Wall clock time and date at job start Mon Mar 30 2020 01:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46870 * 2 1 4 4 C 1.50700 * 109.47243 * 240.00181 * 2 1 3 5 5 H 1.08003 * 119.99375 * 241.34854 * 4 2 1 6 6 C 1.37874 * 119.99919 * 61.34482 * 4 2 1 7 7 N 1.31515 * 119.99546 * 193.98029 * 6 4 2 8 8 Si 1.86799 * 120.00219 * 13.97713 * 6 4 2 9 9 H 1.48496 * 109.46868 * 84.55083 * 8 6 4 10 10 H 1.48501 * 109.46957 * 204.54914 * 8 6 4 11 11 H 1.48499 * 109.47252 * 324.54875 * 8 6 4 12 12 C 1.52998 * 109.46802 * 119.99630 * 2 1 3 13 13 N 1.46492 * 109.47328 * 300.00023 * 12 2 1 14 14 C 1.34781 * 119.99705 * 180.02562 * 13 12 2 15 15 O 1.21590 * 120.00163 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99870 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99850 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46904 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.47008 * 179.97438 * 18 17 16 20 20 C 1.53781 * 113.61417 * 274.13853 * 19 18 17 21 21 C 1.53958 * 87.01881 * 220.04761 * 20 19 18 22 22 C 1.53774 * 113.61349 * 176.53147 * 19 18 17 23 23 H 1.09004 * 109.47281 * 309.36711 * 1 2 3 24 24 H 1.08998 * 109.47053 * 69.36739 * 1 2 3 25 25 H 1.09004 * 109.47090 * 189.36588 * 1 2 3 26 26 H 1.09003 * 109.47050 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47154 * 300.00000 * 3 2 1 28 28 H 1.08996 * 109.47480 * 60.00007 * 3 2 1 29 29 H 0.97003 * 119.99617 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46616 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.47051 * 60.00947 * 12 2 1 32 32 H 0.96996 * 120.00775 * 0.02562 * 13 12 2 33 33 H 0.96997 * 119.99851 * 359.97438 * 16 14 13 34 34 H 1.09003 * 109.46839 * 299.99484 * 17 16 14 35 35 H 1.09000 * 109.47353 * 59.99644 * 17 16 14 36 36 H 1.08990 * 109.47037 * 299.99883 * 18 17 16 37 37 H 1.09000 * 109.47092 * 59.99869 * 18 17 16 38 38 H 1.09001 * 112.84476 * 45.33301 * 19 18 17 39 39 H 1.08997 * 113.61506 * 334.57041 * 20 19 18 40 40 H 1.09001 * 113.61506 * 105.47277 * 20 19 18 41 41 H 1.09003 * 113.53696 * 270.81584 * 21 20 19 42 42 H 1.08991 * 113.66547 * 139.93236 * 21 20 19 43 43 H 1.09010 * 113.61216 * 254.53260 * 22 19 18 44 44 H 1.08999 * 113.61570 * 25.34534 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6352 -1.6010 -1.1314 6 6 1.7224 -0.2233 -2.4825 7 7 1.9158 -0.9726 -3.5459 8 14 1.0275 1.5007 -2.6684 9 1 2.1416 2.4816 -2.7084 10 1 0.2469 1.5865 -3.9288 11 1 0.1417 1.8043 -1.5159 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8776 -0.4907 3.6695 15 8 2.5767 -1.4794 3.7811 16 7 1.4279 0.1443 4.7700 17 6 1.7818 -0.3562 6.1005 18 6 1.1486 0.5394 7.1673 19 6 1.5177 0.0163 8.5570 20 6 0.5719 -1.0808 9.0735 21 6 0.6719 -0.4052 10.4533 22 6 0.9986 0.8980 9.7050 23 1 -0.3634 0.6519 0.7945 24 1 -0.3633 0.3621 -0.9617 25 1 -0.3633 -1.0140 0.1672 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6980 -0.6298 -4.4268 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 0.9937 0.7579 2.3565 33 1 0.8700 0.9328 4.6810 34 1 1.4127 -1.3753 6.2154 35 1 2.8657 -0.3472 6.2157 36 1 1.5181 1.5583 7.0523 37 1 0.0647 0.5308 7.0523 38 1 2.5734 -0.2399 8.6461 39 1 -0.4262 -1.0376 8.6375 40 1 1.0051 -2.0805 9.0435 41 1 1.4961 -0.7777 11.0617 42 1 -0.2738 -0.3727 10.9941 43 1 1.7759 1.4935 10.1840 44 1 0.1183 1.4843 9.4415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838512474.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:48 Heat of formation + Delta-G solvation = -14.031844 kcal Electronic energy + Delta-G solvation = -20542.327434 eV Core-core repulsion = 17495.422471 eV Total energy + Delta-G solvation = -3046.904963 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.78265 -39.12775 -36.88119 -34.89731 -33.26194 -31.60055 -30.64434 -26.41267 -26.23101 -25.90374 -25.10822 -24.31623 -21.94014 -20.67826 -19.67435 -19.14378 -18.02098 -16.13607 -16.03867 -15.88780 -15.49279 -15.22014 -14.83929 -14.42194 -13.95295 -13.73586 -13.27387 -12.91214 -12.84711 -12.76693 -12.57592 -12.46104 -12.19154 -12.02952 -11.65325 -11.45618 -11.20343 -10.91252 -10.51668 -10.45878 -10.40583 -10.28684 -10.15459 -10.04578 -9.78092 -9.11495 -9.00019 -8.67131 -8.46924 -8.29598 -6.13260 -4.10244 3.05108 3.24821 3.31759 3.39291 3.60312 4.22457 4.30950 4.36696 4.39811 4.53061 4.65974 4.90128 5.10728 5.17193 5.17661 5.30845 5.41610 5.44486 5.54539 5.59909 5.66004 5.77858 5.82445 5.93054 6.01100 6.07050 6.10683 6.19319 6.37223 6.47648 6.55716 6.63313 6.64737 6.73219 6.85796 7.02489 7.23177 7.29759 7.45827 7.74880 8.36436 8.49681 8.92311 8.99217 9.50704 10.99904 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.049448 B = 0.003031 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.120336 B = 9235.810890 C = 9489.555455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.028 3.972 3 C -0.147 4.147 4 C -0.512 4.512 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.886 3.114 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.249 1.249 12 C 0.160 3.840 13 N -0.739 5.739 14 C 0.698 3.302 15 O -0.596 6.596 16 N -0.755 5.755 17 C 0.141 3.859 18 C -0.121 4.121 19 C -0.107 4.107 20 C -0.139 4.139 21 C -0.144 4.144 22 C -0.137 4.137 23 H 0.021 0.979 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.029 0.971 29 H 0.264 0.736 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.391 0.609 33 H 0.392 0.608 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.625 6.422 23.861 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.550 4.550 5 H 0.095 0.905 6 C -0.128 4.128 7 N -0.528 5.528 8 Si 0.719 3.281 9 H -0.214 1.214 10 H -0.235 1.235 11 H -0.175 1.175 12 C 0.037 3.963 13 N -0.394 5.394 14 C 0.397 3.603 15 O -0.475 6.475 16 N -0.412 5.412 17 C 0.017 3.983 18 C -0.159 4.159 19 C -0.126 4.126 20 C -0.176 4.176 21 C -0.182 4.182 22 C -0.174 4.174 23 H 0.040 0.960 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.225 0.775 33 H 0.225 0.775 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.963 5.440 23.732 24.668 hybrid contribution -0.818 1.728 -0.408 1.955 sum -4.781 7.168 23.324 24.864 Atomic orbital electron populations 1.22287 0.97889 0.99827 0.99834 1.18730 0.92489 0.92261 0.93809 1.22349 1.01204 0.98341 0.98450 1.20726 1.33976 1.12312 0.87968 0.90501 1.24976 0.94714 0.97309 0.95793 1.69956 1.48269 1.35891 0.98704 0.87284 0.79307 0.85584 0.75925 1.21396 1.23455 1.17547 1.21363 0.98329 0.95438 0.81135 1.45496 1.55924 1.33121 1.04821 1.16057 0.80561 0.83023 0.80631 1.90900 1.42927 1.27605 1.86066 1.45154 1.57525 1.33356 1.05153 1.21102 0.99723 0.97629 0.79871 1.21791 1.01036 0.99484 0.93583 1.22472 0.99991 0.97018 0.93129 1.23034 0.99943 0.98337 0.96321 1.22843 1.01726 0.97011 0.96588 1.22937 1.01169 0.96453 0.96888 0.96020 0.92592 0.93401 0.92794 0.94121 0.95230 0.92584 0.92247 0.92132 0.77467 0.77470 0.91856 0.91982 0.91235 0.91261 0.88907 0.90037 0.91360 0.90279 0.91598 0.91576 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 7.53 37.16 0.28 -2.61 16 2 C 0.03 0.63 0.50 -155.66 -0.08 0.55 16 3 C -0.15 -2.99 7.52 37.16 0.28 -2.71 16 4 C -0.51 -13.87 8.62 -34.44 -0.30 -14.17 16 5 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 6 C 0.07 2.09 5.32 -17.82 -0.09 1.99 16 7 N -0.89 -26.80 13.96 55.43 0.77 -26.02 16 8 Si 0.89 21.17 22.79 -169.99 -3.87 17.30 16 9 H -0.29 -6.82 7.10 56.52 0.40 -6.42 16 10 H -0.31 -7.48 7.11 56.52 0.40 -7.08 16 11 H -0.25 -5.40 4.65 56.52 0.26 -5.14 16 12 C 0.16 3.31 4.49 -4.05 -0.02 3.29 16 13 N -0.74 -12.51 5.01 -65.23 -0.33 -12.83 16 14 C 0.70 12.06 8.57 -86.91 -0.74 11.32 16 15 O -0.60 -12.91 16.34 5.29 0.09 -12.82 16 16 N -0.76 -9.38 5.56 -65.22 -0.36 -9.74 16 17 C 0.14 1.54 5.67 -4.04 -0.02 1.52 16 18 C -0.12 -0.91 5.15 -26.73 -0.14 -1.05 16 19 C -0.11 -0.75 3.64 -89.81 -0.33 -1.08 16 20 C -0.14 -0.97 7.65 -25.83 -0.20 -1.17 16 21 C -0.14 -0.89 8.09 -25.83 -0.21 -1.10 16 22 C -0.14 -0.85 7.64 -25.92 -0.20 -1.05 16 23 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 24 H 0.06 1.22 4.30 -51.93 -0.22 0.99 16 25 H 0.05 0.98 8.12 -51.93 -0.42 0.55 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.04 0.87 2.25 -51.93 -0.12 0.76 16 28 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.39 5.66 6.27 -40.82 -0.26 5.40 16 33 H 0.39 3.72 8.49 -40.82 -0.35 3.37 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.57 7.92 -51.93 -0.41 0.15 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 44 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 LS Contribution 336.07 15.07 5.06 5.06 Total: -1.00 -31.88 336.07 -8.08 -39.96 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.67 Total: 5.37 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -1.77 Total: -6.27 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 0.08 Total: -48.60 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -3.87 Total: 17.30 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.88 -8.08 -39.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838512474.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.926 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds