Wall clock time and date at job start Mon Mar 30 2020 00:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47358 * 2 1 4 4 C 1.53007 * 109.47013 * 240.00088 * 2 1 3 5 5 N 1.46896 * 109.47095 * 120.00322 * 2 1 3 6 6 C 1.48195 * 111.07137 * 319.13816 * 5 2 1 7 7 C 1.53938 * 86.09947 * 137.52059 * 6 5 2 8 8 C 1.47960 * 111.00093 * 58.57102 * 5 2 1 9 9 H 1.08993 * 113.76204 * 336.73849 * 8 5 2 10 10 C 1.50701 * 113.75777 * 108.10252 * 8 5 2 11 11 O 1.21283 * 120.00246 * 356.06356 * 10 8 5 12 12 N 1.34775 * 119.99745 * 176.06784 * 10 8 5 13 13 C 1.46507 * 119.99899 * 179.97438 * 12 10 8 14 14 C 1.52992 * 109.47284 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47515 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47535 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00137 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00055 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00109 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00129 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47368 * 89.99983 * 20 18 16 22 22 H 1.48504 * 109.47226 * 210.00315 * 20 18 16 23 23 H 1.48509 * 109.47007 * 330.00179 * 20 18 16 24 24 H 1.08993 * 109.47253 * 309.21332 * 1 2 3 25 25 H 1.09004 * 109.46867 * 69.21077 * 1 2 3 26 26 H 1.08998 * 109.46901 * 189.20469 * 1 2 3 27 27 H 1.08993 * 109.47455 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47127 * 300.00356 * 3 2 1 29 29 H 1.09007 * 109.46785 * 59.99792 * 3 2 1 30 30 H 1.08997 * 109.47345 * 299.99669 * 4 2 1 31 31 H 1.09001 * 109.47191 * 60.00452 * 4 2 1 32 32 H 1.09006 * 109.46770 * 180.02562 * 4 2 1 33 33 H 1.09004 * 113.75493 * 23.23999 * 6 5 2 34 34 H 1.08996 * 113.82222 * 251.81215 * 6 5 2 35 35 H 1.09003 * 113.72863 * 221.95847 * 7 6 5 36 36 H 1.09002 * 113.73141 * 90.78578 * 7 6 5 37 37 H 0.96998 * 120.00367 * 359.97438 * 12 10 8 38 38 H 1.09000 * 109.47146 * 299.99935 * 13 12 10 39 39 H 1.09004 * 109.46588 * 59.99851 * 13 12 10 40 40 H 1.09000 * 109.47257 * 300.00211 * 14 13 12 41 41 H 1.09001 * 109.46806 * 60.00158 * 14 13 12 42 42 H 1.09000 * 109.46858 * 300.00244 * 15 14 13 43 43 H 1.09001 * 109.47127 * 60.00143 * 15 14 13 44 44 H 0.96995 * 120.00120 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 1.2112 -0.3346 2.3887 7 6 1.2713 -1.8300 2.7491 8 6 1.5173 -2.0833 1.2508 9 1 0.6046 -2.2421 0.6766 10 6 2.5748 -3.1213 0.9763 11 8 3.6973 -2.7777 0.6716 12 7 2.2730 -4.4316 1.0693 13 6 3.3009 -5.4407 0.8018 14 6 2.7018 -6.8376 0.9763 15 6 3.7753 -7.8915 0.6977 16 6 3.1850 -9.2674 0.8689 17 1 2.1480 -9.3791 1.1490 18 6 3.9692 -10.3838 0.6691 19 7 3.4539 -11.5846 0.8181 20 14 5.7631 -10.1907 0.1854 21 1 6.6017 -10.1264 1.4093 22 1 6.1809 -11.3520 -0.6405 23 1 5.9329 -8.9400 -0.5972 24 1 -0.3633 0.6497 0.7962 25 1 -0.3633 0.3648 -0.9608 26 1 -0.3633 -1.0144 0.1644 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7216 -1.2490 33 1 0.2087 0.0192 2.1479 34 1 1.7319 0.3093 3.0974 35 1 0.3255 -2.2319 3.1125 36 1 2.1172 -2.0946 3.3836 37 1 1.3754 -4.7065 1.3133 38 1 3.6655 -5.3263 -0.2190 39 1 4.1280 -5.3107 1.4999 40 1 2.3374 -6.9518 1.9973 41 1 1.8745 -6.9678 0.2786 42 1 4.1400 -7.7775 -0.3232 43 1 4.6023 -7.7612 1.3957 44 1 4.0055 -12.3699 0.6771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896163656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:29 Heat of formation + Delta-G solvation = -10.954266 kcal Electronic energy + Delta-G solvation = -20869.796262 eV Core-core repulsion = 17823.024753 eV Total energy + Delta-G solvation = -3046.771509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.29097 -38.71372 -35.43656 -35.11554 -33.25923 -31.45757 -28.65361 -27.85841 -27.63813 -27.13520 -25.93334 -22.90499 -21.36214 -20.63825 -19.94175 -18.86130 -17.40049 -16.77392 -16.55115 -15.77924 -15.29195 -14.94642 -14.48855 -14.35531 -13.99566 -13.89655 -13.80309 -13.14669 -12.76774 -12.69728 -12.60898 -12.22696 -12.05982 -11.98000 -11.90632 -11.60633 -11.46963 -11.32230 -11.06629 -10.89498 -10.83551 -10.81194 -10.15709 -9.93987 -9.76099 -9.50302 -9.22605 -8.83598 -8.79060 -8.55447 -6.06401 -4.05073 2.75046 3.13025 3.31701 3.39214 3.43820 3.80955 4.18070 4.42529 4.44684 4.46380 4.66233 4.69953 4.88673 4.91152 5.03492 5.20571 5.27843 5.31169 5.34283 5.47454 5.49995 5.56048 5.58692 5.63453 5.67771 5.70544 5.75443 5.85313 5.93141 6.03611 6.11284 6.25409 6.39345 6.46097 6.72997 6.81173 6.83414 7.23463 7.36889 7.70571 7.78106 8.44535 8.50708 8.97421 9.56020 11.06873 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038591 B = 0.003190 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.379383 B = 8775.005779 C = 8998.793907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.067 3.933 3 C -0.130 4.130 4 C -0.137 4.137 5 N -0.439 5.439 6 C -0.010 4.010 7 C -0.130 4.130 8 C 0.004 3.996 9 H 0.104 0.896 10 C 0.522 3.478 11 O -0.522 6.522 12 N -0.728 5.728 13 C 0.116 3.884 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.522 4.522 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.264 1.264 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.398 0.602 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.018 0.982 43 H 0.014 0.986 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.369 25.332 0.785 26.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.023 4.023 3 C -0.188 4.188 4 C -0.195 4.195 5 N -0.162 5.162 6 C -0.138 4.138 7 C -0.168 4.168 8 C -0.109 4.109 9 H 0.121 0.879 10 C 0.306 3.694 11 O -0.397 6.397 12 N -0.380 5.380 13 C -0.006 4.006 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.560 4.560 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.231 0.769 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.766 25.536 0.504 26.422 hybrid contribution -0.433 -0.398 -0.275 0.649 sum -7.199 25.137 0.229 26.149 Atomic orbital electron populations 1.22604 0.96751 1.02157 1.02745 1.21552 0.92656 0.95767 0.92358 1.21710 1.02146 0.93665 1.01285 1.21822 1.02781 0.99534 0.95341 1.68722 1.45350 1.00143 1.01963 1.24139 0.98342 0.97139 0.94168 1.23285 1.03221 0.96126 0.94196 1.23527 0.96860 0.91920 0.98602 0.87857 1.20051 0.89088 0.82788 0.77488 1.90695 1.22066 1.80862 1.46068 1.46128 1.15096 1.05690 1.71086 1.21616 0.90520 0.87486 1.01027 1.21696 1.00154 0.91660 1.01551 1.19503 0.94378 0.94436 0.96602 1.21100 0.98972 0.88640 1.47273 0.91019 1.25028 0.98531 0.95185 0.94734 1.69911 1.36617 0.97695 1.50028 0.86778 0.85485 0.77964 0.79086 1.20226 1.21369 1.18885 0.91692 0.91641 0.92114 0.91648 0.92344 0.92830 0.93057 0.92365 0.91139 0.89825 0.89078 0.90121 0.88647 0.76896 0.91935 0.91892 0.92139 0.92162 0.96337 0.96745 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 7.29 37.16 0.27 -1.04 16 2 C 0.07 0.62 0.72 -131.60 -0.09 0.53 16 3 C -0.13 -1.10 8.63 37.16 0.32 -0.78 16 4 C -0.14 -1.47 8.28 37.16 0.31 -1.16 16 5 N -0.44 -4.79 5.44 -216.24 -1.18 -5.97 16 6 C -0.01 -0.08 7.31 -2.63 -0.02 -0.10 16 7 C -0.13 -1.11 7.83 -25.80 -0.20 -1.31 16 8 C 0.00 0.04 2.41 -67.80 -0.16 -0.12 16 9 H 0.10 0.91 5.54 -51.93 -0.29 0.63 16 10 C 0.52 7.56 6.96 -10.99 -0.08 7.49 16 11 O -0.52 -9.81 16.68 5.55 0.09 -9.71 16 12 N -0.73 -9.99 5.56 -60.29 -0.33 -10.32 16 13 C 0.12 1.95 5.67 -4.04 -0.02 1.93 16 14 C -0.11 -2.10 5.27 -26.74 -0.14 -2.24 16 15 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 16 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 20 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 24 H 0.06 0.40 6.26 -51.93 -0.33 0.07 16 25 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 26 H 0.06 0.43 5.74 -51.93 -0.30 0.13 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.41 7.86 -51.92 -0.41 0.00 16 30 H 0.05 0.59 6.84 -51.93 -0.36 0.24 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.53 5.08 -51.93 -0.26 0.27 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.40 4.34 8.47 -40.82 -0.35 3.99 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 43 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -33.19 343.91 -8.20 -41.39 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.71 Total: -0.28 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -0.36 Total: -10.42 kcal Atomic # 7 Polarization: -42.59 SS G_CDS: -0.74 Total: -43.33 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.19 -8.20 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896163656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.435 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds