Wall clock time and date at job start Mon Mar 30 2020 00:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47382 * 2 1 4 4 C 1.53000 * 109.46984 * 120.00248 * 2 1 3 5 5 C 1.50703 * 109.47454 * 64.99347 * 4 2 1 6 6 O 1.21282 * 119.99595 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00035 * 180.02562 * 5 4 2 8 8 C 1.47617 * 118.74786 * 359.97438 * 7 5 4 9 9 C 1.53829 * 111.28570 * 138.30515 * 8 7 5 10 10 C 1.51275 * 109.64384 * 319.99101 * 9 8 7 11 11 N 1.46191 * 109.09822 * 92.39722 * 10 9 8 12 12 C 1.46904 * 111.00191 * 144.76350 * 11 10 9 13 13 C 1.50699 * 109.46966 * 64.59393 * 12 11 10 14 14 H 1.08002 * 120.00245 * 0.85266 * 13 12 11 15 15 C 1.37878 * 119.99876 * 180.84919 * 13 12 11 16 16 N 1.31509 * 120.00080 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99860 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46808 * 90.00067 * 17 15 13 19 19 H 1.48502 * 109.47025 * 210.00108 * 17 15 13 20 20 H 1.48496 * 109.47202 * 330.00010 * 17 15 13 21 21 C 1.41449 * 116.34906 * 272.96567 * 11 10 9 22 22 C 1.44880 * 118.74634 * 180.02562 * 7 5 4 23 23 H 1.08999 * 109.47266 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46982 * 300.00232 * 1 2 3 25 25 H 1.09001 * 109.46632 * 60.00136 * 1 2 3 26 26 H 1.09002 * 109.46982 * 239.99768 * 2 1 3 27 27 H 1.09002 * 109.47111 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47126 * 299.99561 * 3 2 1 29 29 H 1.08996 * 109.47570 * 59.99635 * 3 2 1 30 30 H 1.09002 * 109.47153 * 304.99695 * 4 2 1 31 31 H 1.08995 * 109.47230 * 184.99872 * 4 2 1 32 32 H 1.08996 * 109.11695 * 258.78652 * 8 7 5 33 33 H 1.09001 * 109.10921 * 17.91481 * 8 7 5 34 34 H 1.08996 * 109.44667 * 199.92765 * 9 8 7 35 35 H 1.08999 * 109.42699 * 80.03435 * 9 8 7 36 36 H 1.09010 * 109.53041 * 332.51062 * 10 9 8 37 37 H 1.08996 * 109.53447 * 212.28486 * 10 9 8 38 38 H 1.08999 * 109.47382 * 184.59466 * 12 11 10 39 39 H 1.08997 * 109.46862 * 304.59887 * 12 11 10 40 40 H 0.97004 * 119.99957 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.38798 * 183.64299 * 21 11 10 42 42 H 1.09004 * 109.38180 * 303.33292 * 21 11 10 43 43 H 1.09004 * 109.43566 * 149.65435 * 22 7 5 44 44 H 1.08999 * 109.43604 * 29.78713 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 -2.1734 1.1889 6 8 1.0115 -2.5903 0.2400 7 7 1.9843 -3.0085 2.1896 8 6 2.7512 -2.4717 3.3309 9 6 2.2324 -3.0332 4.6658 10 6 0.7214 -3.1004 4.6364 11 7 0.3105 -4.4230 4.1684 12 6 -0.9154 -4.8642 4.8471 13 6 -2.0531 -3.9489 4.4746 14 1 -1.8857 -3.1303 3.7903 15 6 -3.3077 -4.1565 5.0074 16 7 -3.5114 -5.1530 5.8411 17 14 -4.7182 -3.0222 4.5451 18 1 -5.4109 -3.5575 3.3456 19 1 -5.6778 -2.9396 5.6754 20 1 -4.1870 -1.6680 4.2468 21 6 0.2015 -4.5874 2.7677 22 6 1.5873 -4.3992 2.1034 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4423 -0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6054 -0.2618 2.1370 31 1 3.1262 -0.6444 1.2952 32 1 3.8008 -2.7410 3.2140 33 1 2.6606 -1.3855 3.3424 34 1 2.5510 -2.3836 5.4810 35 1 2.6371 -4.0334 4.8202 36 1 0.3359 -2.3380 3.9592 37 1 0.3294 -2.9306 5.6392 38 1 -1.1535 -5.8829 4.5412 39 1 -0.7638 -4.8349 5.9261 40 1 -4.3940 -5.2988 6.2162 41 1 -0.1717 -5.5878 2.5488 42 1 -0.4939 -3.8483 2.3698 43 1 2.3227 -5.0188 2.6167 44 1 1.5313 -4.6962 1.0562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879758651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:50 Heat of formation + Delta-G solvation = -42.502365 kcal Electronic energy + Delta-G solvation = -22049.209309 eV Core-core repulsion = 19001.069772 eV Total energy + Delta-G solvation = -3048.139537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.21256 -37.85251 -35.58209 -34.95599 -32.48964 -32.15876 -29.49455 -27.51457 -27.06054 -26.11074 -25.18681 -22.71168 -21.77316 -20.31835 -19.63939 -18.47334 -17.01104 -16.59481 -16.00198 -15.35684 -14.95948 -14.84157 -14.68240 -14.11155 -13.86150 -13.46627 -13.22417 -13.03333 -12.65919 -12.37439 -12.25201 -11.94154 -11.84145 -11.70257 -11.31081 -11.15226 -10.99410 -10.91411 -10.85481 -10.77841 -10.61205 -10.57743 -10.34284 -10.22003 -9.84286 -9.52268 -9.36892 -8.43903 -8.29594 -7.09257 -6.01629 -4.11203 2.86566 3.27457 3.28223 3.34789 3.38313 4.41583 4.59324 4.75560 4.86161 4.91391 5.15438 5.21612 5.24348 5.28819 5.43344 5.44880 5.55909 5.56775 5.72336 5.77245 5.79723 5.90232 5.93212 5.94640 5.96982 6.12466 6.13517 6.20151 6.36338 6.43143 6.55739 6.57557 6.74067 6.77670 7.01833 7.35843 7.52522 7.61806 7.90127 8.11121 8.30825 8.45592 8.56930 8.99676 9.56219 11.02539 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.006135 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.395087 B = 4563.127098 C = 5502.765050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.080 4.080 3 C -0.147 4.147 4 C -0.137 4.137 5 C 0.507 3.493 6 O -0.539 6.539 7 N -0.603 5.603 8 C 0.109 3.891 9 C -0.133 4.133 10 C 0.086 3.914 11 N -0.566 5.566 12 C 0.196 3.804 13 C -0.546 4.546 14 H 0.053 0.947 15 C 0.065 3.935 16 N -0.891 5.891 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.075 3.925 22 C 0.114 3.886 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.028 0.972 39 H 0.030 0.970 40 H 0.262 0.738 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.075 0.925 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.345 9.032 -6.337 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.099 4.099 3 C -0.204 4.204 4 C -0.177 4.177 5 C 0.295 3.705 6 O -0.417 6.417 7 N -0.336 5.336 8 C -0.013 4.013 9 C -0.172 4.172 10 C -0.042 4.042 11 N -0.290 5.290 12 C 0.071 3.929 13 C -0.586 4.586 14 H 0.071 0.929 15 C -0.137 4.137 16 N -0.530 5.530 17 Si 0.715 3.285 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.056 4.056 22 C -0.009 4.009 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.048 0.952 43 H 0.094 0.906 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 14.232 8.418 -6.594 17.801 hybrid contribution -1.561 1.135 -0.261 1.947 sum 12.671 9.553 -6.854 17.285 Atomic orbital electron populations 1.21961 0.94611 1.03743 1.00831 1.20853 0.96765 0.95043 0.97191 1.21861 1.00589 0.96078 1.01899 1.21818 1.02264 0.92858 1.00728 1.20713 0.79221 0.88334 0.82228 1.90645 1.39669 1.77732 1.33657 1.47875 1.55212 1.10029 1.20442 1.22021 0.94366 0.98478 0.86474 1.21985 0.98202 1.02071 0.94966 1.21179 0.92449 0.90391 1.00222 1.58875 1.37721 1.25132 1.07282 1.19742 0.83533 0.95546 0.94096 1.21765 0.95069 1.14208 1.27522 0.92883 1.24945 0.98662 0.95256 0.94843 1.69936 1.22718 1.29671 1.30704 0.86673 0.82396 0.81307 0.78129 1.20595 1.21119 1.20039 1.21375 0.94195 1.01188 0.88806 1.21730 0.97328 0.80787 1.01060 0.90455 0.93367 0.93190 0.90644 0.92871 0.92552 0.92666 0.89032 0.89379 0.92217 0.90598 0.91093 0.90437 0.95267 0.91229 0.95423 0.95189 0.92836 0.90934 0.95183 0.90628 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.93 37.16 0.33 -1.76 16 2 C -0.08 -0.93 2.57 -90.62 -0.23 -1.16 16 3 C -0.15 -1.33 9.19 37.15 0.34 -0.98 16 4 C -0.14 -1.59 3.51 -27.88 -0.10 -1.68 16 5 C 0.51 7.86 7.34 -10.99 -0.08 7.78 16 6 O -0.54 -10.19 13.40 5.56 0.07 -10.12 16 7 N -0.60 -8.93 2.18 -172.39 -0.38 -9.31 16 8 C 0.11 1.28 5.99 -3.00 -0.02 1.26 16 9 C -0.13 -1.80 5.78 -27.17 -0.16 -1.95 16 10 C 0.09 1.59 4.50 -5.08 -0.02 1.57 16 11 N -0.57 -11.81 4.00 -240.90 -0.96 -12.77 16 12 C 0.20 5.00 4.85 -4.97 -0.02 4.98 16 13 C -0.55 -15.20 7.96 -34.44 -0.27 -15.47 16 14 H 0.05 1.51 6.79 -52.49 -0.36 1.15 16 15 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 16 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 17 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.08 1.51 5.00 -5.71 -0.03 1.48 16 22 C 0.11 1.86 5.52 -3.95 -0.02 1.83 16 23 H 0.08 1.30 5.95 -51.93 -0.31 0.99 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 1.02 7.41 -51.93 -0.38 0.63 16 31 H 0.09 0.81 8.04 -51.93 -0.42 0.39 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.76 5.87 -51.93 -0.30 0.45 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.09 7.98 -51.93 -0.41 0.67 16 36 H 0.03 0.58 7.24 -51.92 -0.38 0.21 16 37 H 0.07 1.39 7.58 -51.93 -0.39 0.99 16 38 H 0.03 0.76 7.92 -51.93 -0.41 0.35 16 39 H 0.03 0.81 7.94 -51.93 -0.41 0.40 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.07 1.49 7.84 -51.93 -0.41 1.08 16 42 H 0.03 0.71 7.08 -51.93 -0.37 0.34 16 43 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 44 H 0.08 1.30 7.28 -51.93 -0.38 0.92 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -30.99 336.63 -8.72 -39.71 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.86 Total: -1.52 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.38 Total: -2.36 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.60 Total: -47.67 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.99 -8.72 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879758651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.791 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds