Wall clock time and date at job start Mon Mar 30 2020 00:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47040 * 2 1 4 4 C 1.53001 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47561 * 305.00623 * 4 3 2 6 6 C 1.53000 * 109.46598 * 65.00621 * 4 3 2 7 7 C 1.53000 * 109.47256 * 185.00069 * 4 3 2 8 8 N 1.46895 * 109.47350 * 178.03637 * 7 4 3 9 9 C 1.46895 * 111.00069 * 182.99743 * 8 7 4 10 10 C 1.53237 * 109.34016 * 187.25259 * 9 8 7 11 11 N 1.47079 * 108.52106 * 306.16409 * 10 9 8 12 12 C 1.34778 * 120.88358 * 231.18543 * 11 10 9 13 13 O 1.21688 * 120.00058 * 6.04196 * 12 11 10 14 14 C 1.46377 * 119.99708 * 186.04076 * 12 11 10 15 15 H 1.07991 * 120.00348 * 6.39658 * 14 12 11 16 16 C 1.40048 * 119.99500 * 186.38822 * 14 12 11 17 17 N 1.30675 * 120.00074 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99840 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47000 * 270.00270 * 18 16 14 20 20 H 1.48493 * 109.46971 * 30.00209 * 18 16 14 21 21 H 1.48493 * 109.46953 * 150.00405 * 18 16 14 22 22 C 1.47085 * 118.23367 * 51.46105 * 11 10 9 23 23 C 1.46900 * 110.99732 * 307.29433 * 8 7 4 24 24 H 1.09006 * 109.47265 * 59.99614 * 1 2 3 25 25 H 1.09000 * 109.47546 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47403 * 300.00004 * 1 2 3 27 27 H 1.09006 * 109.47233 * 240.00793 * 2 1 3 28 28 H 1.09000 * 109.47371 * 119.99956 * 2 1 3 29 29 H 1.09001 * 109.47148 * 60.00259 * 3 2 1 30 30 H 1.08998 * 109.47742 * 300.00195 * 3 2 1 31 31 H 1.08996 * 109.47606 * 60.00028 * 6 4 3 32 32 H 1.09002 * 109.47033 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47153 * 299.99415 * 6 4 3 34 34 H 1.09001 * 109.46940 * 58.03249 * 7 4 3 35 35 H 1.08998 * 109.47248 * 298.03635 * 7 4 3 36 36 H 1.08999 * 109.49926 * 67.28930 * 9 8 7 37 37 H 1.09004 * 109.49490 * 307.21029 * 9 8 7 38 38 H 1.08999 * 109.63131 * 186.45796 * 10 9 8 39 39 H 1.09006 * 109.79139 * 65.97400 * 10 9 8 40 40 H 0.97004 * 119.99631 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.62813 * 68.24864 * 22 11 10 42 42 H 1.09002 * 109.62520 * 188.83203 * 22 11 10 43 43 H 1.09004 * 109.49582 * 292.70357 * 23 8 7 44 44 H 1.09002 * 109.49632 * 52.76167 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0804 0.8328 -1.3065 7 6 4.0799 2.8796 0.1264 8 7 5.5481 2.8757 0.1743 9 6 6.0721 4.2345 0.3665 10 6 7.5982 4.2139 0.2301 11 7 8.1363 3.2036 1.1536 12 6 9.1282 3.5103 2.0130 13 8 9.5155 4.6598 2.1100 14 6 9.7395 2.4606 2.8297 15 1 9.4697 1.4270 2.6711 16 6 10.6746 2.7967 3.8166 17 7 11.0009 4.0474 4.0087 18 14 11.4554 1.4571 4.8585 19 1 10.6289 1.2279 6.0707 20 1 11.5368 0.2013 4.0702 21 1 12.8211 1.8773 5.2627 22 6 7.5673 1.8479 1.1101 23 6 6.0384 1.9633 1.2160 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9565 -0.8899 31 1 3.7174 1.4222 -2.1485 32 1 5.1704 0.8332 -1.3063 33 1 3.7171 -0.1909 -1.3961 34 1 3.6877 3.3256 1.0403 35 1 3.7460 3.4602 -0.7335 36 1 5.8005 4.5921 1.3597 37 1 5.6484 4.8979 -0.3876 38 1 8.0019 5.1940 0.4841 39 1 7.8739 3.9585 -0.7932 40 1 11.6483 4.2802 4.6925 41 1 7.8371 1.3677 0.1696 42 1 7.9505 1.2631 1.9463 43 1 5.7673 2.3524 2.1974 44 1 5.5899 0.9794 1.0782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895065927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:20 Heat of formation + Delta-G solvation = -47.259469 kcal Electronic energy + Delta-G solvation = -21236.746018 eV Core-core repulsion = 18188.400197 eV Total energy + Delta-G solvation = -3048.345820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.13707 -37.41387 -35.87290 -33.53829 -32.48790 -31.74449 -30.41184 -27.61133 -26.70614 -26.07815 -24.10154 -23.10489 -21.59404 -20.77888 -19.60404 -18.74850 -16.62752 -15.92940 -15.58177 -15.06380 -14.86250 -14.65635 -14.30617 -14.19278 -13.92973 -13.59295 -13.34259 -13.21390 -12.50051 -12.41400 -12.15377 -11.87019 -11.70458 -11.60469 -11.37816 -11.18809 -11.06552 -11.02616 -10.87046 -10.76134 -10.72181 -10.53879 -10.43546 -10.24357 -10.07703 -9.90217 -8.85832 -8.07698 -7.57324 -7.14697 -6.19391 -4.64011 3.13422 3.20529 3.23889 4.04425 4.12758 4.56851 4.59687 4.69156 4.74758 4.89202 5.01630 5.16678 5.34649 5.40453 5.49899 5.54278 5.57635 5.64726 5.66139 5.72612 5.75300 5.82632 5.85885 5.89487 5.93656 5.95462 6.03964 6.05784 6.12446 6.18772 6.28928 6.36557 6.48804 6.51365 6.57936 6.75175 7.33993 7.37454 7.45240 7.65106 8.14460 8.39080 9.02450 9.46479 10.58379 10.77080 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026986 B = 0.004000 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.318477 B = 6998.683610 C = 7665.445116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.095 4.095 5 H 0.073 0.927 6 C -0.138 4.138 7 C 0.060 3.940 8 N -0.533 5.533 9 C 0.046 3.954 10 C 0.126 3.874 11 N -0.645 5.645 12 C 0.560 3.440 13 O -0.580 6.580 14 C -0.544 4.544 15 H 0.072 0.928 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.906 3.094 19 H -0.272 1.272 20 H -0.264 1.264 21 H -0.279 1.279 22 C 0.129 3.871 23 C 0.036 3.964 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.268 0.732 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.033 0.967 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.763 -7.586 -7.369 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.113 4.113 5 H 0.092 0.908 6 C -0.195 4.195 7 C -0.068 4.068 8 N -0.258 5.258 9 C -0.083 4.083 10 C 0.001 3.999 11 N -0.383 5.383 12 C 0.366 3.634 13 O -0.462 6.462 14 C -0.581 4.581 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.188 1.188 21 H -0.204 1.204 22 C 0.004 3.996 23 C -0.093 4.093 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.051 0.949 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.231 -6.956 -7.650 19.245 hybrid contribution -0.088 -0.362 1.300 1.352 sum -16.319 -7.319 -6.350 18.979 Atomic orbital electron populations 1.21781 0.96206 1.01368 1.01644 1.21568 0.95447 0.97090 1.02168 1.21632 0.95062 0.96710 1.01787 1.21281 0.94467 0.96147 0.99419 0.90844 1.21753 1.02353 0.99283 0.96138 1.22143 0.88108 0.96509 1.00035 1.61996 1.07253 1.09040 1.47487 1.22481 0.97110 0.89170 0.99520 1.21188 0.90471 0.95012 0.93203 1.48236 1.40126 1.09346 1.40614 1.18260 0.77640 0.89242 0.78291 1.90583 1.64353 1.22132 1.69179 1.20963 1.24860 0.93313 1.18942 0.90979 1.25736 0.95296 0.95605 0.96591 1.70018 1.25442 1.17548 1.26776 0.86395 0.78662 0.81630 0.80235 1.19774 1.18812 1.20445 1.21563 0.90133 0.86267 1.01588 1.22750 0.97347 0.96643 0.92533 0.92893 0.92970 0.92908 0.91696 0.92132 0.92315 0.92063 0.93241 0.91318 0.93433 0.95511 0.91153 0.94912 0.91059 0.89735 0.93379 0.92113 0.93345 0.88926 0.94881 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.15 0.37 -0.74 16 2 C -0.13 -1.02 5.69 -26.73 -0.15 -1.17 16 3 C -0.11 -1.02 4.68 -26.73 -0.13 -1.14 16 4 C -0.09 -0.99 1.92 -90.62 -0.17 -1.17 16 5 H 0.07 0.82 6.04 -51.93 -0.31 0.51 16 6 C -0.14 -1.43 8.78 37.16 0.33 -1.10 16 7 C 0.06 0.74 4.52 -3.83 -0.02 0.72 16 8 N -0.53 -8.05 4.05 -234.03 -0.95 -9.00 16 9 C 0.05 0.77 5.62 -3.70 -0.02 0.75 16 10 C 0.13 2.56 6.61 -3.60 -0.02 2.53 16 11 N -0.64 -15.06 3.00 -173.83 -0.52 -15.58 16 12 C 0.56 16.18 7.62 -12.99 -0.10 16.08 16 13 O -0.58 -19.01 14.51 5.20 0.08 -18.93 16 14 C -0.54 -15.34 8.74 -35.63 -0.31 -15.65 16 15 H 0.07 1.85 5.94 -52.49 -0.31 1.54 16 16 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 17 N -0.77 -23.18 11.85 55.55 0.66 -22.52 16 18 Si 0.91 20.08 29.56 -169.99 -5.02 15.06 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.13 2.47 6.47 -3.36 -0.02 2.45 16 23 C 0.04 0.58 5.25 -3.46 -0.02 0.56 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.83 7.65 -51.93 -0.40 0.43 16 33 H 0.05 0.44 6.57 -51.93 -0.34 0.10 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.08 1.90 7.04 -51.93 -0.37 1.53 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.09 1.83 5.57 -51.93 -0.29 1.55 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.08 1.07 5.71 -51.93 -0.30 0.78 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -33.06 338.93 -8.72 -41.79 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -7.71 Total: -0.39 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -0.36 Total: 4.47 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.81 Total: -47.10 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.08 Total: -18.93 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.06 -8.72 -41.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895065927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.470 kcal (2) G-P(sol) polarization free energy of solvation -33.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds