Wall clock time and date at job start Mon Mar 30 2020 01:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 C 1.52996 * 109.47146 * 120.00093 * 2 1 3 5 5 N 1.46498 * 109.47059 * 299.99645 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21593 * 119.99949 * 0.28071 * 6 5 4 8 8 N 1.34777 * 120.00128 * 180.27942 * 6 5 4 9 9 C 1.46499 * 120.00065 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47198 * 179.97438 * 9 8 6 11 11 C 1.52992 * 109.47321 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47554 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99751 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00505 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99687 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00201 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47135 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47080 * 119.99899 * 16 14 12 19 19 H 1.48497 * 109.47104 * 240.00206 * 16 14 12 20 20 C 1.53003 * 109.46927 * 240.00208 * 2 1 3 21 21 C 1.52999 * 117.49833 * 128.74355 * 20 2 1 22 22 C 1.53005 * 117.49892 * 60.08254 * 20 2 1 23 23 H 1.09003 * 109.46863 * 299.99777 * 1 2 3 24 24 H 1.09001 * 109.47172 * 59.99859 * 1 2 3 25 25 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 26 26 H 1.08990 * 109.47258 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46739 * 300.00411 * 3 2 1 28 28 H 1.08999 * 109.47407 * 59.99680 * 3 2 1 29 29 H 1.09004 * 109.47066 * 179.97438 * 4 2 1 30 30 H 1.08994 * 109.46974 * 60.00060 * 4 2 1 31 31 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 32 32 H 0.97000 * 119.99549 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47602 * 299.99940 * 9 8 6 34 34 H 1.09006 * 109.46868 * 59.99976 * 9 8 6 35 35 H 1.09000 * 109.47211 * 300.00689 * 10 9 8 36 36 H 1.09007 * 109.46376 * 60.00147 * 10 9 8 37 37 H 1.09000 * 109.47686 * 300.00577 * 11 10 9 38 38 H 1.08998 * 109.47284 * 60.00513 * 11 10 9 39 39 H 0.97010 * 119.99934 * 180.02562 * 15 14 12 40 40 H 1.09000 * 115.54529 * 274.41717 * 20 2 1 41 41 H 1.08994 * 117.49780 * 359.97438 * 21 20 2 42 42 H 1.08998 * 117.49619 * 145.01919 * 21 20 2 43 43 H 1.08996 * 117.49650 * 214.98099 * 22 20 2 44 44 H 1.08996 * 117.49806 * 0.02562 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.5518 -0.0306 2.4454 6 6 1.8728 -0.4943 3.6694 7 8 2.5719 -1.4830 3.7810 8 7 1.4190 0.1377 4.7699 9 6 1.7684 -0.3660 6.1004 10 6 1.1311 0.5265 7.1673 11 6 1.4955 0.0001 8.5568 12 6 0.8672 0.8787 9.6076 13 1 0.2676 1.7276 9.3138 14 6 1.0579 0.5991 10.9442 15 7 1.7884 -0.4342 11.3021 16 14 0.2785 1.6879 12.2467 17 1 -0.4894 2.7752 11.5883 18 1 -0.6368 0.8756 13.0880 19 1 1.3415 2.2782 13.0992 20 6 2.0401 -0.7212 -1.2493 21 6 3.0763 0.0040 -2.1102 22 6 1.6373 -0.1483 -2.6097 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9564 0.8899 29 1 3.1301 -0.7216 1.2490 30 1 1.6768 -1.7489 1.2492 31 1 0.9939 0.7579 2.3564 32 1 0.8617 0.9266 4.6809 33 1 1.3994 -1.3857 6.2115 34 1 2.8520 -0.3568 6.2194 35 1 1.5004 1.5460 7.0562 36 1 0.0476 0.5176 7.0484 37 1 1.1258 -1.0193 8.6677 38 1 2.5789 0.0086 8.6760 39 1 1.9222 -0.6312 12.2425 40 1 2.1253 -1.8046 -1.1647 41 1 3.3944 0.9951 -1.7868 42 1 3.8431 -0.6023 -2.5923 43 1 1.4581 -0.8547 -3.4201 44 1 1.0095 0.7426 -2.6146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892792274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:57 Heat of formation + Delta-G solvation = -54.779544 kcal Electronic energy + Delta-G solvation = -20079.054010 eV Core-core repulsion = 17030.382095 eV Total energy + Delta-G solvation = -3048.671915 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23342 -39.87299 -37.08634 -36.09108 -35.17683 -33.49489 -32.51708 -28.78483 -28.29402 -27.31794 -25.01211 -23.57260 -23.02409 -22.29496 -21.73918 -19.79303 -18.97318 -18.51982 -17.29491 -16.92033 -16.81221 -16.48897 -15.93443 -15.75422 -15.32675 -15.07937 -14.76299 -14.35413 -14.25050 -13.71995 -13.61667 -13.45087 -13.22466 -12.80326 -12.72016 -12.53592 -12.41087 -12.32858 -11.96396 -11.88935 -11.66831 -11.66208 -11.57014 -11.32370 -11.16846 -11.03325 -10.77082 -10.55417 -10.37758 -9.74301 -8.18756 -6.30153 1.42335 1.42580 1.55782 1.72171 2.15607 2.42635 2.93682 3.15051 3.33979 3.64623 3.77616 3.94471 4.16277 4.18283 4.24448 4.26192 4.28317 4.50322 4.57536 4.71567 4.74069 4.81735 4.88115 4.97030 4.97871 5.00364 5.04812 5.08398 5.12792 5.18256 5.31006 5.34246 5.41385 5.47427 5.47679 5.51777 5.56061 5.72298 5.85412 6.01934 6.23604 6.87481 7.12245 7.39376 7.59332 8.93653 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.053539 B = 0.002481 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.855253 B =11285.097190 C =11525.384254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.034 4.034 3 C -0.146 4.146 4 C 0.153 3.847 5 N -0.727 5.727 6 C 0.696 3.304 7 O -0.643 6.643 8 N -0.730 5.730 9 C 0.150 3.850 10 C -0.099 4.099 11 C 0.022 3.978 12 C -0.538 4.538 13 H 0.067 0.933 14 C -0.006 4.006 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.258 1.258 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.154 4.154 21 C -0.187 4.187 22 C -0.166 4.166 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.410 0.590 32 H 0.412 0.588 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.068 0.932 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.263 0.737 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.304 5.565 -28.945 29.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.034 4.034 3 C -0.203 4.203 4 C 0.028 3.972 5 N -0.384 5.384 6 C 0.395 3.605 7 O -0.525 6.525 8 N -0.386 5.386 9 C 0.025 3.975 10 C -0.137 4.137 11 C -0.015 4.015 12 C -0.577 4.577 13 H 0.085 0.915 14 C -0.203 4.203 15 N -0.576 5.576 16 Si 0.793 3.207 17 H -0.181 1.181 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.173 4.173 21 C -0.224 4.224 22 C -0.203 4.203 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.248 0.752 32 H 0.248 0.752 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.072 0.928 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.614 4.592 -28.712 29.194 hybrid contribution -0.395 0.490 1.045 1.220 sum -3.010 5.082 -27.667 28.290 Atomic orbital electron populations 1.21863 0.92997 1.02211 1.02576 1.20195 0.96425 0.95477 0.91321 1.22023 1.01295 0.94289 1.02662 1.21198 0.98206 0.95308 0.82451 1.44969 1.56710 1.33539 1.03200 1.16202 0.80167 0.82579 0.81524 1.90891 1.44978 1.29840 1.86782 1.45012 1.56136 1.33153 1.04283 1.21069 0.98899 0.97356 0.80190 1.21582 1.00367 0.98624 0.93166 1.18953 0.95225 0.95351 0.92001 1.21707 1.31408 1.12723 0.91814 0.91457 1.26048 0.95869 0.96821 1.01569 1.70126 1.40716 1.29494 1.17274 0.85347 0.78173 0.78751 0.78437 1.18128 1.20619 1.20607 1.22184 1.05039 0.98883 0.91158 1.23238 0.92829 1.02689 1.03608 1.23004 0.97829 1.03368 0.96086 0.92149 0.90944 0.92951 0.92421 0.90906 0.92073 0.93039 0.93051 0.75229 0.75194 0.93625 0.93637 0.91298 0.91307 0.98974 0.98970 0.92837 0.88263 0.87703 0.88898 0.88383 0.87901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.14 71.99 0.59 -0.96 16 2 C -0.03 -0.43 0.64 -52.18 -0.03 -0.46 16 3 C -0.15 -1.57 6.90 71.98 0.50 -1.08 16 4 C 0.15 3.04 4.55 86.38 0.39 3.43 16 5 N -0.73 -15.19 4.96 -478.54 -2.37 -17.57 16 6 C 0.70 21.52 8.57 179.05 1.53 23.05 16 7 O -0.64 -26.58 16.34 -4.01 -0.07 -26.65 16 8 N -0.73 -20.85 5.56 -478.52 -2.66 -23.51 16 9 C 0.15 5.47 5.67 86.38 0.49 5.96 16 10 C -0.10 -3.86 5.27 30.59 0.16 -3.70 16 11 C 0.02 1.18 4.97 29.84 0.15 1.33 16 12 C -0.54 -30.15 9.11 25.60 0.23 -29.91 16 13 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 14 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 15 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 16 Si 0.97 43.93 29.54 68.60 2.03 45.95 16 17 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 C -0.15 -1.91 5.15 -10.79 -0.06 -1.97 16 21 C -0.19 -2.06 9.57 30.62 0.29 -1.77 16 22 C -0.17 -1.59 9.39 30.62 0.29 -1.30 16 23 H 0.06 0.62 6.86 -2.39 -0.02 0.60 16 24 H 0.07 0.63 7.29 -2.39 -0.02 0.62 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.71 6.97 -2.39 -0.02 0.69 16 27 H 0.07 0.61 7.07 -2.39 -0.02 0.59 16 28 H 0.06 0.62 6.86 -2.39 -0.02 0.60 16 29 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.41 5.88 6.18 -92.71 -0.57 5.30 16 32 H 0.41 8.65 8.49 -92.71 -0.79 7.86 16 33 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.81 8.14 -2.38 -0.02 1.80 16 35 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 37 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 38 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 39 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 40 H 0.10 1.37 8.11 -2.39 -0.02 1.35 16 41 H 0.10 1.08 5.85 -2.39 -0.01 1.07 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 0.82 7.07 -2.39 -0.02 0.80 16 Total: -1.00 -72.14 350.75 1.83 -70.32 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -0.38 Total: 15.97 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: 5.00 Total: -7.24 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -4.75 Total: -98.35 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.07 Total: -26.65 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.14 1.83 -70.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892792274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.536 kcal (2) G-P(sol) polarization free energy of solvation -72.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds