Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47040 * 2 1 4 4 C 1.53001 * 109.47087 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47561 * 305.00623 * 4 3 2 6 6 C 1.53000 * 109.46598 * 65.00621 * 4 3 2 7 7 C 1.53000 * 109.47256 * 185.00069 * 4 3 2 8 8 N 1.46895 * 109.47350 * 178.03637 * 7 4 3 9 9 C 1.46895 * 111.00069 * 182.99743 * 8 7 4 10 10 C 1.53237 * 109.34016 * 187.25259 * 9 8 7 11 11 N 1.47079 * 108.52106 * 306.16409 * 10 9 8 12 12 C 1.34778 * 120.88358 * 231.18543 * 11 10 9 13 13 O 1.21688 * 120.00058 * 6.04196 * 12 11 10 14 14 C 1.46377 * 119.99708 * 186.04076 * 12 11 10 15 15 H 1.07991 * 120.00348 * 6.39658 * 14 12 11 16 16 C 1.40048 * 119.99500 * 186.38822 * 14 12 11 17 17 N 1.30675 * 120.00074 * 0.02562 * 16 14 12 18 18 Si 1.86808 * 119.99840 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47000 * 270.00270 * 18 16 14 20 20 H 1.48493 * 109.46971 * 30.00209 * 18 16 14 21 21 H 1.48493 * 109.46953 * 150.00405 * 18 16 14 22 22 C 1.47085 * 118.23367 * 51.46105 * 11 10 9 23 23 C 1.46900 * 110.99732 * 307.29433 * 8 7 4 24 24 H 1.09006 * 109.47265 * 59.99614 * 1 2 3 25 25 H 1.09000 * 109.47546 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47403 * 300.00004 * 1 2 3 27 27 H 1.09006 * 109.47233 * 240.00793 * 2 1 3 28 28 H 1.09000 * 109.47371 * 119.99956 * 2 1 3 29 29 H 1.09001 * 109.47148 * 60.00259 * 3 2 1 30 30 H 1.08998 * 109.47742 * 300.00195 * 3 2 1 31 31 H 1.08996 * 109.47606 * 60.00028 * 6 4 3 32 32 H 1.09002 * 109.47033 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47153 * 299.99415 * 6 4 3 34 34 H 1.09001 * 109.46940 * 58.03249 * 7 4 3 35 35 H 1.08998 * 109.47248 * 298.03635 * 7 4 3 36 36 H 1.08999 * 109.49926 * 67.28930 * 9 8 7 37 37 H 1.09004 * 109.49490 * 307.21029 * 9 8 7 38 38 H 1.08999 * 109.63131 * 186.45796 * 10 9 8 39 39 H 1.09006 * 109.79139 * 65.97400 * 10 9 8 40 40 H 0.97004 * 119.99631 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.62813 * 68.24864 * 22 11 10 42 42 H 1.09002 * 109.62520 * 188.83203 * 22 11 10 43 43 H 1.09004 * 109.49582 * 292.70357 * 23 8 7 44 44 H 1.09002 * 109.49632 * 52.76167 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8532 0.8426 6 6 4.0804 0.8328 -1.3065 7 6 4.0799 2.8796 0.1264 8 7 5.5481 2.8757 0.1743 9 6 6.0721 4.2345 0.3665 10 6 7.5982 4.2139 0.2301 11 7 8.1363 3.2036 1.1536 12 6 9.1282 3.5103 2.0130 13 8 9.5155 4.6598 2.1100 14 6 9.7395 2.4606 2.8297 15 1 9.4697 1.4270 2.6711 16 6 10.6746 2.7967 3.8166 17 7 11.0009 4.0474 4.0087 18 14 11.4554 1.4571 4.8585 19 1 10.6289 1.2279 6.0707 20 1 11.5368 0.2013 4.0702 21 1 12.8211 1.8773 5.2627 22 6 7.5673 1.8479 1.1101 23 6 6.0384 1.9633 1.2160 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9565 -0.8899 31 1 3.7174 1.4222 -2.1485 32 1 5.1704 0.8332 -1.3063 33 1 3.7171 -0.1909 -1.3961 34 1 3.6877 3.3256 1.0403 35 1 3.7460 3.4602 -0.7335 36 1 5.8005 4.5921 1.3597 37 1 5.6484 4.8979 -0.3876 38 1 8.0019 5.1940 0.4841 39 1 7.8739 3.9585 -0.7932 40 1 11.6483 4.2802 4.6925 41 1 7.8371 1.3677 0.1696 42 1 7.9505 1.2631 1.9463 43 1 5.7673 2.3524 2.1974 44 1 5.5899 0.9794 1.0782 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895065927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = -68.814292 kcal Electronic energy + Delta-G solvation = -21237.680705 eV Core-core repulsion = 18188.400197 eV Total energy + Delta-G solvation = -3049.280508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.59332 -38.95809 -37.22916 -35.03783 -34.59765 -32.85065 -31.85316 -29.22723 -27.89507 -27.41481 -25.35092 -24.61043 -22.77914 -22.01207 -20.71694 -20.37786 -18.46770 -17.82406 -16.74048 -16.32020 -16.06237 -15.97642 -15.92059 -15.70663 -15.44545 -14.73450 -14.45502 -14.38709 -14.12303 -13.52268 -13.33329 -13.22854 -13.04630 -12.85037 -12.71721 -12.65610 -12.50150 -12.31273 -12.20761 -12.11176 -11.98823 -11.87101 -11.75751 -11.35817 -11.20846 -11.08809 -10.94054 -9.80851 -9.43072 -8.99568 -8.30028 -6.85084 1.39379 1.41131 1.56577 2.23278 2.44466 2.73606 3.00884 3.58709 3.79132 3.99918 4.00998 4.12321 4.17143 4.28595 4.32154 4.40415 4.43544 4.53971 4.57794 4.67525 4.75548 4.76960 4.83956 4.86982 4.95442 4.96040 4.99617 5.04206 5.12020 5.19535 5.24198 5.29080 5.35923 5.38331 5.45917 5.58210 5.66570 5.73679 6.04693 6.12721 6.14581 6.41928 6.86668 7.41963 8.45362 8.66318 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.026986 B = 0.004000 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.318477 B = 6998.683610 C = 7665.445116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.109 4.109 4 C -0.089 4.089 5 H 0.068 0.932 6 C -0.134 4.134 7 C 0.061 3.939 8 N -0.530 5.530 9 C 0.058 3.942 10 C 0.123 3.877 11 N -0.649 5.649 12 C 0.540 3.460 13 O -0.635 6.635 14 C -0.568 4.568 15 H 0.094 0.906 16 C 0.027 3.973 17 N -0.825 5.825 18 Si 0.997 3.003 19 H -0.260 1.260 20 H -0.246 1.246 21 H -0.275 1.275 22 C 0.125 3.875 23 C 0.047 3.953 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.022 0.978 35 H 0.083 0.917 36 H 0.012 0.988 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.274 0.726 41 H 0.064 0.936 42 H 0.084 0.916 43 H 0.014 0.986 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.350 -10.119 -7.891 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.147 4.147 4 C -0.108 4.108 5 H 0.086 0.914 6 C -0.191 4.191 7 C -0.067 4.067 8 N -0.254 5.254 9 C -0.071 4.071 10 C -0.001 4.001 11 N -0.386 5.386 12 C 0.346 3.654 13 O -0.522 6.522 14 C -0.604 4.604 15 H 0.112 0.888 16 C -0.187 4.187 17 N -0.454 5.454 18 Si 0.816 3.184 19 H -0.185 1.185 20 H -0.169 1.169 21 H -0.199 1.199 22 C 0.002 3.998 23 C -0.081 4.081 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.102 0.898 36 H 0.030 0.970 37 H 0.120 0.880 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.102 0.898 43 H 0.032 0.968 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.883 -9.526 -8.217 21.864 hybrid contribution 0.338 0.449 1.368 1.479 sum -17.545 -9.077 -6.849 20.907 Atomic orbital electron populations 1.21774 0.95563 1.01838 1.01791 1.21555 0.96022 0.96391 1.02184 1.21581 0.93675 0.97416 1.02003 1.21239 0.95590 0.94575 0.99366 0.91406 1.21707 1.01190 1.00173 0.96011 1.22248 0.85831 0.98192 1.00383 1.62005 1.09246 1.07609 1.46589 1.22314 0.94463 0.90893 0.99419 1.21296 0.92928 0.92812 0.93020 1.48149 1.39051 1.11597 1.39767 1.18710 0.78627 0.88825 0.79229 1.90528 1.66472 1.24046 1.71196 1.21483 1.25385 0.94220 1.19347 0.88847 1.27033 0.95421 0.98489 0.97803 1.70199 1.26503 1.20737 1.27998 0.85030 0.77372 0.77920 0.78069 1.18471 1.16945 1.19945 1.21757 0.92126 0.83944 1.01976 1.22629 0.95128 0.98441 0.91939 0.92517 0.92388 0.93021 0.91357 0.92440 0.92547 0.91433 0.92832 0.92958 0.92166 0.95964 0.89817 0.97005 0.88001 0.92867 0.91920 0.91628 0.91769 0.89790 0.96788 0.87139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.12 -1.68 5.69 30.59 0.17 -1.51 16 3 C -0.11 -1.64 4.68 30.60 0.14 -1.50 16 4 C -0.09 -1.63 1.92 -10.79 -0.02 -1.65 16 5 H 0.07 1.33 6.04 -2.39 -0.01 1.31 16 6 C -0.13 -2.37 8.78 71.98 0.63 -1.73 16 7 C 0.06 1.35 4.52 86.30 0.39 1.74 16 8 N -0.53 -15.07 4.05 -894.33 -3.62 -18.69 16 9 C 0.06 1.91 5.62 86.38 0.49 2.40 16 10 C 0.12 5.11 6.61 86.35 0.57 5.68 16 11 N -0.65 -30.98 3.00 -822.11 -2.47 -33.45 16 12 C 0.54 32.42 7.62 86.36 0.66 33.08 16 13 O -0.63 -43.95 14.51 -4.31 -0.06 -44.02 16 14 C -0.57 -32.57 8.74 24.83 0.22 -32.35 16 15 H 0.09 4.77 5.94 -2.92 -0.02 4.75 16 16 C 0.03 1.54 5.50 85.30 0.47 2.01 16 17 N -0.82 -51.40 11.85 21.84 0.26 -51.14 16 18 Si 1.00 41.13 29.56 68.60 2.03 43.16 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 22 C 0.13 4.71 6.47 86.50 0.56 5.27 16 23 C 0.05 1.45 5.25 86.54 0.45 1.90 16 24 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.07 0.89 6.57 -2.38 -0.02 0.87 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 1.11 7.65 -2.39 -0.02 1.09 16 33 H 0.06 0.92 6.57 -2.39 -0.02 0.90 16 34 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.10 2.74 8.11 -2.38 -0.02 2.72 16 38 H 0.05 2.52 7.04 -2.39 -0.02 2.51 16 39 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 40 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.08 3.28 5.57 -2.39 -0.01 3.27 16 43 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.11 2.72 5.71 -2.39 -0.01 2.71 16 Total: -1.00 -75.07 338.93 2.54 -72.54 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.95 Total: 19.38 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 5.45 Total: 12.21 kcal Atomic # 7 Polarization: -97.44 SS G_CDS: -5.83 Total: -103.28 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.06 Total: -44.02 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -75.07 2.54 -72.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895065927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.724 kcal (2) G-P(sol) polarization free energy of solvation -75.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds