Wall clock time and date at job start Mon Mar 30 2020 01:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46917 * 2 1 4 4 C 1.53000 * 109.47012 * 119.99745 * 2 1 3 5 5 N 1.46507 * 109.46918 * 65.00248 * 4 2 1 6 6 C 1.46495 * 119.99975 * 269.99454 * 5 4 2 7 7 C 1.50696 * 109.47762 * 270.00495 * 6 5 4 8 8 H 1.08007 * 119.99377 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00414 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00250 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 120.00067 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47566 * 89.99495 * 11 9 7 13 13 H 1.48501 * 109.47240 * 209.99903 * 11 9 7 14 14 H 1.48498 * 109.46941 * 329.99869 * 11 9 7 15 15 C 1.34773 * 120.00119 * 89.99934 * 5 4 2 16 16 O 1.21276 * 120.00151 * 179.97438 * 15 5 4 17 17 C 1.50706 * 119.99959 * 0.02562 * 15 5 4 18 18 N 1.46905 * 109.47059 * 180.02562 * 17 15 5 19 19 C 1.48560 * 110.99577 * 189.99748 * 18 17 15 20 20 C 1.54378 * 104.69549 * 200.89794 * 19 18 17 21 21 C 1.54571 * 104.91190 * 23.88545 * 20 19 18 22 22 C 1.48555 * 110.99889 * 74.58229 * 18 17 15 23 23 H 1.09003 * 109.47160 * 60.00405 * 1 2 3 24 24 H 1.09009 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47463 * 299.99924 * 1 2 3 26 26 H 1.09001 * 109.46979 * 239.99565 * 2 1 3 27 27 H 1.09008 * 109.47104 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47276 * 299.99714 * 3 2 1 29 29 H 1.09000 * 109.47184 * 60.00228 * 3 2 1 30 30 H 1.09001 * 109.47426 * 305.00353 * 4 2 1 31 31 H 1.09004 * 109.47206 * 184.99733 * 4 2 1 32 32 H 1.09004 * 109.47156 * 30.00671 * 6 5 4 33 33 H 1.09001 * 109.46973 * 149.99782 * 6 5 4 34 34 H 0.96991 * 119.99955 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47305 * 60.00018 * 17 15 5 36 36 H 1.08997 * 109.46731 * 300.00115 * 17 15 5 37 37 H 1.09002 * 110.41441 * 319.73871 * 19 18 17 38 38 H 1.09002 * 110.41248 * 82.06172 * 19 18 17 39 39 H 1.09006 * 110.32557 * 142.80924 * 20 19 18 40 40 H 1.08996 * 110.32821 * 265.02105 * 20 19 18 41 41 H 1.08995 * 110.29758 * 241.08109 * 21 20 19 42 42 H 1.09004 * 110.40408 * 118.93657 * 21 20 19 43 43 H 1.09005 * 110.41154 * 277.81401 * 22 18 17 44 44 H 1.08998 * 110.41848 * 40.13562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1329 1.1906 6 6 0.3746 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2076 8 1 1.5509 -2.8644 3.6566 9 6 -0.4983 -3.3811 3.9575 10 7 -0.3263 -3.7087 5.2196 11 14 -2.1918 -3.5138 3.1807 12 1 -2.3635 -4.8679 2.5957 13 1 -3.2310 -3.2870 4.2170 14 1 -2.3275 -2.4921 2.1117 15 6 2.4715 -3.0330 0.6116 16 8 2.1509 -4.2017 0.5635 17 6 3.7863 -2.5876 0.0251 18 7 4.4875 -3.7474 -0.5418 19 6 5.8827 -3.3967 -0.9128 20 6 6.2965 -4.4715 -1.9408 21 6 4.9662 -4.9819 -2.5400 22 6 3.8652 -4.1721 -1.8221 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2952 32 1 -0.3485 -1.7532 1.6918 33 1 0.0043 -3.4297 1.2092 34 1 -1.0789 -4.0189 5.7470 35 1 4.3992 -2.1384 0.8065 36 1 3.6039 -1.8542 -0.7603 37 1 5.9183 -2.4052 -1.3641 38 1 6.5308 -3.4385 -0.0374 39 1 6.9199 -4.0310 -2.7190 40 1 6.8263 -5.2851 -1.4455 41 1 4.8449 -6.0463 -2.3394 42 1 4.9358 -4.7936 -3.6132 43 1 2.9946 -4.7998 -1.6319 44 1 3.5831 -3.3019 -2.4149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874231546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:40 Heat of formation + Delta-G solvation = -34.825693 kcal Electronic energy + Delta-G solvation = -21755.975274 eV Core-core repulsion = 18708.168623 eV Total energy + Delta-G solvation = -3047.806651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62791 -38.15921 -36.31108 -33.57532 -32.41113 -32.01699 -28.82587 -28.73223 -26.97142 -26.26493 -25.30866 -22.28588 -20.99690 -20.80513 -20.27480 -18.32724 -16.91432 -16.45573 -16.18570 -15.70492 -15.05831 -14.86986 -14.42434 -14.12850 -13.90253 -13.55306 -13.10033 -12.81362 -12.56940 -12.37133 -12.22291 -12.13378 -12.00058 -11.74098 -11.52167 -11.44798 -11.24122 -11.09253 -11.00448 -10.95413 -10.61265 -10.53871 -10.50470 -10.32669 -10.05586 -9.47275 -8.94698 -8.53991 -8.27403 -7.61491 -6.04211 -4.01988 3.31044 3.36777 3.38945 3.42758 3.67526 4.24255 4.42985 4.65727 4.72595 4.94153 4.97796 5.05012 5.10739 5.25039 5.27129 5.33666 5.44061 5.47482 5.54991 5.63777 5.68071 5.75531 5.76137 5.78962 5.80879 6.00901 6.02950 6.06168 6.10046 6.13645 6.20407 6.24600 6.44557 6.52650 6.76093 6.93107 6.97396 7.06893 7.43757 7.67313 8.33561 8.52817 8.99555 9.10452 9.56572 11.09472 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.006022 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.817708 B = 4648.159939 C = 5642.309493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.116 3.884 5 N -0.593 5.593 6 C 0.215 3.785 7 C -0.525 4.525 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.899 5.899 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.510 3.490 16 O -0.521 6.521 17 C 0.027 3.973 18 N -0.490 5.490 19 C 0.030 3.970 20 C -0.122 4.122 21 C -0.124 4.124 22 C 0.034 3.966 23 H 0.046 0.954 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 7.841 -15.363 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.009 4.009 5 N -0.326 5.326 6 C 0.095 3.905 7 C -0.564 4.564 8 H 0.092 0.908 9 C -0.130 4.130 10 N -0.537 5.537 11 Si 0.701 3.299 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.191 1.191 15 C 0.296 3.704 16 O -0.397 6.397 17 C -0.104 4.104 18 N -0.214 5.214 19 C -0.098 4.098 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.094 4.094 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 9.075 6.715 -14.792 18.608 hybrid contribution -0.896 0.710 -0.701 1.341 sum 8.179 7.425 -15.493 19.028 Atomic orbital electron populations 1.21940 0.94881 1.02716 1.01162 1.21596 0.96929 0.95965 0.98906 1.21777 1.00614 0.95871 1.01861 1.21552 0.99221 0.82165 0.97933 1.47877 1.21210 1.06466 1.57008 1.19726 0.80649 0.95600 0.94574 1.21360 0.97363 1.44271 0.93405 0.90805 1.24847 0.98786 0.94679 0.94698 1.69899 1.31541 1.44938 1.07362 0.86884 0.84440 0.79292 0.79277 1.19959 1.21127 1.19072 1.20119 0.85063 0.86158 0.79101 1.90655 1.74366 1.17131 1.57517 1.22235 0.95525 0.92610 1.00039 1.65129 1.01115 1.30736 1.24411 1.23147 0.91035 0.96994 0.98615 1.22314 0.97386 0.98588 0.97750 1.22340 0.94221 1.00769 0.98857 1.23179 0.98527 0.98727 0.88940 0.93466 0.91677 0.92383 0.91747 0.92864 0.92853 0.92324 0.89682 0.91583 0.94711 0.94894 0.92647 0.88465 0.92409 0.94130 0.90075 0.91580 0.90977 0.90936 0.91677 0.88891 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 8.18 37.16 0.30 -1.81 16 2 C -0.11 -1.48 3.12 -90.62 -0.28 -1.76 16 3 C -0.14 -1.45 9.19 37.15 0.34 -1.11 16 4 C 0.12 1.81 4.70 -4.04 -0.02 1.79 16 5 N -0.59 -12.15 2.28 -175.06 -0.40 -12.55 16 6 C 0.21 5.25 3.30 -5.20 -0.02 5.23 16 7 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 8 H 0.07 2.36 8.06 -52.48 -0.42 1.94 16 9 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 10 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 11 Si 0.87 21.81 27.47 -169.99 -4.67 17.14 16 12 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 15 C 0.51 10.59 7.52 -10.98 -0.08 10.51 16 16 O -0.52 -13.16 14.81 5.56 0.08 -13.08 16 17 C 0.03 0.43 3.87 -4.97 -0.02 0.41 16 18 N -0.49 -7.62 4.98 -231.41 -1.15 -8.77 16 19 C 0.03 0.35 6.45 -2.18 -0.01 0.34 16 20 C -0.12 -1.24 7.02 -25.18 -0.18 -1.42 16 21 C -0.12 -1.39 7.01 -25.18 -0.18 -1.57 16 22 C 0.03 0.49 5.92 -2.19 -0.01 0.47 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 1.08 5.89 -51.92 -0.31 0.77 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.83 7.30 -51.93 -0.38 0.45 16 27 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 31 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 32 H 0.04 0.81 5.03 -51.93 -0.26 0.54 16 33 H 0.03 0.87 6.85 -51.93 -0.36 0.52 16 34 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 35 H 0.10 1.38 7.34 -51.93 -0.38 1.00 16 36 H 0.06 0.77 6.88 -51.93 -0.36 0.41 16 37 H 0.04 0.42 8.00 -51.93 -0.42 0.00 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.58 7.24 -51.93 -0.38 1.20 16 44 H 0.04 0.48 7.75 -51.93 -0.40 0.08 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -34.03 340.53 -8.63 -42.66 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.81 Total: -0.75 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.60 Total: -2.48 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.78 Total: -48.63 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.03 -8.63 -42.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874231546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.833 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds