Wall clock time and date at job start Mon Mar 30 2020 01:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46917 * 2 1 4 4 C 1.53000 * 109.47012 * 119.99745 * 2 1 3 5 5 N 1.46507 * 109.46918 * 65.00248 * 4 2 1 6 6 C 1.46495 * 119.99975 * 269.99454 * 5 4 2 7 7 C 1.50696 * 109.47762 * 270.00495 * 6 5 4 8 8 H 1.08007 * 119.99377 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00414 * 179.97438 * 7 6 5 10 10 N 1.31520 * 120.00250 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 120.00067 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47566 * 89.99495 * 11 9 7 13 13 H 1.48501 * 109.47240 * 209.99903 * 11 9 7 14 14 H 1.48498 * 109.46941 * 329.99869 * 11 9 7 15 15 C 1.34773 * 120.00119 * 89.99934 * 5 4 2 16 16 O 1.21276 * 120.00151 * 179.97438 * 15 5 4 17 17 C 1.50706 * 119.99959 * 0.02562 * 15 5 4 18 18 N 1.46905 * 109.47059 * 180.02562 * 17 15 5 19 19 C 1.48560 * 110.99577 * 189.99748 * 18 17 15 20 20 C 1.54378 * 104.69549 * 200.89794 * 19 18 17 21 21 C 1.54571 * 104.91190 * 23.88545 * 20 19 18 22 22 C 1.48555 * 110.99889 * 74.58229 * 18 17 15 23 23 H 1.09003 * 109.47160 * 60.00405 * 1 2 3 24 24 H 1.09009 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47463 * 299.99924 * 1 2 3 26 26 H 1.09001 * 109.46979 * 239.99565 * 2 1 3 27 27 H 1.09008 * 109.47104 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47276 * 299.99714 * 3 2 1 29 29 H 1.09000 * 109.47184 * 60.00228 * 3 2 1 30 30 H 1.09001 * 109.47426 * 305.00353 * 4 2 1 31 31 H 1.09004 * 109.47206 * 184.99733 * 4 2 1 32 32 H 1.09004 * 109.47156 * 30.00671 * 6 5 4 33 33 H 1.09001 * 109.46973 * 149.99782 * 6 5 4 34 34 H 0.96991 * 119.99955 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47305 * 60.00018 * 17 15 5 36 36 H 1.08997 * 109.46731 * 300.00115 * 17 15 5 37 37 H 1.09002 * 110.41441 * 319.73871 * 19 18 17 38 38 H 1.09002 * 110.41248 * 82.06172 * 19 18 17 39 39 H 1.09006 * 110.32557 * 142.80924 * 20 19 18 40 40 H 1.08996 * 110.32821 * 265.02105 * 20 19 18 41 41 H 1.08995 * 110.29758 * 241.08109 * 21 20 19 42 42 H 1.09004 * 110.40408 * 118.93657 * 21 20 19 43 43 H 1.09005 * 110.41154 * 277.81401 * 22 18 17 44 44 H 1.08998 * 110.41848 * 40.13562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1329 1.1906 6 6 0.3746 -2.5659 1.7613 7 6 0.5715 -2.9408 3.2076 8 1 1.5509 -2.8644 3.6566 9 6 -0.4983 -3.3811 3.9575 10 7 -0.3263 -3.7087 5.2196 11 14 -2.1918 -3.5138 3.1807 12 1 -2.3635 -4.8679 2.5957 13 1 -3.2310 -3.2870 4.2170 14 1 -2.3275 -2.4921 2.1117 15 6 2.4715 -3.0330 0.6116 16 8 2.1509 -4.2017 0.5635 17 6 3.7863 -2.5876 0.0251 18 7 4.4875 -3.7474 -0.5418 19 6 5.8827 -3.3967 -0.9128 20 6 6.2965 -4.4715 -1.9408 21 6 4.9662 -4.9819 -2.5400 22 6 3.8652 -4.1721 -1.8221 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2952 32 1 -0.3485 -1.7532 1.6918 33 1 0.0043 -3.4297 1.2092 34 1 -1.0789 -4.0189 5.7470 35 1 4.3992 -2.1384 0.8065 36 1 3.6039 -1.8542 -0.7603 37 1 5.9183 -2.4052 -1.3641 38 1 6.5308 -3.4385 -0.0374 39 1 6.9199 -4.0310 -2.7190 40 1 6.8263 -5.2851 -1.4455 41 1 4.8449 -6.0463 -2.3394 42 1 4.9358 -4.7936 -3.6132 43 1 2.9946 -4.7998 -1.6319 44 1 3.5831 -3.3019 -2.4149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874231546.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:40 Heat of formation + Delta-G solvation = -58.566503 kcal Electronic energy + Delta-G solvation = -21757.004753 eV Core-core repulsion = 18708.168623 eV Total energy + Delta-G solvation = -3048.836130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.07323 -39.31663 -37.71415 -35.34361 -34.17919 -33.29505 -30.59780 -29.72304 -28.00348 -27.55610 -26.77245 -24.11556 -22.18210 -21.69889 -21.38253 -19.84480 -19.13156 -17.88418 -17.51031 -16.84715 -16.53251 -16.28973 -15.85052 -15.51357 -15.19202 -14.83676 -14.52063 -14.24398 -14.04021 -13.76809 -13.61231 -13.23284 -13.19297 -13.00190 -12.93663 -12.70495 -12.52496 -12.41835 -12.22405 -12.08061 -12.00128 -11.96770 -11.77429 -11.59602 -11.54748 -11.34727 -10.82632 -10.58035 -9.43071 -9.28440 -8.34524 -6.38514 1.29187 1.33856 1.41821 1.83991 2.23093 2.29363 2.99720 3.10825 3.60538 3.74242 3.88668 3.96385 4.01587 4.12185 4.21122 4.29984 4.34871 4.36737 4.62424 4.65019 4.67854 4.71327 4.75431 4.89137 4.90572 4.90828 4.95282 5.01506 5.06937 5.10273 5.10972 5.22960 5.27078 5.29862 5.43120 5.44535 5.52289 5.69384 5.91782 5.99076 6.26151 6.62676 6.75969 7.22223 7.50042 8.82831 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016576 B = 0.006022 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.817708 B = 4648.159939 C = 5642.309493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C -0.137 4.137 4 C 0.109 3.891 5 N -0.598 5.598 6 C 0.228 3.772 7 C -0.534 4.534 8 H 0.027 0.973 9 C 0.011 3.989 10 N -0.946 5.946 11 Si 0.944 3.056 12 H -0.278 1.278 13 H -0.273 1.273 14 H -0.238 1.238 15 C 0.498 3.502 16 O -0.579 6.579 17 C 0.042 3.958 18 N -0.527 5.527 19 C 0.030 3.970 20 C -0.117 4.117 21 C -0.120 4.120 22 C 0.033 3.967 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.010 0.990 34 H 0.268 0.732 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.089 0.911 43 H 0.051 0.949 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.200 10.183 -18.016 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.195 4.195 4 C -0.014 4.014 5 N -0.329 5.329 6 C 0.106 3.894 7 C -0.572 4.572 8 H 0.045 0.955 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.767 3.233 12 H -0.204 1.204 13 H -0.198 1.198 14 H -0.161 1.161 15 C 0.286 3.714 16 O -0.458 6.458 17 C -0.089 4.089 18 N -0.252 5.252 19 C -0.097 4.097 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.095 4.095 23 H 0.089 0.911 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.077 0.923 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.915 9.117 -17.462 22.053 hybrid contribution -1.066 -0.038 0.188 1.084 sum 8.849 9.078 -17.274 21.426 Atomic orbital electron populations 1.21952 0.95907 1.00938 1.02161 1.21522 0.96038 0.97644 0.97266 1.21733 1.01715 0.93411 1.02600 1.21880 1.00958 0.79425 0.99096 1.47970 1.19966 1.08716 1.56291 1.19340 0.83337 0.95331 0.91391 1.21606 0.95444 1.44381 0.95804 0.95509 1.25823 1.03623 0.94082 0.95110 1.70052 1.33209 1.46235 1.09137 0.85774 0.78675 0.79681 0.79212 1.20386 1.19760 1.16103 1.21199 0.86531 0.85384 0.78293 1.90621 1.75838 1.19619 1.59756 1.22126 0.92412 0.93258 1.01094 1.65035 1.03152 1.31432 1.25561 1.23241 0.88478 0.98655 0.99309 1.22334 0.96885 0.98234 0.98055 1.22334 0.93827 0.99598 1.00052 1.23113 0.98165 0.99055 0.89118 0.91117 0.94720 0.92797 0.91057 0.91122 0.91283 0.92456 0.91140 0.88881 0.92799 0.97173 0.92319 0.86911 0.89203 0.91768 0.89950 0.88647 0.91275 0.92166 0.89197 0.93022 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 8.18 71.98 0.59 -3.40 16 2 C -0.11 -2.43 3.12 -10.79 -0.03 -2.46 16 3 C -0.14 -2.22 9.19 71.98 0.66 -1.56 16 4 C 0.11 3.27 4.70 86.38 0.41 3.68 16 5 N -0.60 -24.75 2.28 -826.15 -1.88 -26.64 16 6 C 0.23 11.43 3.30 85.63 0.28 11.71 16 7 C -0.53 -32.36 9.94 25.60 0.25 -32.10 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 9 C 0.01 0.69 5.47 84.65 0.46 1.15 16 10 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 11 Si 0.94 45.71 27.47 68.60 1.88 47.60 16 12 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 14 H -0.24 -10.34 6.54 99.48 0.65 -9.69 16 15 C 0.50 21.01 7.52 87.66 0.66 21.67 16 16 O -0.58 -30.68 14.81 -3.02 -0.04 -30.72 16 17 C 0.04 1.25 3.87 85.56 0.33 1.58 16 18 N -0.53 -15.82 4.98 -886.04 -4.41 -20.23 16 19 C 0.03 0.62 6.45 86.45 0.56 1.17 16 20 C -0.12 -2.04 7.02 31.60 0.22 -1.82 16 21 C -0.12 -2.49 7.01 31.60 0.22 -2.27 16 22 C 0.03 0.93 5.92 86.45 0.51 1.44 16 23 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.03 1.10 5.89 -2.38 -0.01 1.09 16 25 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.07 1.58 7.30 -2.39 -0.02 1.56 16 27 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 31 H 0.09 2.27 6.44 -2.38 -0.02 2.26 16 32 H 0.05 2.49 5.03 -2.38 -0.01 2.48 16 33 H 0.01 0.56 6.85 -2.39 -0.02 0.54 16 34 H 0.27 16.10 8.31 -92.72 -0.77 15.33 16 35 H 0.11 2.95 7.34 -2.39 -0.02 2.93 16 36 H 0.09 2.06 6.88 -2.39 -0.02 2.05 16 37 H 0.06 1.02 8.00 -2.39 -0.02 1.01 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 43 H 0.05 1.84 7.24 -2.38 -0.02 1.83 16 44 H 0.05 1.24 7.75 -2.39 -0.02 1.22 16 Total: -1.00 -79.71 340.53 1.86 -77.84 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: 0.89 Total: 14.32 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.13 Total: -1.21 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -5.99 Total: -107.83 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.04 Total: -30.72 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.88 Total: 47.60 kcal Total: -79.71 1.86 -77.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874231546.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.277 kcal (2) G-P(sol) polarization free energy of solvation -79.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds