Wall clock time and date at job start Mon Mar 30 2020 01:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 5 5 N 1.46498 * 109.47059 * 299.99645 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21593 * 119.99949 * 0.28071 * 6 5 4 8 8 N 1.34777 * 120.00128 * 180.27942 * 6 5 4 9 9 C 1.46499 * 120.00065 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47198 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47321 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47554 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99751 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00505 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99687 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47135 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47080 * 119.99899 * 16 14 12 19 19 H 1.48497 * 109.47104 * 240.00206 * 16 14 12 20 20 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 21 21 C 1.52999 * 117.49833 * 128.74355 * 20 2 1 22 22 C 1.53005 * 117.49892 * 60.08254 * 20 2 1 23 23 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 24 24 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 25 25 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 28 28 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 29 29 H 1.09004 * 109.47066 * 179.97438 * 4 2 1 30 30 H 1.08994 * 109.46974 * 60.00060 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99549 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47602 * 299.99940 * 9 8 6 34 34 H 1.09006 * 109.46868 * 59.99976 * 9 8 6 35 35 H 1.09000 * 109.47211 * 300.00689 * 10 9 8 36 36 H 1.09007 * 109.46376 * 60.00147 * 10 9 8 37 37 H 1.09000 * 109.47686 * 300.00577 * 11 10 9 38 38 H 1.08998 * 109.47284 * 60.00513 * 11 10 9 39 39 H 0.97010 * 119.99934 * 180.02562 * 15 14 12 40 40 H 1.09000 * 115.54529 * 274.41717 * 20 2 1 41 41 H 1.08994 * 117.49780 * 359.97438 * 21 20 2 42 42 H 1.08998 * 117.49619 * 145.01919 * 21 20 2 43 43 H 1.08996 * 117.49650 * 214.98099 * 22 20 2 44 44 H 1.08996 * 117.49806 * 0.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.5518 -0.0306 2.4454 6 6 1.8728 -0.4943 3.6694 7 8 2.5719 -1.4830 3.7810 8 7 1.4190 0.1377 4.7699 9 6 1.7684 -0.3660 6.1004 10 6 1.1311 0.5265 7.1673 11 6 1.4955 0.0001 8.5568 12 6 0.8672 0.8787 9.6076 13 1 0.2676 1.7276 9.3138 14 6 1.0579 0.5991 10.9442 15 7 1.7884 -0.4342 11.3021 16 14 0.2785 1.6879 12.2467 17 1 -0.4894 2.7752 11.5883 18 1 -0.6368 0.8756 13.0880 19 1 1.3415 2.2782 13.0992 20 6 2.0401 -0.7212 -1.2493 21 6 3.0763 0.0040 -2.1102 22 6 1.6373 -0.1483 -2.6097 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9564 0.8899 29 1 3.1301 -0.7216 1.2490 30 1 1.6768 -1.7489 1.2492 31 1 0.9939 0.7579 2.3564 32 1 0.8617 0.9266 4.6809 33 1 1.3994 -1.3857 6.2115 34 1 2.8520 -0.3568 6.2194 35 1 1.5004 1.5460 7.0562 36 1 0.0476 0.5176 7.0484 37 1 1.1258 -1.0193 8.6677 38 1 2.5789 0.0086 8.6760 39 1 1.9222 -0.6312 12.2425 40 1 2.1253 -1.8046 -1.1647 41 1 3.3944 0.9951 -1.7868 42 1 3.8431 -0.6023 -2.5923 43 1 1.4581 -0.8547 -3.4201 44 1 1.0095 0.7426 -2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892792274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:57 Heat of formation + Delta-G solvation = -33.756238 kcal Electronic energy + Delta-G solvation = -20078.142371 eV Core-core repulsion = 17030.382095 eV Total energy + Delta-G solvation = -3047.760276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.18990 -39.04640 -35.73826 -34.96891 -33.30165 -32.37969 -30.93834 -27.77907 -27.30077 -26.10061 -23.51810 -22.59566 -22.47948 -20.76856 -20.32307 -18.91468 -18.05332 -16.57735 -16.16620 -16.00352 -15.65790 -14.99269 -14.65030 -14.45348 -14.29925 -13.83010 -13.74047 -13.60436 -12.92074 -12.69126 -12.27309 -12.18807 -11.90820 -11.78417 -11.61853 -11.38432 -11.37238 -11.01500 -10.90775 -10.70151 -10.58761 -10.54824 -10.26084 -10.04771 -9.83774 -9.42155 -9.12647 -9.09330 -8.53970 -8.36125 -6.00526 -4.03446 2.87101 3.30688 3.38099 3.41611 3.43628 3.44503 4.19349 4.33225 4.43802 4.49354 4.51258 4.68245 4.80608 4.82284 5.08553 5.25642 5.30085 5.35275 5.44072 5.45289 5.48959 5.62819 5.65323 5.70159 5.76840 5.77946 5.85036 5.85661 5.96291 6.01435 6.21903 6.51070 6.57371 6.65561 6.84807 7.05439 7.12534 7.66015 7.78902 7.98753 8.20691 8.39744 8.81780 9.03551 9.60617 11.10811 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053539 B = 0.002481 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.855253 B =11285.097190 C =11525.384254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C -0.146 4.146 4 C 0.153 3.847 5 N -0.749 5.749 6 C 0.699 3.301 7 O -0.594 6.594 8 N -0.743 5.743 9 C 0.135 3.865 10 C -0.120 4.120 11 C 0.023 3.977 12 C -0.521 4.521 13 H 0.056 0.944 14 C 0.056 3.944 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.141 4.141 21 C -0.184 4.184 22 C -0.177 4.177 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.393 0.607 32 H 0.393 0.607 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.762 3.306 -27.672 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.046 4.046 3 C -0.203 4.203 4 C 0.028 3.972 5 N -0.407 5.407 6 C 0.399 3.601 7 O -0.472 6.472 8 N -0.397 5.397 9 C 0.012 3.988 10 C -0.158 4.158 11 C -0.015 4.015 12 C -0.559 4.559 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.533 5.533 16 Si 0.721 3.279 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.160 4.160 21 C -0.220 4.220 22 C -0.214 4.214 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.227 0.773 32 H 0.226 0.774 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.032 2.274 -27.386 27.499 hybrid contribution -0.907 1.237 0.710 1.690 sum -1.938 3.511 -26.676 26.975 Atomic orbital electron populations 1.21857 0.93748 1.02403 1.01705 1.20300 0.95986 0.95360 0.92925 1.22019 1.01608 0.94925 1.01782 1.21120 0.98979 0.95425 0.81626 1.45162 1.57551 1.33461 1.04522 1.16026 0.80569 0.83105 0.80432 1.90919 1.42761 1.27567 1.85977 1.45380 1.55986 1.32638 1.05690 1.21498 1.00147 0.98361 0.78800 1.21885 0.99438 0.98160 0.96312 1.19034 0.97203 0.96660 0.88556 1.21243 1.31423 1.12271 0.90986 0.92616 1.25038 0.95354 0.95357 0.98811 1.69981 1.39156 1.27506 1.16617 0.86527 0.79107 0.80563 0.81725 1.19784 1.21015 1.21011 1.22204 1.03894 0.99160 0.90705 1.23175 0.92468 1.02617 1.03790 1.22941 0.98233 1.03216 0.96969 0.92527 0.92318 0.92189 0.91841 0.92323 0.92423 0.91601 0.91709 0.77256 0.77431 0.91997 0.92010 0.92801 0.92804 0.96237 0.96232 0.92995 0.87516 0.88059 0.88979 0.88937 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.14 37.16 0.30 -0.63 16 2 C -0.05 -0.32 0.64 -154.50 -0.10 -0.42 16 3 C -0.15 -0.95 6.90 37.16 0.26 -0.70 16 4 C 0.15 1.55 4.55 -4.04 -0.02 1.53 16 5 N -0.75 -8.29 4.96 -65.23 -0.32 -8.61 16 6 C 0.70 10.98 8.57 -86.92 -0.74 10.24 16 7 O -0.59 -12.04 16.34 5.28 0.09 -11.95 16 8 N -0.74 -11.05 5.56 -65.22 -0.36 -11.41 16 9 C 0.14 2.46 5.67 -4.04 -0.02 2.44 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.52 16 11 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 12 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 13 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.14 -0.96 5.15 -90.62 -0.47 -1.42 16 21 C -0.18 -1.14 9.57 -26.69 -0.26 -1.40 16 22 C -0.18 -1.03 9.39 -26.69 -0.25 -1.28 16 23 H 0.06 0.37 6.86 -51.93 -0.36 0.01 16 24 H 0.06 0.34 7.29 -51.93 -0.38 -0.04 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.44 6.97 -51.93 -0.36 0.08 16 27 H 0.06 0.33 7.07 -51.93 -0.37 -0.03 16 28 H 0.06 0.37 6.86 -51.93 -0.36 0.01 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.39 3.29 6.18 -40.82 -0.25 3.04 16 32 H 0.39 4.63 8.49 -40.82 -0.35 4.29 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.11 0.75 8.11 -51.93 -0.42 0.33 16 41 H 0.10 0.61 5.85 -51.93 -0.30 0.31 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 0.51 7.07 -51.93 -0.37 0.14 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -32.95 350.75 -9.29 -42.24 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -7.70 Total: 1.27 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -1.99 Total: -7.14 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 0.05 Total: -46.27 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.95 -9.29 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892792274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.487 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds