Wall clock time and date at job start Mon Mar 30 2020 00:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46880 * 2 1 4 4 C 1.53001 * 109.47166 * 183.43717 * 3 2 1 5 5 H 1.09009 * 109.46666 * 54.80347 * 4 3 2 6 6 C 1.53004 * 109.47196 * 294.80850 * 4 3 2 7 7 C 1.53000 * 109.46791 * 297.48421 * 6 4 3 8 8 C 1.50689 * 109.47187 * 174.80215 * 4 3 2 9 9 O 1.21285 * 120.00534 * 6.73066 * 8 4 3 10 10 N 1.34781 * 120.00153 * 186.73287 * 8 4 3 11 11 C 1.46965 * 120.58958 * 3.02410 * 10 8 4 12 12 C 1.53818 * 108.39453 * 124.76336 * 11 10 8 13 13 N 1.46970 * 108.57821 * 49.64026 * 12 11 10 14 14 C 1.36930 * 120.59413 * 124.66846 * 13 12 11 15 15 H 1.08006 * 119.99731 * 208.91752 * 14 13 12 16 16 C 1.38814 * 120.00372 * 28.92304 * 14 13 12 17 17 N 1.31624 * 119.99737 * 17.36432 * 16 14 13 18 18 Si 1.86796 * 120.00445 * 197.36877 * 16 14 13 19 19 H 1.48497 * 109.47257 * 89.99442 * 18 16 14 20 20 H 1.48501 * 109.47280 * 210.00074 * 18 16 14 21 21 H 1.48500 * 109.46786 * 329.99737 * 18 16 14 22 22 C 1.46971 * 118.80981 * 304.64431 * 13 12 11 23 23 C 1.46961 * 120.59815 * 183.31551 * 10 8 4 24 24 H 1.08996 * 109.46941 * 59.99610 * 1 2 3 25 25 H 1.09005 * 109.47125 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.46996 * 299.99946 * 1 2 3 27 27 H 1.08995 * 109.46877 * 240.00048 * 2 1 3 28 28 H 1.09002 * 109.46976 * 119.99961 * 2 1 3 29 29 H 1.09008 * 109.47008 * 63.44196 * 3 2 1 30 30 H 1.08995 * 109.47159 * 303.44200 * 3 2 1 31 31 H 1.08998 * 109.47138 * 57.48367 * 6 4 3 32 32 H 1.08996 * 109.46691 * 177.49025 * 6 4 3 33 33 H 1.08998 * 109.47340 * 185.33886 * 7 6 4 34 34 H 1.09003 * 109.47538 * 305.34405 * 7 6 4 35 35 H 1.09000 * 109.47266 * 65.33635 * 7 6 4 36 36 H 1.08997 * 109.61786 * 244.54390 * 11 10 8 37 37 H 1.09002 * 109.61107 * 5.06106 * 11 10 8 38 38 H 1.09000 * 109.74242 * 289.85199 * 12 11 10 39 39 H 1.09002 * 109.53568 * 169.30244 * 12 11 10 40 40 H 0.96994 * 119.99981 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.60808 * 295.48776 * 22 13 12 42 42 H 1.08995 * 109.74952 * 175.05478 * 22 13 12 43 43 H 1.09002 * 109.60569 * 354.94273 * 23 10 8 44 44 H 1.09000 * 109.61119 * 115.45419 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5676 1.4435 -0.0865 5 1 3.8825 0.8682 -0.9572 6 6 4.1505 0.8125 1.1796 7 6 3.7604 1.6553 2.3955 8 6 4.0625 2.8609 -0.2151 9 8 3.2853 3.7864 -0.1132 10 7 5.3691 3.1004 -0.4434 11 6 6.3109 1.9886 -0.6349 12 6 7.0331 2.1902 -1.9780 13 7 7.5426 3.5676 -2.0336 14 6 8.8700 3.8109 -2.2654 15 1 9.3338 4.7007 -1.8658 16 6 9.6197 2.9140 -3.0141 17 7 9.0158 2.0292 -3.7790 18 14 11.4854 2.9625 -2.9362 19 1 11.9589 2.0682 -1.8495 20 1 12.0470 2.5062 -4.2330 21 1 11.9333 4.3520 -2.6643 22 6 6.6017 4.6793 -1.8364 23 6 5.8786 4.4778 -0.4989 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.7279 1.9383 0.9193 30 1 1.6272 1.9738 -0.8575 31 1 3.7574 -0.1974 1.2964 32 1 5.2367 0.7726 1.0986 33 1 4.2529 1.2608 3.2842 34 1 4.0706 2.6881 2.2364 35 1 2.6796 1.6177 2.5321 36 1 7.0382 1.9811 0.1769 37 1 5.7652 1.0452 -0.6493 38 1 6.3360 2.0246 -2.7994 39 1 7.8645 1.4893 -2.0536 40 1 9.5395 1.4022 -4.3018 41 1 5.8739 4.6908 -2.6477 42 1 7.1457 5.6236 -1.8195 43 1 5.0472 5.1786 -0.4234 44 1 6.5757 4.6434 0.3225 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820145199.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:48 Heat of formation + Delta-G solvation = -47.512566 kcal Electronic energy + Delta-G solvation = -21898.066150 eV Core-core repulsion = 18849.709354 eV Total energy + Delta-G solvation = -3048.356796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44330 -38.66743 -37.27054 -35.63281 -33.94862 -32.99422 -31.85133 -29.83735 -28.68845 -26.26034 -25.43915 -24.27955 -23.70916 -22.28844 -20.90337 -19.81701 -18.59136 -17.65276 -17.10518 -16.85206 -16.61945 -16.09844 -15.50309 -15.48408 -15.16665 -14.86467 -14.75022 -14.58400 -14.10138 -13.68504 -13.60785 -13.32762 -13.15179 -12.89203 -12.72178 -12.65391 -12.50658 -12.24774 -12.12957 -12.05534 -11.92391 -11.79674 -11.76369 -11.67935 -11.45916 -11.26272 -10.64625 -10.51902 -9.79950 -8.65828 -7.89461 -5.38566 1.49118 1.50553 1.59235 1.68685 2.08511 2.51228 3.24933 3.50679 3.58478 3.78659 3.91855 4.14957 4.21784 4.27798 4.29571 4.34689 4.39723 4.42666 4.57012 4.62708 4.67375 4.74149 4.76582 4.80088 4.82577 4.93194 5.01286 5.05042 5.12022 5.18082 5.20243 5.22844 5.28217 5.40337 5.45040 5.52686 5.57625 5.61370 5.66612 6.34905 6.54239 7.10146 7.22385 7.77134 8.31668 9.15678 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029726 B = 0.004595 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.707544 B = 6092.002983 C = 6334.074028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.105 4.105 5 H 0.101 0.899 6 C -0.115 4.115 7 C -0.150 4.150 8 C 0.514 3.486 9 O -0.591 6.591 10 N -0.602 5.602 11 C 0.097 3.903 12 C 0.163 3.837 13 N -0.608 5.608 14 C -0.269 4.269 15 H 0.068 0.932 16 C -0.043 4.043 17 N -0.932 5.932 18 Si 0.969 3.031 19 H -0.281 1.281 20 H -0.296 1.296 21 H -0.272 1.272 22 C 0.133 3.867 23 C 0.105 3.895 24 H 0.046 0.954 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.025 0.975 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.108 0.892 38 H -0.002 1.002 39 H 0.075 0.925 40 H 0.253 0.747 41 H 0.005 0.995 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 -6.322 10.674 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.132 4.132 4 C -0.126 4.126 5 H 0.119 0.881 6 C -0.153 4.153 7 C -0.207 4.207 8 C 0.304 3.696 9 O -0.472 6.472 10 N -0.334 5.334 11 C -0.027 4.027 12 C 0.036 3.964 13 N -0.331 5.331 14 C -0.399 4.399 15 H 0.085 0.915 16 C -0.239 4.239 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.207 1.207 20 H -0.223 1.223 21 H -0.196 1.196 22 C 0.006 3.994 23 C -0.019 4.019 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.045 0.955 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.126 0.874 38 H 0.016 0.984 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.023 0.977 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.398 -5.928 10.611 16.663 hybrid contribution 1.106 0.396 -0.667 1.351 sum -10.292 -5.531 9.945 15.343 Atomic orbital electron populations 1.21766 0.95424 1.02139 1.01603 1.21574 0.96245 0.94936 1.02996 1.21395 0.91776 0.98018 1.02052 1.21466 0.98030 0.91455 1.01694 0.88083 1.21678 1.01254 1.00496 0.91852 1.21794 1.02023 0.98656 0.98257 1.21270 0.81062 0.92611 0.74621 1.90601 1.55440 1.47610 1.53559 1.48134 1.07912 1.07793 1.69556 1.22642 0.91979 0.89260 0.98831 1.21120 0.96185 0.87064 0.92012 1.44242 1.04507 1.01013 1.83382 1.19519 0.85423 1.08509 1.26410 0.91466 1.25798 1.02408 0.99827 0.95834 1.70165 1.35681 1.23166 1.28745 0.85247 0.80376 0.78087 0.76570 1.20695 1.22293 1.19647 1.21336 0.91888 0.92231 0.93911 1.21966 0.98014 0.83510 0.98443 0.93467 0.91496 0.92746 0.91579 0.90215 0.91742 0.93636 0.87920 0.90977 0.91089 0.95542 0.91861 0.91197 0.87412 0.98404 0.90712 0.93832 0.97680 0.91066 0.89949 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.67 16 2 C -0.12 -2.03 5.61 30.60 0.17 -1.86 16 3 C -0.09 -2.21 3.82 30.60 0.12 -2.09 16 4 C -0.11 -2.65 1.65 -11.54 -0.02 -2.67 16 5 H 0.10 2.42 7.22 -2.38 -0.02 2.41 16 6 C -0.12 -2.30 5.16 30.60 0.16 -2.14 16 7 C -0.15 -3.17 9.30 71.98 0.67 -2.50 16 8 C 0.51 17.52 5.53 87.65 0.48 18.01 16 9 O -0.59 -23.78 15.40 -3.04 -0.05 -23.82 16 10 N -0.60 -21.46 2.94 -817.15 -2.40 -23.86 16 11 C 0.10 3.32 5.26 86.57 0.46 3.77 16 12 C 0.16 7.42 5.52 86.57 0.48 7.90 16 13 N -0.61 -30.03 2.96 -697.30 -2.07 -32.10 16 14 C -0.27 -14.37 9.57 84.04 0.80 -13.57 16 15 H 0.07 3.52 7.89 -2.91 -0.02 3.49 16 16 C -0.04 -2.29 4.90 84.86 0.42 -1.88 16 17 N -0.93 -53.06 11.25 21.65 0.24 -52.81 16 18 Si 0.97 43.24 29.59 68.60 2.03 45.27 16 19 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 20 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.13 5.72 6.67 86.41 0.58 6.29 16 23 C 0.11 3.91 6.59 86.42 0.57 4.48 16 24 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 1.11 6.68 -2.39 -0.02 1.10 16 29 H 0.06 1.59 6.36 -2.38 -0.02 1.57 16 30 H 0.04 1.24 8.05 -2.39 -0.02 1.22 16 31 H 0.10 1.50 6.53 -2.39 -0.02 1.49 16 32 H 0.07 1.48 5.81 -2.39 -0.01 1.46 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.03 0.70 6.95 -2.39 -0.02 0.69 16 35 H 0.06 1.25 6.66 -2.39 -0.02 1.24 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.11 2.99 4.79 -2.39 -0.01 2.97 16 38 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.07 3.77 6.05 -2.39 -0.01 3.75 16 40 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 41 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.07 2.92 7.94 -2.39 -0.02 2.90 16 43 H 0.08 3.05 6.99 -2.39 -0.02 3.03 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -64.65 332.47 4.31 -60.34 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.96 Total: 14.90 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.60 Total: 12.08 kcal Atomic # 7 Polarization: -104.54 SS G_CDS: -4.23 Total: -108.77 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.05 Total: -23.82 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -64.65 4.31 -60.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820145199.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.826 kcal (2) G-P(sol) polarization free energy of solvation -64.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds