Wall clock time and date at job start Mon Mar 30 2020 01:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47249 * 2 1 4 4 C 1.53001 * 109.46496 * 240.00251 * 2 1 3 5 5 N 1.46502 * 109.46941 * 184.99724 * 4 2 1 6 6 C 1.46503 * 120.00027 * 270.00374 * 5 4 2 7 7 C 1.34778 * 120.00180 * 90.00210 * 5 4 2 8 8 O 1.21586 * 119.99721 * 6.50491 * 7 5 4 9 9 N 1.34771 * 120.00530 * 186.50744 * 7 5 4 10 10 C 1.46930 * 120.62623 * 18.72399 * 9 7 5 11 11 C 1.53627 * 108.54277 * 126.36941 * 10 9 7 12 12 C 1.53042 * 109.24066 * 54.85333 * 11 10 9 13 13 C 1.53035 * 109.53968 * 298.51409 * 12 11 10 14 14 H 1.09000 * 109.49914 * 301.40830 * 13 12 11 15 15 C 1.50711 * 109.52645 * 181.33014 * 13 12 11 16 16 H 1.08001 * 119.99342 * 0.14651 * 15 13 12 17 17 C 1.37878 * 120.00139 * 180.14515 * 15 13 12 18 18 N 1.31512 * 119.99932 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 119.99674 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47149 * 60.00040 * 19 17 15 21 21 H 1.48499 * 109.46760 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47119 * 299.99786 * 19 17 15 23 23 C 1.46920 * 120.63261 * 199.00560 * 9 7 5 24 24 H 1.08996 * 109.47649 * 59.99448 * 1 2 3 25 25 H 1.09009 * 109.47196 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46907 * 299.99551 * 1 2 3 27 27 H 1.08995 * 109.47167 * 120.00771 * 2 1 3 28 28 H 1.09001 * 109.47394 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47300 * 300.00804 * 3 2 1 30 30 H 1.09007 * 109.46799 * 60.00383 * 3 2 1 31 31 H 1.08993 * 109.47604 * 304.99733 * 4 2 1 32 32 H 1.09001 * 109.47251 * 65.00375 * 4 2 1 33 33 H 1.08997 * 109.47128 * 84.83141 * 6 5 4 34 34 H 1.09000 * 109.47009 * 204.83085 * 6 5 4 35 35 H 1.09002 * 109.47012 * 324.82623 * 6 5 4 36 36 H 1.08991 * 109.58736 * 246.20053 * 10 9 7 37 37 H 1.08998 * 109.58925 * 6.63071 * 10 9 7 38 38 H 1.09003 * 109.63395 * 294.86996 * 11 10 9 39 39 H 1.08991 * 109.43667 * 174.72521 * 11 10 9 40 40 H 1.09001 * 109.46458 * 178.48835 * 12 11 10 41 41 H 1.09010 * 109.44575 * 58.52672 * 12 11 10 42 42 H 0.96998 * 119.99788 * 180.02562 * 18 17 15 43 43 H 1.08996 * 109.58536 * 353.37416 * 23 9 7 44 44 H 1.09006 * 109.58878 * 113.65815 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1908 6 6 4.3342 0.2341 -1.7615 7 6 4.0757 -1.8987 -0.6119 8 8 3.3896 -2.8329 -0.2446 9 7 5.4119 -1.9355 -0.4401 10 6 6.2069 -0.7007 -0.4861 11 6 7.0448 -0.6109 0.7984 12 6 7.8753 -1.8875 0.9490 13 6 6.9419 -3.0945 1.0666 14 1 6.2832 -2.9627 1.9249 15 6 7.7593 -4.3477 1.2476 16 1 8.8373 -4.2894 1.2785 17 6 7.1310 -5.5684 1.3740 18 7 5.8183 -5.6393 1.3359 19 14 8.1442 -7.1215 1.5991 20 1 8.9575 -7.0069 2.8363 21 1 7.2375 -8.2924 1.7088 22 1 9.0431 -7.2999 0.4305 23 6 6.1021 -3.2118 -0.2093 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5139 0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6053 -1.7197 -1.2953 32 1 1.7515 -0.1582 -2.1370 33 1 4.4638 1.0292 -1.0272 34 1 5.3082 -0.1747 -2.0301 35 1 3.8512 0.6369 -2.6518 36 1 6.8653 -0.7222 -1.3544 37 1 5.5414 0.1601 -0.5508 38 1 6.3850 -0.5025 1.6592 39 1 7.7096 0.2507 0.7382 40 1 8.4916 -1.8163 1.8453 41 1 8.5169 -2.0082 0.0759 42 1 5.3763 -6.4981 1.4252 43 1 5.3675 -4.0083 -0.0913 44 1 6.7504 -3.4352 -1.0567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849420335.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:20 Heat of formation + Delta-G solvation = -21.972721 kcal Electronic energy + Delta-G solvation = -22191.856854 eV Core-core repulsion = 19144.607549 eV Total energy + Delta-G solvation = -3047.249305 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.66657 -38.74808 -37.55667 -35.87313 -34.59056 -33.18563 -31.59348 -29.05394 -27.90121 -27.42491 -26.77884 -24.60284 -23.44608 -21.76924 -20.97432 -20.16063 -18.53490 -17.72009 -17.45156 -16.94371 -16.57087 -16.19043 -15.51985 -15.21293 -14.98341 -14.84009 -14.43321 -14.35117 -14.02752 -13.86403 -13.53675 -13.41672 -13.34198 -13.00765 -12.83183 -12.65603 -12.49060 -12.24042 -12.21208 -11.99522 -11.76665 -11.64222 -11.60361 -11.36584 -11.16153 -10.92906 -10.56840 -10.51462 -9.72801 -9.07114 -8.08590 -6.27720 1.40046 1.42260 1.50733 1.77984 2.19302 2.42052 2.97602 3.19247 3.91926 3.94321 3.99113 4.16402 4.17794 4.26034 4.44381 4.50219 4.55105 4.60538 4.67627 4.74678 4.82313 4.84412 4.85322 4.90515 4.93696 5.03362 5.07493 5.10297 5.26336 5.27054 5.28099 5.31716 5.39154 5.47983 5.56135 5.68878 5.79296 5.88544 5.98751 6.13717 6.36695 6.86188 7.10713 7.42428 7.69084 8.93957 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.005354 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.245778 B = 5228.965266 C = 5886.286955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C -0.140 4.140 4 C 0.137 3.863 5 N -0.628 5.628 6 C 0.055 3.945 7 C 0.692 3.308 8 O -0.640 6.640 9 N -0.631 5.631 10 C 0.075 3.925 11 C -0.129 4.129 12 C -0.104 4.104 13 C 0.039 3.961 14 H -0.023 1.023 15 C -0.538 4.538 16 H 0.063 0.937 17 C 0.008 3.992 18 N -0.915 5.915 19 Si 0.960 3.040 20 H -0.268 1.268 21 H -0.289 1.289 22 H -0.264 1.264 23 C 0.146 3.854 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.112 0.888 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.136 0.864 38 H 0.039 0.961 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.258 0.742 43 H 0.070 0.930 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.240 18.534 -8.059 20.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.135 4.135 3 C -0.197 4.197 4 C 0.014 3.986 5 N -0.366 5.366 6 C -0.085 4.085 7 C 0.395 3.605 8 O -0.521 6.521 9 N -0.368 5.368 10 C -0.046 4.046 11 C -0.167 4.167 12 C -0.142 4.142 13 C 0.020 3.980 14 H -0.005 1.005 15 C -0.577 4.577 16 H 0.081 0.919 17 C -0.191 4.191 18 N -0.554 5.554 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.215 1.215 22 H -0.189 1.189 23 C 0.023 3.977 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.153 0.847 38 H 0.058 0.942 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.088 0.912 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.740 17.920 -7.876 20.140 hybrid contribution 0.292 -1.692 0.688 1.850 sum -4.447 16.228 -7.189 18.297 Atomic orbital electron populations 1.21722 0.93300 1.01506 1.03073 1.21505 0.97077 0.97641 0.97250 1.21885 1.01151 0.93862 1.02756 1.21514 0.77729 1.00495 0.98890 1.47097 1.07323 1.21440 1.60707 1.22824 0.96742 0.89799 0.99153 1.16377 0.82373 0.82877 0.78876 1.90873 1.63320 1.39745 1.58140 1.47544 1.04714 1.09635 1.74889 1.23268 0.95557 0.87754 0.97983 1.22055 0.98772 0.98317 0.97576 1.21502 0.97596 0.94438 1.00634 1.18881 0.93171 0.93853 0.92099 1.00475 1.21511 0.93380 0.92457 1.50317 0.91903 1.25950 0.95787 1.02689 0.94710 1.70139 1.09341 1.25698 1.50213 0.85590 0.78400 0.78383 0.79171 1.19316 1.21530 1.18919 1.21504 0.95417 0.83919 0.96846 0.90202 0.94009 0.91991 0.95439 0.92648 0.90252 0.92687 0.93340 0.86980 0.90059 0.89406 0.88727 0.89976 0.84701 0.94217 0.87773 0.93429 0.92218 0.93254 0.91203 0.94669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.19 71.98 0.66 -2.05 16 2 C -0.11 -2.78 3.13 -10.79 -0.03 -2.82 16 3 C -0.14 -2.41 8.76 71.98 0.63 -1.78 16 4 C 0.14 3.57 4.97 86.38 0.43 4.00 16 5 N -0.63 -18.79 2.70 -913.77 -2.46 -21.26 16 6 C 0.06 1.00 7.75 127.77 0.99 1.99 16 7 C 0.69 30.20 8.00 179.06 1.43 31.64 16 8 O -0.64 -35.77 15.45 -3.99 -0.06 -35.83 16 9 N -0.63 -26.62 2.91 -836.08 -2.44 -29.06 16 10 C 0.07 2.17 4.39 86.51 0.38 2.55 16 11 C -0.13 -4.02 6.10 30.82 0.19 -3.84 16 12 C -0.10 -4.20 5.11 30.62 0.16 -4.04 16 13 C 0.04 2.09 2.25 -11.46 -0.03 2.07 16 14 H -0.02 -1.43 8.14 -2.39 -0.02 -1.45 16 15 C -0.54 -30.74 8.57 25.60 0.22 -30.53 16 16 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 17 C 0.01 0.46 5.30 84.66 0.45 0.91 16 18 N -0.92 -58.17 11.39 21.45 0.24 -57.92 16 19 Si 0.96 45.47 29.54 68.60 2.03 47.49 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 23 C 0.15 7.66 5.40 86.36 0.47 8.12 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.05 0.98 5.33 -2.39 -0.01 0.97 16 29 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.05 1.61 7.34 -2.39 -0.02 1.59 16 32 H 0.11 1.97 7.94 -2.39 -0.02 1.95 16 33 H 0.08 1.16 4.91 -2.39 -0.01 1.14 16 34 H 0.09 1.67 4.73 -2.39 -0.01 1.66 16 35 H 0.09 1.13 7.97 -2.39 -0.02 1.11 16 36 H 0.08 2.02 7.62 -2.39 -0.02 2.00 16 37 H 0.14 2.96 3.43 -19.77 -0.07 2.89 16 38 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 41 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 43 H 0.07 4.41 5.21 -2.39 -0.01 4.39 16 44 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -80.01 330.45 4.16 -75.85 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.91 Total: 14.49 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 5.94 Total: 6.24 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -4.66 Total: -108.24 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -0.06 Total: -35.83 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -80.01 4.16 -75.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849420335.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.881 kcal (2) G-P(sol) polarization free energy of solvation -80.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds