Wall clock time and date at job start Mon Mar 30 2020 01:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47249 * 2 1 4 4 C 1.53001 * 109.46496 * 240.00251 * 2 1 3 5 5 N 1.46502 * 109.46941 * 184.99724 * 4 2 1 6 6 C 1.46503 * 120.00027 * 270.00374 * 5 4 2 7 7 C 1.34778 * 120.00180 * 90.00210 * 5 4 2 8 8 O 1.21586 * 119.99721 * 6.50491 * 7 5 4 9 9 N 1.34771 * 120.00530 * 186.50744 * 7 5 4 10 10 C 1.46930 * 120.62623 * 18.72399 * 9 7 5 11 11 C 1.53627 * 108.54277 * 126.36941 * 10 9 7 12 12 C 1.53042 * 109.24066 * 54.85333 * 11 10 9 13 13 C 1.53035 * 109.53968 * 298.51409 * 12 11 10 14 14 H 1.09000 * 109.49914 * 301.40830 * 13 12 11 15 15 C 1.50711 * 109.52645 * 181.33014 * 13 12 11 16 16 H 1.08001 * 119.99342 * 0.14651 * 15 13 12 17 17 C 1.37878 * 120.00139 * 180.14515 * 15 13 12 18 18 N 1.31512 * 119.99932 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99674 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47149 * 60.00040 * 19 17 15 21 21 H 1.48499 * 109.46760 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47119 * 299.99786 * 19 17 15 23 23 C 1.46920 * 120.63261 * 199.00560 * 9 7 5 24 24 H 1.08996 * 109.47649 * 59.99448 * 1 2 3 25 25 H 1.09009 * 109.47196 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46907 * 299.99551 * 1 2 3 27 27 H 1.08995 * 109.47167 * 120.00771 * 2 1 3 28 28 H 1.09001 * 109.47394 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47300 * 300.00804 * 3 2 1 30 30 H 1.09007 * 109.46799 * 60.00383 * 3 2 1 31 31 H 1.08993 * 109.47604 * 304.99733 * 4 2 1 32 32 H 1.09001 * 109.47251 * 65.00375 * 4 2 1 33 33 H 1.08997 * 109.47128 * 84.83141 * 6 5 4 34 34 H 1.09000 * 109.47009 * 204.83085 * 6 5 4 35 35 H 1.09002 * 109.47012 * 324.82623 * 6 5 4 36 36 H 1.08991 * 109.58736 * 246.20053 * 10 9 7 37 37 H 1.08998 * 109.58925 * 6.63071 * 10 9 7 38 38 H 1.09003 * 109.63395 * 294.86996 * 11 10 9 39 39 H 1.08991 * 109.43667 * 174.72521 * 11 10 9 40 40 H 1.09001 * 109.46458 * 178.48835 * 12 11 10 41 41 H 1.09010 * 109.44575 * 58.52672 * 12 11 10 42 42 H 0.96998 * 119.99788 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.58536 * 353.37416 * 23 9 7 44 44 H 1.09006 * 109.58878 * 113.65815 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1908 6 6 4.3342 0.2341 -1.7615 7 6 4.0757 -1.8987 -0.6119 8 8 3.3896 -2.8329 -0.2446 9 7 5.4119 -1.9355 -0.4401 10 6 6.2069 -0.7007 -0.4861 11 6 7.0448 -0.6109 0.7984 12 6 7.8753 -1.8875 0.9490 13 6 6.9419 -3.0945 1.0666 14 1 6.2832 -2.9627 1.9249 15 6 7.7593 -4.3477 1.2476 16 1 8.8373 -4.2894 1.2785 17 6 7.1310 -5.5684 1.3740 18 7 5.8183 -5.6393 1.3359 19 14 8.1442 -7.1215 1.5991 20 1 8.9575 -7.0069 2.8363 21 1 7.2375 -8.2924 1.7088 22 1 9.0431 -7.2999 0.4305 23 6 6.1021 -3.2118 -0.2093 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6053 -1.7197 -1.2953 32 1 1.7515 -0.1582 -2.1370 33 1 4.4638 1.0292 -1.0272 34 1 5.3082 -0.1747 -2.0301 35 1 3.8512 0.6369 -2.6518 36 1 6.8653 -0.7222 -1.3544 37 1 5.5414 0.1601 -0.5508 38 1 6.3850 -0.5025 1.6592 39 1 7.7096 0.2507 0.7382 40 1 8.4916 -1.8163 1.8453 41 1 8.5169 -2.0082 0.0759 42 1 5.3763 -6.4981 1.4252 43 1 5.3675 -4.0083 -0.0913 44 1 6.7504 -3.4352 -1.0567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849420335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:20 Heat of formation + Delta-G solvation = -1.466891 kcal Electronic energy + Delta-G solvation = -22190.967654 eV Core-core repulsion = 19144.607549 eV Total energy + Delta-G solvation = -3046.360105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.18318 -37.26598 -36.08853 -34.39660 -32.84946 -31.54752 -29.84490 -27.91690 -26.98037 -26.02598 -24.88268 -23.14860 -21.78638 -20.51957 -19.48245 -18.64742 -16.67256 -16.08215 -16.03296 -15.63603 -15.01039 -14.49254 -14.08882 -13.98499 -13.56881 -13.34002 -12.99271 -12.79146 -12.66759 -12.38631 -12.28879 -12.17766 -12.06046 -11.79971 -11.55258 -11.16872 -10.90944 -10.81130 -10.66365 -10.57254 -10.37398 -10.19479 -10.02450 -9.73762 -9.31960 -9.03351 -8.83498 -8.39951 -8.27746 -7.51494 -5.91909 -4.01682 3.16722 3.35937 3.41362 3.42728 3.79040 4.33550 4.48843 4.92404 4.93581 5.00529 5.11162 5.34862 5.36985 5.41494 5.52676 5.54086 5.58550 5.69462 5.73963 5.77984 5.80884 5.92083 5.97357 6.04337 6.12892 6.23502 6.31033 6.36416 6.39639 6.62747 6.72309 6.81492 6.95173 7.06966 7.11646 7.44298 7.55069 7.78764 7.99521 8.11965 8.47553 8.62524 9.01961 9.29073 9.63433 11.12585 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.005354 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.245778 B = 5228.965266 C = 5886.286955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.146 4.146 4 C 0.140 3.860 5 N -0.639 5.639 6 C 0.068 3.932 7 C 0.703 3.297 8 O -0.575 6.575 9 N -0.626 5.626 10 C 0.080 3.920 11 C -0.135 4.135 12 C -0.109 4.109 13 C 0.041 3.959 14 H 0.029 0.971 15 C -0.522 4.522 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.878 5.878 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.131 3.869 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.263 0.737 43 H 0.120 0.880 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 15.224 -6.325 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.137 4.137 3 C -0.203 4.203 4 C 0.016 3.984 5 N -0.378 5.378 6 C -0.075 4.075 7 C 0.406 3.594 8 O -0.451 6.451 9 N -0.363 5.363 10 C -0.043 4.043 11 C -0.173 4.173 12 C -0.147 4.147 13 C 0.022 3.978 14 H 0.047 0.953 15 C -0.561 4.561 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.515 5.515 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.011 3.989 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.106 0.894 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.138 0.862 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.849 14.520 -6.117 16.807 hybrid contribution 0.672 -0.718 0.153 0.995 sum -5.177 13.802 -5.964 15.902 Atomic orbital electron populations 1.21748 0.94928 1.01957 1.01389 1.21567 0.95663 0.96479 0.99982 1.21931 1.01400 0.95880 1.01128 1.21317 0.79037 1.01474 0.96536 1.47103 1.06155 1.22164 1.62399 1.22511 0.96953 0.90815 0.97205 1.16051 0.82508 0.82096 0.78785 1.90922 1.61866 1.36777 1.55508 1.47663 1.04339 1.09374 1.74902 1.22781 0.95058 0.88918 0.97510 1.22063 0.98739 0.98765 0.97738 1.21612 0.98136 0.94789 1.00183 1.18947 0.93098 0.91889 0.93891 0.95331 1.21053 0.92854 0.91283 1.50915 0.92539 1.25059 0.94888 0.99073 0.94998 1.69907 1.07329 1.25374 1.48875 0.86682 0.79998 0.82814 0.78629 1.20324 1.21292 1.20304 1.22130 0.96764 0.82734 0.97303 0.92898 0.92390 0.92753 0.90663 0.92356 0.93061 0.93112 0.89843 0.91322 0.92563 0.89381 0.92501 0.92597 0.88350 0.92372 0.92606 0.93302 0.93393 0.92670 0.86226 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.19 37.16 0.34 -1.14 16 2 C -0.12 -1.46 3.13 -90.62 -0.28 -1.75 16 3 C -0.15 -1.51 8.76 37.15 0.33 -1.19 16 4 C 0.14 1.90 4.97 -4.04 -0.02 1.88 16 5 N -0.64 -9.95 2.70 -202.79 -0.55 -10.50 16 6 C 0.07 0.77 7.75 59.85 0.46 1.23 16 7 C 0.70 14.82 8.00 -86.92 -0.70 14.12 16 8 O -0.57 -14.85 15.45 5.29 0.08 -14.77 16 9 N -0.63 -13.00 2.91 -178.23 -0.52 -13.52 16 10 C 0.08 1.27 4.39 -3.48 -0.02 1.26 16 11 C -0.13 -2.26 6.10 -26.38 -0.16 -2.42 16 12 C -0.11 -2.25 5.11 -26.69 -0.14 -2.39 16 13 C 0.04 1.05 2.25 -91.65 -0.21 0.84 16 14 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 15 C -0.52 -14.47 8.57 -34.43 -0.29 -14.77 16 16 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -26.24 11.39 55.43 0.63 -25.61 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.13 3.28 5.40 -3.71 -0.02 3.26 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.63 5.33 -51.93 -0.28 0.35 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.32 7.34 -51.93 -0.38 0.94 16 32 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 33 H 0.06 0.56 4.91 -51.93 -0.25 0.31 16 34 H 0.09 1.04 4.73 -51.93 -0.25 0.79 16 35 H 0.06 0.51 7.97 -51.93 -0.41 0.10 16 36 H 0.06 0.81 7.62 -51.93 -0.40 0.42 16 37 H 0.10 1.29 3.43 -70.44 -0.24 1.05 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.05 0.95 8.14 -51.92 -0.42 0.53 16 42 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.12 3.50 5.21 -51.93 -0.27 3.23 16 44 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -32.48 330.45 -8.70 -41.18 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -7.51 Total: 1.03 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.80 Total: 0.63 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.43 Total: -49.62 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.08 Total: -14.77 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.48 -8.70 -41.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849420335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.713 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds