -0.172 4.172 20 N -0.570 5.570 21 Si 0.761 3.239 22 H -0.190 1.190 23 H -0.187 1.187 24 H -0.196 1.196 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.052 0.948 40 H 0.243 0.757 41 H 0.239 0.761 42 H 0.025 0.975 43 H 0.026 0.974 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.718 -20.954 14.162 25.727 hybrid contribution -0.266 0.879 -0.630 1.113 sum 4.452 -20.075 13.532 24.616 Atomic orbital electron populations 1.21801 0.96353 1.01861 1.01343 1.21535 0.95433 0.95683 1.02846 1.21640 0.94521 0.97673 1.01481 1.21392 0.95271 0.93006 1.00348 0.89126 1.21606 0.95665 1.01685 0.95722 1.21551 0.95267 0.95486 1.02923 1.21492 1.00745 0.97011 0.96023 1.21918 0.95153 1.00024 0.99522 1.20907 0.93492 0.94262 0.84933 0.92630 1.45063 1.71362 1.03771 1.18097 1.16248 0.78276 0.83165 0.82861 1.90821 1.59724 1.61552 1.40711 1.45117 1.69473 1.08677 1.14442 1.18916 0.95067 0.77680 0.95522 1.21273 1.45233 0.93955 0.97857 0.92256 1.25562 0.93853 1.00937 0.96870 1.69977 1.45911 1.20264 1.20807 0.85868 0.79125 0.79018 0.79932 1.18964 1.18702 1.19629 0.93313 0.93566 0.91845 0.91249 0.90711 0.93267 0.92874 0.92504 0.89327 0.90526 0.90892 0.92881 0.91092 0.90752 0.94848 0.75664 0.76098 0.97500 0.97409 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.12 -1.59 5.69 30.59 0.17 -1.42 16 3 C -0.12 -2.06 4.60 30.59 0.14 -1.92 16 4 C -0.08 -1.36 1.76 -10.80 -0.02 -1.37 16 5 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 6 C -0.11 -1.48 4.96 30.60 0.15 -1.33 16 7 C -0.11 -1.49 5.92 30.59 0.18 -1.31 16 8 C -0.11 -2.08 5.92 30.59 0.18 -1.90 16 9 C -0.13 -3.01 5.50 30.61 0.17 -2.84 16 10 C 0.17 4.20 1.90 45.01 0.09 4.29 16 11 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 12 N -0.73 -20.71 4.31 -457.73 -1.97 -22.68 16 13 C 0.69 27.96 8.53 179.05 1.53 29.49 16 14 O -0.65 -31.61 16.01 -3.99 -0.06 -31.67 16 15 N -0.72 -30.54 5.55 -482.29 -2.68 -33.22 16 16 C 0.25 12.93 4.50 85.63 0.38 13.32 16 17 C -0.55 -30.79 9.83 25.60 0.25 -30.54 16 18 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 19 C 0.03 1.62 5.47 84.65 0.46 2.08 16 20 N -0.93 -56.18 13.96 21.45 0.30 -55.88 16 21 Si 0.94 45.04 27.47 68.60 1.88 46.92 16 22 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.26 -12.66 6.54 99.48 0.65 -12.01 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.07 0.84 6.56 -2.39 -0.02 0.83 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.10 7.30 -2.39 -0.02 1.08 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.89 6.56 -2.39 -0.02 0.87 16 34 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.41 9.09 8.41 -92.71 -0.78 8.31 16 41 H 0.40 14.85 8.34 -92.71 -0.77 14.08 16 42 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 43 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 44 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -69.98 344.06 1.24 -68.75 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -0.64 Total: 22.84 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 4.40 Total: 4.94 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -4.35 Total: -111.78 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.06 Total: -31.67 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.92 kcal Total: -69.98 1.24 -68.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787366345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.822 kcal (2) G-P(sol) polarization free energy of solvation -69.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds