Wall clock time and date at job start Mon Mar 30 2020 01:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47200 * 2 1 4 4 C 1.52995 * 109.46819 * 120.00119 * 2 1 3 5 5 N 1.46498 * 109.46971 * 175.00039 * 4 2 1 6 6 C 1.46500 * 120.00046 * 269.99590 * 5 4 2 7 7 C 1.34777 * 120.00120 * 89.99863 * 5 4 2 8 8 O 1.21589 * 120.00140 * 353.61415 * 7 5 4 9 9 N 1.34781 * 119.99898 * 173.61712 * 7 5 4 10 10 C 1.46931 * 120.63108 * 339.74996 * 9 7 5 11 11 C 1.53189 * 108.77600 * 233.59162 * 10 9 7 12 12 C 1.53044 * 109.31358 * 305.36215 * 11 10 9 13 13 C 1.53047 * 109.53288 * 61.36845 * 12 11 10 14 14 H 1.08997 * 109.49916 * 58.62167 * 13 12 11 15 15 C 1.50703 * 109.49625 * 178.68340 * 13 12 11 16 16 H 1.08008 * 119.99572 * 0.02562 * 15 13 12 17 17 C 1.37869 * 119.99916 * 179.72370 * 15 13 12 18 18 N 1.31508 * 120.00542 * 0.27760 * 17 15 13 19 19 Si 1.86804 * 119.99781 * 180.27458 * 17 15 13 20 20 H 1.48501 * 109.47346 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.46931 * 120.00293 * 19 17 15 22 22 H 1.48500 * 109.46958 * 240.00012 * 19 17 15 23 23 C 1.46921 * 120.62952 * 159.73457 * 9 7 5 24 24 H 1.09003 * 109.47344 * 300.00626 * 1 2 3 25 25 H 1.09001 * 109.46937 * 60.00194 * 1 2 3 26 26 H 1.08999 * 109.47299 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46716 * 239.99791 * 2 1 3 28 28 H 1.09003 * 109.46891 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47017 * 299.99756 * 3 2 1 30 30 H 1.09000 * 109.46835 * 59.99818 * 3 2 1 31 31 H 1.08996 * 109.47884 * 54.99367 * 4 2 1 32 32 H 1.09006 * 109.47200 * 294.99838 * 4 2 1 33 33 H 1.09004 * 109.47199 * 272.17995 * 6 5 4 34 34 H 1.09003 * 109.46969 * 32.17777 * 6 5 4 35 35 H 1.09000 * 109.47436 * 152.17714 * 6 5 4 36 36 H 1.09001 * 109.58015 * 113.80240 * 10 9 7 37 37 H 1.09002 * 109.58168 * 353.38213 * 10 9 7 38 38 H 1.09002 * 109.49668 * 185.41808 * 11 10 9 39 39 H 1.08995 * 109.52549 * 65.33419 * 11 10 9 40 40 H 1.08999 * 109.46025 * 301.35248 * 12 11 10 41 41 H 1.08994 * 109.45130 * 181.38104 * 12 11 10 42 42 H 0.96999 * 120.00671 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.59365 * 6.62199 * 23 9 7 44 44 H 1.09002 * 109.58490 * 246.19795 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.1257 -1.9920 0.5613 7 6 4.2675 0.1492 1.7156 8 8 3.7534 1.1689 2.1331 9 7 5.6049 -0.0056 1.7778 10 6 6.2079 -1.3436 1.7064 11 6 7.1292 -1.5344 2.9153 12 6 8.1438 -0.3896 2.9641 13 6 7.4059 0.9416 3.1245 14 1 6.8098 0.9195 4.0368 15 6 8.4071 2.0651 3.2050 16 1 9.4643 1.8514 3.1471 17 6 7.9734 3.3661 3.3463 18 7 6.6862 3.6263 3.4163 19 14 9.2143 4.7595 3.4383 20 1 10.5886 4.2060 3.3375 21 1 8.9784 5.7070 2.3195 22 1 9.0622 5.4730 4.7318 23 6 6.4877 1.1605 1.9180 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6053 -1.7197 1.2953 32 1 1.7516 -0.1583 2.1370 33 1 4.2468 -2.7832 1.3012 34 1 3.4938 -2.3488 -0.2520 35 1 5.1021 -1.7113 0.1664 36 1 6.7870 -1.4347 0.7875 37 1 5.4227 -2.0995 1.7224 38 1 7.6565 -2.4841 2.8245 39 1 6.5356 -1.5337 3.8294 40 1 8.7206 -0.3759 2.0394 41 1 8.8161 -0.5363 3.8094 42 1 6.3811 4.5417 3.5153 43 1 5.8873 2.0568 2.0737 44 1 7.0897 1.2735 1.0164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849420336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:22 Heat of formation + Delta-G solvation = -25.668697 kcal Electronic energy + Delta-G solvation = -22260.762399 eV Core-core repulsion = 19213.352825 eV Total energy + Delta-G solvation = -3047.409574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.62875 -38.78320 -37.25067 -35.96554 -34.63139 -33.15048 -31.56847 -28.69786 -28.04316 -27.47108 -26.76872 -24.70002 -23.40592 -21.66172 -20.87785 -20.22265 -18.54820 -17.69695 -17.45095 -16.91809 -16.50082 -15.77312 -15.70136 -15.22750 -15.02983 -14.70571 -14.52306 -14.40375 -13.86469 -13.78292 -13.66883 -13.44583 -13.23050 -13.02113 -12.90354 -12.71894 -12.43073 -12.26443 -12.12867 -11.92053 -11.78103 -11.65079 -11.57543 -11.38766 -11.11164 -10.91458 -10.56285 -10.50864 -9.64504 -9.05242 -8.08774 -6.27350 1.38938 1.39902 1.52564 1.81727 2.25294 2.41710 3.02182 3.19682 3.91508 3.96982 4.02926 4.16292 4.19216 4.29803 4.45083 4.56921 4.60173 4.63112 4.67129 4.74880 4.81194 4.86016 4.87839 4.89763 4.96120 5.03934 5.10592 5.11362 5.22254 5.28237 5.29550 5.32952 5.43072 5.50795 5.57121 5.70938 5.81441 5.90557 6.00427 6.16500 6.38007 6.86714 7.15543 7.42673 7.75676 8.93991 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022093 B = 0.005825 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.041571 B = 4805.731640 C = 5835.318139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.129 4.129 4 C 0.136 3.864 5 N -0.632 5.632 6 C 0.062 3.938 7 C 0.693 3.307 8 O -0.625 6.625 9 N -0.635 5.635 10 C 0.078 3.922 11 C -0.129 4.129 12 C -0.104 4.104 13 C 0.038 3.962 14 H -0.021 1.021 15 C -0.536 4.536 16 H 0.061 0.939 17 C 0.008 3.992 18 N -0.914 5.914 19 Si 0.958 3.042 20 H -0.259 1.259 21 H -0.282 1.282 22 H -0.283 1.283 23 C 0.149 3.851 24 H 0.046 0.954 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.022 0.978 29 H 0.052 0.948 30 H 0.030 0.970 31 H 0.112 0.888 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.134 0.866 38 H 0.103 0.897 39 H 0.040 0.960 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.258 0.742 43 H 0.070 0.930 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.790 -15.894 -9.056 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 C -0.187 4.187 4 C 0.014 3.986 5 N -0.370 5.370 6 C -0.078 4.078 7 C 0.396 3.604 8 O -0.505 6.505 9 N -0.372 5.372 10 C -0.042 4.042 11 C -0.167 4.167 12 C -0.141 4.141 13 C 0.018 3.982 14 H -0.003 1.003 15 C -0.575 4.575 16 H 0.080 0.920 17 C -0.191 4.191 18 N -0.553 5.553 19 Si 0.783 3.217 20 H -0.183 1.183 21 H -0.207 1.207 22 H -0.209 1.209 23 C 0.026 3.974 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.130 0.870 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.179 -15.220 -8.814 19.397 hybrid contribution 0.704 1.644 0.508 1.859 sum -7.474 -13.576 -8.307 17.583 Atomic orbital electron populations 1.21728 0.92899 1.02984 1.01895 1.21488 0.97037 0.95119 0.98630 1.21695 0.99543 0.97478 0.99938 1.21521 0.77612 1.01751 0.97765 1.47158 1.06435 1.22338 1.61093 1.22600 1.00108 0.86881 0.98249 1.16312 0.81824 0.83386 0.78896 1.90893 1.73142 1.31302 1.55185 1.47536 1.03839 1.08961 1.76858 1.23062 0.98610 0.84320 0.98255 1.21976 0.97570 0.99125 0.98061 1.21496 0.97514 0.94542 1.00588 1.18902 0.93329 0.93495 0.92433 1.00280 1.21563 0.93351 0.92145 1.50421 0.92030 1.25922 0.96784 1.01700 0.94668 1.70142 1.14977 1.19973 1.50161 0.85506 0.79676 0.79049 0.77438 1.18307 1.20750 1.20934 1.21449 0.91476 0.87575 0.96885 0.93514 0.91966 0.90253 0.89997 0.95890 0.92892 0.95038 0.87000 0.93293 0.90005 0.88878 0.90135 0.90405 0.84871 0.87877 0.94108 0.92408 0.93482 0.93291 0.91117 0.95062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.19 71.98 0.66 -1.77 16 2 C -0.10 -2.42 3.13 -10.79 -0.03 -2.45 16 3 C -0.13 -4.26 7.85 71.98 0.57 -3.70 16 4 C 0.14 3.44 5.00 86.38 0.43 3.87 16 5 N -0.63 -18.50 2.76 -889.53 -2.45 -20.95 16 6 C 0.06 1.12 8.57 127.77 1.10 2.22 16 7 C 0.69 29.36 6.77 179.05 1.21 30.57 16 8 O -0.63 -33.37 13.24 -4.00 -0.05 -33.42 16 9 N -0.64 -26.47 2.90 -836.89 -2.43 -28.90 16 10 C 0.08 2.26 4.38 86.36 0.38 2.64 16 11 C -0.13 -4.02 6.08 30.67 0.19 -3.84 16 12 C -0.10 -4.19 5.11 30.62 0.16 -4.04 16 13 C 0.04 2.01 2.25 -11.46 -0.03 1.98 16 14 H -0.02 -1.30 8.14 -2.39 -0.02 -1.32 16 15 C -0.54 -30.63 8.57 25.60 0.22 -30.41 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 17 C 0.01 0.50 5.30 84.65 0.45 0.94 16 18 N -0.91 -57.75 11.39 21.44 0.24 -57.50 16 19 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 23 C 0.15 7.77 5.40 86.36 0.47 8.24 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.02 0.91 5.93 -2.39 -0.01 0.89 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.03 1.18 7.91 -2.39 -0.02 1.16 16 31 H 0.11 1.84 8.07 -2.39 -0.02 1.83 16 32 H 0.05 1.56 7.52 -2.38 -0.02 1.54 16 33 H 0.08 1.10 6.70 -2.38 -0.02 1.09 16 34 H 0.09 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.08 1.56 5.06 -2.39 -0.01 1.54 16 36 H 0.08 1.95 7.60 -2.39 -0.02 1.93 16 37 H 0.13 2.90 3.49 -11.30 -0.04 2.86 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 43 H 0.07 4.42 5.23 -2.39 -0.01 4.41 16 44 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -78.35 329.95 4.02 -74.33 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.93 Total: 14.67 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 5.76 Total: 4.24 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -4.64 Total: -107.36 kcal Atomic # 8 Polarization: -33.37 SS G_CDS: -0.05 Total: -33.42 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -78.35 4.02 -74.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849420336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.663 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds