Wall clock time and date at job start Mon Mar 30 2020 00:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47382 * 2 1 4 4 C 1.53000 * 109.46984 * 120.00248 * 2 1 3 5 5 C 1.50703 * 109.47454 * 64.99347 * 4 2 1 6 6 O 1.21282 * 119.99595 * 0.02562 * 5 4 2 7 7 N 1.34774 * 120.00035 * 180.02562 * 5 4 2 8 8 C 1.47617 * 118.74786 * 359.97438 * 7 5 4 9 9 C 1.53829 * 111.28570 * 138.30515 * 8 7 5 10 10 C 1.51275 * 109.64384 * 319.99101 * 9 8 7 11 11 N 1.46191 * 109.09822 * 92.39722 * 10 9 8 12 12 C 1.46904 * 111.00191 * 144.76350 * 11 10 9 13 13 C 1.50699 * 109.46966 * 64.59393 * 12 11 10 14 14 H 1.08002 * 120.00245 * 0.85266 * 13 12 11 15 15 C 1.37878 * 119.99876 * 180.84919 * 13 12 11 16 16 N 1.31509 * 120.00080 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99860 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46808 * 90.00067 * 17 15 13 19 19 H 1.48502 * 109.47025 * 210.00108 * 17 15 13 20 20 H 1.48496 * 109.47202 * 330.00010 * 17 15 13 21 21 C 1.41449 * 116.34906 * 272.96567 * 11 10 9 22 22 C 1.44880 * 118.74634 * 180.02562 * 7 5 4 23 23 H 1.08999 * 109.47266 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46982 * 300.00232 * 1 2 3 25 25 H 1.09001 * 109.46632 * 60.00136 * 1 2 3 26 26 H 1.09002 * 109.46982 * 239.99768 * 2 1 3 27 27 H 1.09002 * 109.47111 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47126 * 299.99561 * 3 2 1 29 29 H 1.08996 * 109.47570 * 59.99635 * 3 2 1 30 30 H 1.09002 * 109.47153 * 304.99695 * 4 2 1 31 31 H 1.08995 * 109.47230 * 184.99872 * 4 2 1 32 32 H 1.08996 * 109.11695 * 258.78652 * 8 7 5 33 33 H 1.09001 * 109.10921 * 17.91481 * 8 7 5 34 34 H 1.08996 * 109.44667 * 199.92765 * 9 8 7 35 35 H 1.08999 * 109.42699 * 80.03435 * 9 8 7 36 36 H 1.09010 * 109.53041 * 332.51062 * 10 9 8 37 37 H 1.08996 * 109.53447 * 212.28486 * 10 9 8 38 38 H 1.08999 * 109.47382 * 184.59466 * 12 11 10 39 39 H 1.08997 * 109.46862 * 304.59887 * 12 11 10 40 40 H 0.97004 * 119.99957 * 179.97438 * 16 15 13 41 41 H 1.08995 * 109.38798 * 183.64299 * 21 11 10 42 42 H 1.09004 * 109.38180 * 303.33292 * 21 11 10 43 43 H 1.09004 * 109.43566 * 149.65435 * 22 7 5 44 44 H 1.08999 * 109.43604 * 29.78713 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 -2.1734 1.1889 6 8 1.0115 -2.5903 0.2400 7 7 1.9843 -3.0085 2.1896 8 6 2.7512 -2.4717 3.3309 9 6 2.2324 -3.0332 4.6658 10 6 0.7214 -3.1004 4.6364 11 7 0.3105 -4.4230 4.1684 12 6 -0.9154 -4.8642 4.8471 13 6 -2.0531 -3.9489 4.4746 14 1 -1.8857 -3.1303 3.7903 15 6 -3.3077 -4.1565 5.0074 16 7 -3.5114 -5.1530 5.8411 17 14 -4.7182 -3.0222 4.5451 18 1 -5.4109 -3.5575 3.3456 19 1 -5.6778 -2.9396 5.6754 20 1 -4.1870 -1.6680 4.2468 21 6 0.2015 -4.5874 2.7677 22 6 1.5873 -4.3992 2.1034 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1301 1.4423 -0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6054 -0.2618 2.1370 31 1 3.1262 -0.6444 1.2952 32 1 3.8008 -2.7410 3.2140 33 1 2.6606 -1.3855 3.3424 34 1 2.5510 -2.3836 5.4810 35 1 2.6371 -4.0334 4.8202 36 1 0.3359 -2.3380 3.9592 37 1 0.3294 -2.9306 5.6392 38 1 -1.1535 -5.8829 4.5412 39 1 -0.7638 -4.8349 5.9261 40 1 -4.3940 -5.2988 6.2162 41 1 -0.1717 -5.5878 2.5488 42 1 -0.4939 -3.8483 2.3698 43 1 2.3227 -5.0188 2.6167 44 1 1.5313 -4.6962 1.0562 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879758651.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:50 Heat of formation + Delta-G solvation = -61.890376 kcal Electronic energy + Delta-G solvation = -22050.050036 eV Core-core repulsion = 19001.069772 eV Total energy + Delta-G solvation = -3048.980264 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44688 -39.33202 -36.71020 -36.30000 -34.57895 -33.47323 -30.91572 -28.98449 -27.97171 -27.57778 -26.74618 -24.50946 -23.13796 -21.43646 -21.11987 -19.60625 -18.66022 -18.17169 -17.30698 -16.89418 -16.52411 -16.26212 -15.99076 -15.68882 -15.03023 -14.72095 -14.52517 -14.38294 -14.19793 -13.80706 -13.38563 -13.26517 -13.10136 -12.97740 -12.83578 -12.73530 -12.54428 -12.49984 -12.25194 -12.09140 -11.94169 -11.83743 -11.78668 -11.70943 -11.50125 -11.36665 -10.66355 -10.59177 -9.54487 -8.97350 -8.18920 -6.40265 1.29165 1.30786 1.40588 1.69604 2.16247 2.31381 3.03482 3.31542 3.62652 3.86050 3.96591 4.00924 4.13478 4.27233 4.29740 4.35151 4.47239 4.54932 4.65573 4.70824 4.71307 4.74381 4.82404 4.83530 4.92896 4.96553 5.04141 5.09409 5.12937 5.21725 5.25888 5.28259 5.29200 5.41835 5.46796 5.50984 5.67115 5.75866 6.04100 6.26014 6.46730 6.80886 6.83886 7.28515 7.31506 8.81047 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.006135 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.395087 B = 4563.127098 C = 5502.765050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.130 4.130 5 C 0.496 3.504 6 O -0.584 6.584 7 N -0.607 5.607 8 C 0.106 3.894 9 C -0.123 4.123 10 C 0.086 3.914 11 N -0.555 5.555 12 C 0.208 3.792 13 C -0.555 4.555 14 H 0.041 0.959 15 C 0.016 3.984 16 N -0.922 5.922 17 Si 0.950 3.050 18 H -0.278 1.278 19 H -0.273 1.273 20 H -0.272 1.272 21 C 0.080 3.920 22 C 0.129 3.871 23 H 0.037 0.963 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.076 0.924 36 H 0.012 0.988 37 H 0.049 0.951 38 H 0.001 0.999 39 H 0.011 0.989 40 H 0.266 0.734 41 H 0.058 0.942 42 H -0.012 1.012 43 H 0.099 0.901 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.644 11.269 -6.206 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 C -0.197 4.197 4 C -0.169 4.169 5 C 0.286 3.714 6 O -0.464 6.464 7 N -0.339 5.339 8 C -0.014 4.014 9 C -0.161 4.161 10 C -0.042 4.042 11 N -0.279 5.279 12 C 0.081 3.919 13 C -0.594 4.594 14 H 0.059 0.941 15 C -0.183 4.183 16 N -0.561 5.561 17 Si 0.775 3.225 18 H -0.204 1.204 19 H -0.198 1.198 20 H -0.197 1.197 21 C -0.050 4.050 22 C 0.005 3.995 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.143 0.857 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.095 0.905 36 H 0.030 0.970 37 H 0.068 0.932 38 H 0.019 0.981 39 H 0.029 0.971 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.006 0.994 43 H 0.117 0.883 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.566 10.676 -6.444 20.735 hybrid contribution -2.310 0.404 -0.295 2.363 sum 14.257 11.080 -6.739 19.272 Atomic orbital electron populations 1.21934 0.96644 1.01192 1.01331 1.20846 0.95018 0.96989 0.96896 1.21799 1.01777 0.93696 1.02400 1.21881 1.04552 0.89540 1.00921 1.21542 0.78308 0.89963 0.81602 1.90633 1.41505 1.78750 1.35527 1.48047 1.55171 1.09248 1.21434 1.22307 0.95466 0.99795 0.83881 1.21897 0.93506 1.03177 0.97554 1.21282 0.96355 0.88224 0.98301 1.58934 1.34849 1.26820 1.07252 1.19423 0.85241 0.93949 0.93240 1.21918 0.96183 1.14141 1.27197 0.94119 1.25724 1.01156 0.96713 0.94748 1.70033 1.23568 1.31006 1.31506 0.85680 0.79347 0.79321 0.78104 1.20377 1.19759 1.19697 1.21334 0.96281 0.99056 0.88372 1.21429 0.94989 0.82703 1.00359 0.94423 0.93231 0.92333 0.91920 0.90883 0.92276 0.92016 0.87988 0.85650 0.88568 0.88087 0.87803 0.90538 0.96982 0.93246 0.98131 0.97081 0.92448 0.92405 0.99393 0.88312 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 8.93 71.98 0.64 -3.52 16 2 C -0.08 -1.69 2.57 -10.80 -0.03 -1.72 16 3 C -0.14 -2.05 9.19 71.98 0.66 -1.39 16 4 C -0.13 -2.62 3.51 29.85 0.10 -2.52 16 5 C 0.50 14.85 7.34 87.66 0.64 15.49 16 6 O -0.58 -22.61 13.40 -3.04 -0.04 -22.65 16 7 N -0.61 -16.89 2.18 -817.72 -1.78 -18.67 16 8 C 0.11 2.04 5.99 86.45 0.52 2.56 16 9 C -0.12 -2.93 5.78 30.31 0.18 -2.75 16 10 C 0.09 3.17 4.50 85.87 0.39 3.56 16 11 N -0.56 -23.79 4.00 -916.07 -3.66 -27.45 16 12 C 0.21 11.14 4.85 85.56 0.41 11.55 16 13 C -0.56 -32.11 7.96 25.60 0.20 -31.90 16 14 H 0.04 2.41 6.79 -2.91 -0.02 2.39 16 15 C 0.02 0.95 5.46 84.66 0.46 1.41 16 16 N -0.92 -55.64 13.29 21.45 0.28 -55.35 16 17 Si 0.95 45.70 29.54 68.60 2.03 47.72 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 21 C 0.08 3.38 5.00 87.92 0.44 3.82 16 22 C 0.13 4.15 5.52 87.31 0.48 4.63 16 23 H 0.04 1.32 5.95 -2.39 -0.01 1.30 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.52 7.95 -2.39 -0.02 1.50 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.10 1.90 7.41 -2.39 -0.02 1.89 16 31 H 0.13 1.64 8.04 -2.39 -0.02 1.62 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 1.48 5.87 -2.39 -0.01 1.47 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 1.90 7.98 -2.39 -0.02 1.88 16 36 H 0.01 0.48 7.24 -2.38 -0.02 0.46 16 37 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 38 H 0.00 0.03 7.92 -2.39 -0.02 0.01 16 39 H 0.01 0.63 7.94 -2.39 -0.02 0.61 16 40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 41 H 0.06 2.53 7.84 -2.39 -0.02 2.51 16 42 H -0.01 -0.61 7.08 -2.39 -0.02 -0.62 16 43 H 0.10 2.73 8.11 -2.38 -0.02 2.71 16 44 H 0.07 2.45 7.28 -2.39 -0.02 2.43 16 Total: -1.00 -71.82 336.63 2.87 -68.94 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 0.95 Total: 8.23 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.11 Total: -0.77 kcal Atomic # 7 Polarization: -96.31 SS G_CDS: -5.16 Total: -101.47 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.04 Total: -22.65 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Total: -71.82 2.87 -68.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879758651.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.054 kcal (2) G-P(sol) polarization free energy of solvation -71.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds