Wall clock time and date at job start Mon Mar 30 2020 00:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47226 * 2 1 4 4 C 1.53008 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46875 * 304.99686 * 4 3 2 6 6 C 1.52999 * 109.47307 * 64.99747 * 4 3 2 7 7 C 1.52992 * 109.47018 * 185.65188 * 6 4 3 8 8 C 1.50702 * 109.46817 * 184.99677 * 4 3 2 9 9 O 1.21281 * 120.00092 * 261.20645 * 8 4 3 10 10 N 1.34780 * 119.99793 * 81.20745 * 8 4 3 11 11 C 1.46960 * 120.59429 * 4.32923 * 10 8 4 12 12 C 1.53813 * 108.39936 * 124.75435 * 11 10 8 13 13 N 1.46969 * 108.57788 * 49.63984 * 12 11 10 14 14 C 1.36935 * 120.59910 * 124.62508 * 13 12 11 15 15 H 1.08002 * 119.99627 * 321.27424 * 14 13 12 16 16 C 1.38808 * 120.00144 * 141.26999 * 14 13 12 17 17 N 1.31627 * 120.00188 * 355.63041 * 16 14 13 18 18 Si 1.86800 * 119.99952 * 175.62880 * 16 14 13 19 19 H 1.48495 * 109.47394 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47141 * 120.00167 * 18 16 14 21 21 H 1.48497 * 109.47181 * 239.99925 * 18 16 14 22 22 C 1.46965 * 118.80916 * 304.64515 * 13 12 11 23 23 C 1.46965 * 120.59179 * 184.60705 * 10 8 4 24 24 H 1.09006 * 109.46886 * 60.00567 * 1 2 3 25 25 H 1.09000 * 109.47515 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47731 * 300.00547 * 1 2 3 27 27 H 1.09003 * 109.46391 * 119.99472 * 2 1 3 28 28 H 1.08996 * 109.47226 * 239.99430 * 2 1 3 29 29 H 1.09003 * 109.47005 * 299.99096 * 3 2 1 30 30 H 1.08996 * 109.47483 * 59.99588 * 3 2 1 31 31 H 1.09001 * 109.47059 * 305.65264 * 6 4 3 32 32 H 1.09003 * 109.46806 * 65.65349 * 6 4 3 33 33 H 1.08999 * 109.47012 * 184.54595 * 7 6 4 34 34 H 1.09003 * 109.47616 * 304.54798 * 7 6 4 35 35 H 1.09004 * 109.47194 * 64.54593 * 7 6 4 36 36 H 1.09000 * 109.61305 * 244.53467 * 11 10 8 37 37 H 1.08999 * 109.61312 * 5.05308 * 11 10 8 38 38 H 1.08999 * 109.74838 * 289.85409 * 12 11 10 39 39 H 1.09001 * 109.53594 * 169.30138 * 12 11 10 40 40 H 0.97003 * 119.99679 * 179.97438 * 17 16 14 41 41 H 1.09008 * 109.61125 * 295.48220 * 22 13 12 42 42 H 1.09007 * 109.75242 * 175.05543 * 22 13 12 43 43 H 1.09004 * 109.61060 * 354.94560 * 23 10 8 44 44 H 1.09002 * 109.61149 * 115.46167 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8325 -1.3063 7 6 5.6039 0.7027 -1.2477 8 6 4.0723 2.8578 0.1244 9 8 4.4263 3.4643 -0.8644 10 7 4.1282 3.4497 1.3340 11 6 3.7930 2.6973 2.5511 12 6 4.9812 2.7919 3.5232 13 7 5.3726 4.2030 3.6481 14 6 5.4286 4.8047 4.8770 15 1 4.6822 4.5777 5.6238 16 6 6.4447 5.7062 5.1627 17 7 7.4026 5.9182 4.2852 18 14 6.4526 6.6186 6.7927 19 1 5.2752 6.2048 7.5974 20 1 7.6975 6.2949 7.5351 21 1 6.3921 8.0809 6.5417 22 6 5.7025 4.9570 2.4305 23 6 4.5197 4.8607 1.4589 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8932 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.6768 1.9562 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 3.6370 -0.1535 -1.4449 32 1 3.8027 1.4765 -2.1407 33 1 5.9752 0.3440 -2.2077 34 1 6.0434 1.6759 -1.0287 35 1 5.8785 -0.0043 -0.4648 36 1 2.9038 3.1263 3.0131 37 1 3.6087 1.6535 2.2968 38 1 5.8199 2.2125 3.1372 39 1 4.6854 2.4066 4.4990 40 1 8.1124 6.5485 4.4848 41 1 6.5926 4.5316 1.9667 42 1 5.8851 6.0018 2.6822 43 1 4.8156 5.2460 0.4831 44 1 3.6811 5.4402 1.8449 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820145198.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:46 Heat of formation + Delta-G solvation = -35.004781 kcal Electronic energy + Delta-G solvation = -21828.943978 eV Core-core repulsion = 18781.129560 eV Total energy + Delta-G solvation = -3047.814417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.97394 -37.05295 -36.00863 -33.83766 -32.97384 -31.15949 -30.48835 -29.02909 -26.87936 -24.69109 -23.55908 -23.02448 -22.19656 -21.13975 -19.86664 -18.33196 -17.31109 -16.19353 -15.42906 -15.29483 -14.94406 -14.82165 -14.03491 -13.95766 -13.62830 -13.37039 -13.26257 -13.22289 -13.15744 -12.74859 -12.21117 -12.05088 -11.74386 -11.69778 -11.33069 -11.16941 -11.09384 -10.92208 -10.81027 -10.69603 -10.56287 -10.50488 -10.42021 -10.20112 -10.07363 -9.81089 -9.12824 -8.56199 -8.17308 -6.55198 -5.85453 -3.43812 3.06165 3.32276 3.39833 3.41580 3.52154 4.41770 4.62981 4.73747 4.85103 5.02763 5.09977 5.16428 5.33498 5.35438 5.42677 5.47895 5.61462 5.69177 5.73566 5.75353 5.79830 5.82121 5.85837 5.92492 6.02889 6.06231 6.13284 6.19452 6.24286 6.34510 6.39391 6.42718 6.45836 6.55502 6.74278 6.92022 7.30678 7.57551 7.73654 7.99639 8.44125 8.66804 9.14724 9.72459 10.35755 11.21310 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027542 B = 0.004711 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.392331 B = 5942.722971 C = 6445.016453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.109 4.109 5 H 0.092 0.908 6 C -0.105 4.105 7 C -0.154 4.154 8 C 0.514 3.486 9 O -0.555 6.555 10 N -0.596 5.596 11 C 0.087 3.913 12 C 0.131 3.869 13 N -0.590 5.590 14 C -0.263 4.263 15 H 0.063 0.937 16 C 0.014 3.986 17 N -0.899 5.899 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.163 3.837 23 C 0.085 3.915 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.023 0.977 39 H 0.066 0.934 40 H 0.256 0.744 41 H 0.023 0.977 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.236 -11.233 -7.453 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.131 4.131 5 H 0.110 0.890 6 C -0.143 4.143 7 C -0.211 4.211 8 C 0.302 3.698 9 O -0.434 6.434 10 N -0.328 5.328 11 C -0.038 4.038 12 C 0.004 3.996 13 N -0.313 5.313 14 C -0.393 4.393 15 H 0.081 0.919 16 C -0.186 4.186 17 N -0.542 5.542 18 Si 0.734 3.266 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.215 1.215 22 C 0.037 3.963 23 C -0.038 4.038 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.041 0.959 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.885 -10.774 -7.924 16.630 hybrid contribution 0.156 0.537 0.999 1.145 sum -9.728 -10.237 -6.924 15.728 Atomic orbital electron populations 1.21771 0.95880 1.01445 1.01894 1.21582 0.95768 0.96449 1.02304 1.21534 0.92766 0.97438 1.02867 1.21445 0.96792 0.94320 1.00510 0.89011 1.21414 0.96172 1.00194 0.96491 1.21794 0.95860 1.02375 1.01110 1.20515 0.77982 0.88411 0.82891 1.90623 1.49766 1.66116 1.36922 1.48070 1.66168 1.12727 1.05864 1.22524 0.99865 0.95105 0.86265 1.21387 0.93421 0.88268 0.96537 1.43856 1.79987 1.04504 1.02946 1.19144 1.06566 1.22547 0.91046 0.91933 1.25410 0.94900 1.00793 0.97525 1.69955 1.12728 1.36775 1.34727 0.86202 0.77568 0.79308 0.83543 1.20105 1.21466 1.21474 1.21111 0.91219 0.99077 0.84880 1.22502 0.99895 0.80100 1.01343 0.92825 0.92842 0.92673 0.91800 0.91593 0.91453 0.91409 0.91523 0.91004 0.92915 0.91932 0.93173 0.91807 0.90766 0.95931 0.91593 0.93418 0.95877 0.88980 0.90304 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.08 5.70 -26.74 -0.15 -1.23 16 3 C -0.11 -1.20 4.55 -26.73 -0.12 -1.32 16 4 C -0.11 -1.43 1.35 -91.77 -0.12 -1.55 16 5 H 0.09 1.12 6.29 -51.93 -0.33 0.79 16 6 C -0.11 -1.29 4.95 -26.74 -0.13 -1.42 16 7 C -0.15 -2.01 9.75 37.15 0.36 -1.65 16 8 C 0.51 9.01 6.10 -10.98 -0.07 8.94 16 9 O -0.56 -11.47 14.52 5.56 0.08 -11.39 16 10 N -0.60 -10.94 2.94 -172.21 -0.51 -11.45 16 11 C 0.09 1.43 6.02 -3.37 -0.02 1.41 16 12 C 0.13 2.63 6.69 -3.36 -0.02 2.61 16 13 N -0.59 -14.49 2.93 -171.75 -0.50 -14.99 16 14 C -0.26 -7.02 9.50 -15.06 -0.14 -7.16 16 15 H 0.06 1.63 7.83 -52.49 -0.41 1.22 16 16 C 0.01 0.38 5.15 -17.43 -0.09 0.29 16 17 N -0.90 -25.78 11.24 55.49 0.62 -25.15 16 18 Si 0.90 21.17 29.56 -169.99 -5.02 16.14 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.16 3.94 5.41 -3.59 -0.02 3.92 16 23 C 0.09 1.75 6.60 -3.59 -0.02 1.72 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.55 6.45 -51.93 -0.33 0.21 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 31 H 0.07 0.66 6.32 -51.93 -0.33 0.33 16 32 H 0.07 0.98 7.68 -51.93 -0.40 0.58 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 1.01 6.70 -51.93 -0.35 0.66 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.98 5.38 -51.93 -0.28 0.70 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.02 0.61 8.14 -51.92 -0.42 0.18 16 42 H 0.09 2.44 6.41 -51.93 -0.33 2.11 16 43 H 0.08 1.64 6.99 -51.93 -0.36 1.27 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -30.36 337.73 -8.14 -38.50 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -7.72 Total: -0.46 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.19 Total: 3.71 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.39 Total: -51.59 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.36 -8.14 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820145198.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.500 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds