Wall clock time and date at job start Mon Mar 30 2020 00:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47358 * 2 1 4 4 C 1.53007 * 109.47013 * 240.00088 * 2 1 3 5 5 N 1.46896 * 109.47095 * 120.00322 * 2 1 3 6 6 C 1.48195 * 111.07137 * 319.13816 * 5 2 1 7 7 C 1.53938 * 86.09947 * 137.52059 * 6 5 2 8 8 C 1.47960 * 111.00093 * 58.57102 * 5 2 1 9 9 H 1.08993 * 113.76204 * 336.73849 * 8 5 2 10 10 C 1.50701 * 113.75777 * 108.10252 * 8 5 2 11 11 O 1.21283 * 120.00246 * 356.06356 * 10 8 5 12 12 N 1.34775 * 119.99745 * 176.06784 * 10 8 5 13 13 C 1.46507 * 119.99899 * 179.97438 * 12 10 8 14 14 C 1.52992 * 109.47284 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47515 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47535 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00137 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00055 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00109 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00129 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47368 * 89.99983 * 20 18 16 22 22 H 1.48504 * 109.47226 * 210.00315 * 20 18 16 23 23 H 1.48509 * 109.47007 * 330.00179 * 20 18 16 24 24 H 1.08993 * 109.47253 * 309.21332 * 1 2 3 25 25 H 1.09004 * 109.46867 * 69.21077 * 1 2 3 26 26 H 1.08998 * 109.46901 * 189.20469 * 1 2 3 27 27 H 1.08993 * 109.47455 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47127 * 300.00356 * 3 2 1 29 29 H 1.09007 * 109.46785 * 59.99792 * 3 2 1 30 30 H 1.08997 * 109.47345 * 299.99669 * 4 2 1 31 31 H 1.09001 * 109.47191 * 60.00452 * 4 2 1 32 32 H 1.09006 * 109.46770 * 180.02562 * 4 2 1 33 33 H 1.09004 * 113.75493 * 23.23999 * 6 5 2 34 34 H 1.08996 * 113.82222 * 251.81215 * 6 5 2 35 35 H 1.09003 * 113.72863 * 221.95847 * 7 6 5 36 36 H 1.09002 * 113.73141 * 90.78578 * 7 6 5 37 37 H 0.96998 * 120.00367 * 359.97438 * 12 10 8 38 38 H 1.09000 * 109.47146 * 299.99935 * 13 12 10 39 39 H 1.09004 * 109.46588 * 59.99851 * 13 12 10 40 40 H 1.09000 * 109.47257 * 300.00211 * 14 13 12 41 41 H 1.09001 * 109.46806 * 60.00158 * 14 13 12 42 42 H 1.09000 * 109.46858 * 300.00244 * 15 14 13 43 43 H 1.09001 * 109.47127 * 60.00143 * 15 14 13 44 44 H 0.96995 * 120.00120 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0196 -0.6925 1.1994 6 6 1.2112 -0.3346 2.3887 7 6 1.2713 -1.8300 2.7491 8 6 1.5173 -2.0833 1.2508 9 1 0.6046 -2.2421 0.6766 10 6 2.5748 -3.1213 0.9763 11 8 3.6973 -2.7777 0.6716 12 7 2.2730 -4.4316 1.0693 13 6 3.3009 -5.4407 0.8018 14 6 2.7018 -6.8376 0.9763 15 6 3.7753 -7.8915 0.6977 16 6 3.1850 -9.2674 0.8689 17 1 2.1480 -9.3791 1.1490 18 6 3.9692 -10.3838 0.6691 19 7 3.4539 -11.5846 0.8181 20 14 5.7631 -10.1907 0.1854 21 1 6.6017 -10.1264 1.4093 22 1 6.1809 -11.3520 -0.6405 23 1 5.9329 -8.9400 -0.5972 24 1 -0.3633 0.6497 0.7962 25 1 -0.3633 0.3648 -0.9608 26 1 -0.3633 -1.0144 0.1644 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6767 -1.7489 -1.2493 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7216 -1.2490 33 1 0.2087 0.0192 2.1479 34 1 1.7319 0.3093 3.0974 35 1 0.3255 -2.2319 3.1125 36 1 2.1172 -2.0946 3.3836 37 1 1.3754 -4.7065 1.3133 38 1 3.6655 -5.3263 -0.2190 39 1 4.1280 -5.3107 1.4999 40 1 2.3374 -6.9518 1.9973 41 1 1.8745 -6.9678 0.2786 42 1 4.1400 -7.7775 -0.3232 43 1 4.6023 -7.7612 1.3957 44 1 4.0055 -12.3699 0.6771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896163656.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:29 Heat of formation + Delta-G solvation = -35.395214 kcal Electronic energy + Delta-G solvation = -20870.856101 eV Core-core repulsion = 17823.024753 eV Total energy + Delta-G solvation = -3047.831348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.08646 -39.84316 -36.92260 -35.84455 -35.11060 -33.27581 -29.81607 -28.72406 -28.34242 -28.11369 -26.99581 -24.52053 -22.31522 -22.15669 -21.04359 -19.65844 -18.96878 -18.28752 -17.32737 -17.01815 -16.58441 -16.25319 -15.75102 -15.33887 -15.19121 -14.98246 -14.79943 -14.65063 -13.84923 -13.81080 -13.67739 -13.47452 -13.33321 -12.95374 -12.76771 -12.73956 -12.69281 -12.35892 -12.15331 -11.96546 -11.91536 -11.78601 -11.60365 -11.53408 -11.48910 -11.33681 -10.76949 -10.72265 -10.05193 -9.56744 -8.30206 -6.33886 1.35985 1.37639 1.49407 1.65713 2.11106 2.35562 2.99371 3.05585 3.47225 3.68876 3.79849 3.98170 3.98359 4.03739 4.14288 4.19722 4.26988 4.36321 4.49794 4.61951 4.70319 4.73125 4.80995 4.86137 4.87882 4.91137 4.91890 4.94361 5.03377 5.05708 5.10385 5.15692 5.25087 5.40318 5.43064 5.50073 5.54456 5.55026 5.64725 6.14928 6.26862 6.65092 6.74335 7.31018 7.34101 8.86216 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.038591 B = 0.003190 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.379383 B = 8775.005779 C = 8998.793907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.063 3.937 3 C -0.127 4.127 4 C -0.134 4.134 5 N -0.473 5.473 6 C -0.002 4.002 7 C -0.123 4.123 8 C 0.007 3.993 9 H 0.127 0.873 10 C 0.518 3.482 11 O -0.571 6.571 12 N -0.718 5.718 13 C 0.129 3.871 14 C -0.098 4.098 15 C -0.012 4.012 16 C -0.530 4.530 17 H 0.039 0.961 18 C 0.006 3.994 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.250 1.250 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.037 0.963 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.414 0.586 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.019 0.981 43 H 0.018 0.982 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 27.351 0.979 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.026 4.026 3 C -0.185 4.185 4 C -0.192 4.192 5 N -0.197 5.197 6 C -0.129 4.129 7 C -0.161 4.161 8 C -0.106 4.106 9 H 0.144 0.856 10 C 0.305 3.695 11 O -0.449 6.449 12 N -0.371 5.371 13 C 0.005 3.995 14 C -0.136 4.136 15 C -0.050 4.050 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.191 4.191 19 N -0.591 5.591 20 Si 0.770 3.230 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.173 1.173 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.082 0.918 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.126 0.874 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.250 0.750 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.811 27.571 0.714 28.665 hybrid contribution -0.171 -1.029 -0.331 1.094 sum -7.982 26.543 0.383 27.719 Atomic orbital electron populations 1.22543 0.94482 1.02798 1.03865 1.21609 0.94367 0.95605 0.91045 1.21689 1.00755 0.93539 1.02518 1.21795 1.00624 0.99439 0.97299 1.68698 1.47066 1.00426 1.03488 1.24213 0.99132 0.96793 0.92781 1.23275 1.03935 0.96668 0.92269 1.23565 0.95839 0.90679 1.00486 0.85610 1.20845 0.89386 0.83286 0.76005 1.90673 1.24410 1.81580 1.48283 1.45959 1.15248 1.05197 1.70679 1.21239 0.90877 0.87161 1.00205 1.21466 0.98811 0.91358 1.02001 1.19468 0.95676 0.93263 0.96639 1.21461 0.97800 0.91136 1.46399 0.94253 1.25961 1.03492 0.94789 0.94887 1.70050 1.38603 0.98701 1.51710 0.85720 0.79589 0.78518 0.79216 1.19234 1.20935 1.17349 0.90099 0.90880 0.91775 0.93846 0.90958 0.91707 0.94171 0.90688 0.94396 0.87415 0.88961 0.87162 0.90421 0.74993 0.92954 0.92843 0.91556 0.91643 0.96286 0.96353 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.93 7.29 71.98 0.52 -1.41 16 2 C 0.06 1.07 0.72 3.53 0.00 1.08 16 3 C -0.13 -1.95 8.63 71.98 0.62 -1.33 16 4 C -0.13 -2.81 8.28 71.98 0.60 -2.21 16 5 N -0.47 -9.62 5.44 -838.04 -4.56 -14.18 16 6 C 0.00 -0.02 7.31 86.37 0.63 0.61 16 7 C -0.12 -1.79 7.83 31.24 0.24 -1.54 16 8 C 0.01 0.13 2.41 44.28 0.11 0.24 16 9 H 0.13 1.84 5.54 -2.39 -0.01 1.83 16 10 C 0.52 14.68 6.96 87.66 0.61 15.29 16 11 O -0.57 -21.81 16.68 -3.04 -0.05 -21.86 16 12 N -0.72 -18.81 5.56 -463.05 -2.57 -21.38 16 13 C 0.13 4.23 5.67 86.38 0.49 4.72 16 14 C -0.10 -3.58 5.27 30.59 0.16 -3.42 16 15 C -0.01 -0.58 4.04 29.85 0.12 -0.45 16 16 C -0.53 -30.20 9.66 25.60 0.25 -29.95 16 17 H 0.04 2.42 7.99 -2.91 -0.02 2.40 16 18 C 0.01 0.33 5.47 84.65 0.46 0.79 16 19 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 20 Si 0.95 44.79 27.47 68.60 1.88 46.68 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 24 H 0.08 0.63 6.26 -2.39 -0.01 0.62 16 25 H 0.07 0.70 8.12 -2.38 -0.02 0.68 16 26 H 0.06 0.66 5.74 -2.39 -0.01 0.64 16 27 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.83 7.86 -2.38 -0.02 0.81 16 30 H 0.04 0.90 6.84 -2.39 -0.02 0.88 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 33 H 0.11 0.90 5.08 -2.38 -0.01 0.89 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.42 8.09 -2.39 -0.02 1.40 16 37 H 0.41 8.16 8.47 -92.71 -0.79 7.37 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 43 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -73.63 343.91 -0.05 -73.68 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.13 Total: 13.83 kcal Atomic # 6 Polarization: -22.41 SS G_CDS: 4.82 Total: -17.59 kcal Atomic # 7 Polarization: -87.92 SS G_CDS: -6.83 Total: -94.75 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.86 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.88 Total: 46.68 kcal Total: -73.63 -0.05 -73.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896163656.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.289 kcal (2) G-P(sol) polarization free energy of solvation -73.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds