Wall clock time and date at job start Mon Mar 30 2020 00:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46880 * 2 1 4 4 C 1.53001 * 109.47166 * 183.43717 * 3 2 1 5 5 H 1.09009 * 109.46666 * 54.80347 * 4 3 2 6 6 C 1.53004 * 109.47196 * 294.80850 * 4 3 2 7 7 C 1.53000 * 109.46791 * 297.48421 * 6 4 3 8 8 C 1.50689 * 109.47187 * 174.80215 * 4 3 2 9 9 O 1.21285 * 120.00534 * 6.73066 * 8 4 3 10 10 N 1.34781 * 120.00153 * 186.73287 * 8 4 3 11 11 C 1.46965 * 120.58958 * 3.02410 * 10 8 4 12 12 C 1.53818 * 108.39453 * 124.76336 * 11 10 8 13 13 N 1.46970 * 108.57821 * 49.64026 * 12 11 10 14 14 C 1.36930 * 120.59413 * 124.66846 * 13 12 11 15 15 H 1.08006 * 119.99731 * 208.91752 * 14 13 12 16 16 C 1.38814 * 120.00372 * 28.92304 * 14 13 12 17 17 N 1.31624 * 119.99737 * 17.36432 * 16 14 13 18 18 Si 1.86796 * 120.00445 * 197.36877 * 16 14 13 19 19 H 1.48497 * 109.47257 * 89.99442 * 18 16 14 20 20 H 1.48501 * 109.47280 * 210.00074 * 18 16 14 21 21 H 1.48500 * 109.46786 * 329.99737 * 18 16 14 22 22 C 1.46971 * 118.80981 * 304.64431 * 13 12 11 23 23 C 1.46961 * 120.59815 * 183.31551 * 10 8 4 24 24 H 1.08996 * 109.46941 * 59.99610 * 1 2 3 25 25 H 1.09005 * 109.47125 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46996 * 299.99946 * 1 2 3 27 27 H 1.08995 * 109.46877 * 240.00048 * 2 1 3 28 28 H 1.09002 * 109.46976 * 119.99961 * 2 1 3 29 29 H 1.09008 * 109.47008 * 63.44196 * 3 2 1 30 30 H 1.08995 * 109.47159 * 303.44200 * 3 2 1 31 31 H 1.08998 * 109.47138 * 57.48367 * 6 4 3 32 32 H 1.08996 * 109.46691 * 177.49025 * 6 4 3 33 33 H 1.08998 * 109.47340 * 185.33886 * 7 6 4 34 34 H 1.09003 * 109.47538 * 305.34405 * 7 6 4 35 35 H 1.09000 * 109.47266 * 65.33635 * 7 6 4 36 36 H 1.08997 * 109.61786 * 244.54390 * 11 10 8 37 37 H 1.09002 * 109.61107 * 5.06106 * 11 10 8 38 38 H 1.09000 * 109.74242 * 289.85199 * 12 11 10 39 39 H 1.09002 * 109.53568 * 169.30244 * 12 11 10 40 40 H 0.96994 * 119.99981 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.60808 * 295.48776 * 22 13 12 42 42 H 1.08995 * 109.74952 * 175.05478 * 22 13 12 43 43 H 1.09002 * 109.60569 * 354.94273 * 23 10 8 44 44 H 1.09000 * 109.61119 * 115.45419 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5676 1.4435 -0.0865 5 1 3.8825 0.8682 -0.9572 6 6 4.1505 0.8125 1.1796 7 6 3.7604 1.6553 2.3955 8 6 4.0625 2.8609 -0.2151 9 8 3.2853 3.7864 -0.1132 10 7 5.3691 3.1004 -0.4434 11 6 6.3109 1.9886 -0.6349 12 6 7.0331 2.1902 -1.9780 13 7 7.5426 3.5676 -2.0336 14 6 8.8700 3.8109 -2.2654 15 1 9.3338 4.7007 -1.8658 16 6 9.6197 2.9140 -3.0141 17 7 9.0158 2.0292 -3.7790 18 14 11.4854 2.9625 -2.9362 19 1 11.9589 2.0682 -1.8495 20 1 12.0470 2.5062 -4.2330 21 1 11.9333 4.3520 -2.6643 22 6 6.6017 4.6793 -1.8364 23 6 5.8786 4.4778 -0.4989 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7279 1.9383 0.9193 30 1 1.6272 1.9738 -0.8575 31 1 3.7574 -0.1974 1.2964 32 1 5.2367 0.7726 1.0986 33 1 4.2529 1.2608 3.2842 34 1 4.0706 2.6881 2.2364 35 1 2.6796 1.6177 2.5321 36 1 7.0382 1.9811 0.1769 37 1 5.7652 1.0452 -0.6493 38 1 6.3360 2.0246 -2.7994 39 1 7.8645 1.4893 -2.0536 40 1 9.5395 1.4022 -4.3018 41 1 5.8739 4.6908 -2.6477 42 1 7.1457 5.6236 -1.8195 43 1 5.0472 5.1786 -0.4234 44 1 6.5757 4.6434 0.3225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820145199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:48 Heat of formation + Delta-G solvation = -30.899839 kcal Electronic energy + Delta-G solvation = -21897.345768 eV Core-core repulsion = 18849.709354 eV Total energy + Delta-G solvation = -3047.636414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06584 -37.12043 -36.05851 -33.92702 -32.92135 -31.24955 -30.16974 -28.81955 -26.99122 -25.08659 -23.80549 -22.71065 -22.59421 -20.95293 -19.56068 -18.35069 -16.97326 -16.13216 -15.77196 -15.58970 -14.91657 -14.76987 -14.17562 -13.77274 -13.70613 -13.57157 -13.27322 -13.20192 -13.02529 -12.58957 -12.22612 -12.04136 -11.86455 -11.59553 -11.34746 -11.18139 -10.98976 -10.92047 -10.83571 -10.76280 -10.59365 -10.44596 -10.33956 -10.22163 -10.00360 -9.83912 -9.16915 -8.60149 -8.19743 -6.71349 -5.87196 -3.32056 3.06920 3.33033 3.40314 3.41385 3.50550 4.43012 4.69258 4.75088 4.89761 5.09640 5.13848 5.19270 5.27413 5.31811 5.37039 5.58389 5.62213 5.68895 5.77153 5.79756 5.85840 5.88174 5.91246 5.96130 6.00446 6.05446 6.11444 6.19623 6.21066 6.26286 6.29155 6.39271 6.45462 6.48966 6.79756 6.95088 7.21784 7.43777 7.71325 7.98183 8.34811 8.64209 9.10756 9.73140 10.30960 11.20506 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029726 B = 0.004595 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.707544 B = 6092.002983 C = 6334.074028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.108 4.108 5 H 0.094 0.906 6 C -0.120 4.120 7 C -0.153 4.153 8 C 0.517 3.483 9 O -0.561 6.561 10 N -0.596 5.596 11 C 0.078 3.922 12 C 0.158 3.842 13 N -0.591 5.591 14 C -0.256 4.256 15 H 0.067 0.933 16 C 0.004 3.996 17 N -0.902 5.902 18 Si 0.904 3.096 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.278 1.278 22 C 0.132 3.868 23 C 0.095 3.905 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.023 0.977 39 H 0.098 0.902 40 H 0.255 0.745 41 H 0.023 0.977 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.964 -4.965 9.110 15.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.137 4.137 4 C -0.130 4.130 5 H 0.112 0.888 6 C -0.157 4.157 7 C -0.210 4.210 8 C 0.305 3.695 9 O -0.441 6.441 10 N -0.328 5.328 11 C -0.046 4.046 12 C 0.031 3.969 13 N -0.314 5.314 14 C -0.386 4.386 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.546 5.546 18 Si 0.734 3.266 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C 0.005 3.995 23 C -0.029 4.029 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.041 0.959 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.256 -4.575 9.027 15.136 hybrid contribution 1.128 -0.094 -0.144 1.141 sum -10.127 -4.670 8.883 14.258 Atomic orbital electron populations 1.21759 0.96002 1.01244 1.01851 1.21599 0.95740 0.96966 1.02023 1.21435 0.92642 0.96297 1.03352 1.21372 0.97260 0.94187 1.00152 0.88824 1.21646 1.01379 0.99327 0.93380 1.21816 1.01469 1.00333 0.97367 1.20517 0.81877 0.91111 0.75959 1.90619 1.54897 1.46145 1.52406 1.48046 1.07345 1.08106 1.69308 1.22854 0.91911 0.88033 1.01788 1.21259 0.97260 0.88252 0.90119 1.43977 1.04509 0.99706 1.83180 1.19221 0.84232 1.08436 1.26670 0.91494 1.25081 0.98411 0.99947 0.96019 1.70022 1.34331 1.22410 1.27849 0.86260 0.85428 0.77908 0.76994 1.21351 1.21721 1.20373 1.21289 0.92517 0.92653 0.93044 1.22172 0.98139 0.82646 0.99937 0.92749 0.92985 0.92857 0.91997 0.91849 0.91080 0.91507 0.90881 0.90861 0.92826 0.92624 0.92430 0.91919 0.90674 0.95863 0.88402 0.93494 0.95946 0.91639 0.90108 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.13 -1.24 5.61 -26.73 -0.15 -1.39 16 3 C -0.10 -1.24 3.82 -26.73 -0.10 -1.34 16 4 C -0.11 -1.47 1.65 -91.77 -0.15 -1.62 16 5 H 0.09 1.24 7.22 -51.92 -0.38 0.86 16 6 C -0.12 -1.38 5.16 -26.73 -0.14 -1.52 16 7 C -0.15 -1.80 9.30 37.16 0.35 -1.45 16 8 C 0.52 9.02 5.53 -10.99 -0.06 8.96 16 9 O -0.56 -11.30 15.40 5.55 0.09 -11.22 16 10 N -0.60 -10.85 2.94 -172.22 -0.51 -11.35 16 11 C 0.08 1.39 5.26 -3.36 -0.02 1.38 16 12 C 0.16 3.57 5.52 -3.36 -0.02 3.55 16 13 N -0.59 -14.45 2.96 -171.75 -0.51 -14.96 16 14 C -0.26 -6.82 9.57 -15.06 -0.14 -6.96 16 15 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 16 C 0.00 0.12 4.90 -17.43 -0.09 0.03 16 17 N -0.90 -25.30 11.25 55.49 0.62 -24.68 16 18 Si 0.90 21.04 29.59 -169.99 -5.03 16.01 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.13 2.81 6.67 -3.59 -0.02 2.79 16 23 C 0.10 1.79 6.59 -3.60 -0.02 1.76 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.57 6.68 -51.93 -0.35 0.22 16 29 H 0.07 0.92 6.36 -51.92 -0.33 0.59 16 30 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 31 H 0.07 0.70 6.53 -51.93 -0.34 0.36 16 32 H 0.07 0.88 5.81 -51.93 -0.30 0.58 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.79 6.95 -51.93 -0.36 0.43 16 35 H 0.06 0.64 6.66 -51.93 -0.35 0.29 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.13 4.79 -51.93 -0.25 0.88 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.10 2.43 6.05 -51.93 -0.31 2.12 16 40 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 1.33 7.94 -51.93 -0.41 0.92 16 43 H 0.08 1.50 6.99 -51.93 -0.36 1.13 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -29.81 332.47 -8.04 -37.85 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.51 Total: 0.14 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -0.20 Total: 3.20 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: -0.39 Total: -50.99 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.81 -8.04 -37.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820145199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.946 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds